Smos008909.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:20621477-20624048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.1 10.0 0.6 2 23 117 139 116 140 0.93 2 12 0.006 0.36 11.5 1.1 1 23 278 300 278 300 0.94 3 12 0.015 0.92 10.2 0.3 1 19 305 323 305 323 0.98 4 12 0.13 7.7 7.3 0.6 3 23 337 357 335 357 0.90 5 12 0.025 1.5 9.6 0.3 1 23 431 453 431 453 0.96 6 12 0.15 8.9 7.1 0.4 1 23 457 482 457 482 0.94 7 12 0.0078 0.47 11.1 1.6 2 21 489 508 488 509 0.94 8 12 3.3e-05 0.002 18.6 1.6 1 22 516 537 516 537 0.97 9 12 9.1e-08 5.4e-06 26.7 1.0 1 23 543 565 543 565 0.99 10 12 1.2e-05 0.00069 20.0 1.0 1 23 571 593 571 593 0.98 11 12 0.00086 0.052 14.1 3.1 1 23 599 621 599 621 0.98 12 12 0.00011 0.0063 17.0 7.9 1 23 627 650 627 650 0.96
Sequence Information
- Coding Sequence
- atgactgaaaacTCAATGGAAATAATCGATGGAAATTACGAATTGGATATAAATCCAAAGAAAGTGTGTCGTTTGTGTTTGTCACAGCCGCCGAACTTGTTGAATGTTTTCTCAAACTCAATAGTAGACGGTTACATTATATCGGTTCCAGATATGTTGGCATTTACCGTTGATATCACCGTTACGGCCGATGACAAATTGCCCAACAAAATATGCAGCGAATGCAAGAAgcaaatcatttctttttatacatttaaacaaaagacaaaacgAACCGAGCAATCGCTCATTTCGATGATCTCATCGGAAACAAGCACGGCACAAGAGACTGCTGTTCAGGAGGTGGTCACTTGTTCATTGTGTGAGGCTACATTTGATACAGAAAGCACTTTCATCCAACATGCACAACAGGAGCATCACGATGTTGACGTCTACGAATTGGAAAATCAATCGACAAAAATTATTAAGCCGAATTCCAAAGagcaacaaattgaattttacgaTTTTGATTCGATGGGAAATGTGGGCGAGAGTGGCAATGAAACCGAAATCACCGataacattcaaattgatgaaCACGACATGTTATCGATGGACGATGAACCAGCGGCAACAGCTCTGCCAACTCGATCGTTGCGTGCTCGTACAGCCGCGAAATCAAAGGCGAAAACGGAAACGTTGGTGAAAGCAAAACGCGCTCAACCGCCAGTGGAAAAATCAATTCCTCCAAAACTGTCTTTTAAGGCGGAAATCAGCGATCTGGATGAAAATGATGTCGATGTAACCGATGACTACGATTTCGATCACAGTGGCAGCGAATCTCTCGATTTTTACGAGTGTCCACTTTGTTCAACACAGTTTGCCGACAGAGATGAGTACATTCAGCATTGTAGAGAGCACGATGGAACCGAATACCAATGCGAAAGTTGTAACAAACTCTTTGACGATGAAGACCAGCTGCTGCAGCACGACTGTGAGACAACGGACATGAATGACGAAGAATTGGTTTGTGTACCGTGCAAcaaacgattgaaatcaaCGGCACAGTTGCGACAACATAACAAAATGCACGATTCGATGAGCTTGATTATTAACTACCTTGACTTTTTCCCGTGCCACGATTGTTGCCTGCTTTACATTTCCAAAGATCGACTAAATGAACACAATGCAAATGTACATCCAGGAAAGGGTGGCAAAACTGGTTTAACGGAAAAAATCGTCGATGAATCGTGCACCGACTATCAATTTTTGGATGAGGAAAAGCAATCGGATTTCAAAGAAGGTGAAGTTTATTCGTGTGGAGAGTGCAGCCAGTCTTATCAGACAATTAACGAACTAAAGTACCACGTCATTTTGCATGCCAGCAAATTCGAGTGTCCGATCGAAGAGTGTGGTTGCCAGTATGATCAGATGTCACGGCTCAGCATTCATGTGCTCAACAAACACATCAACACCAAGAATTTGCAATGCTTACACTGTAGCCAAGCATTCCAAACATACGACGACCTTCAAACTCATCTCAAACACTTTtgcaaagaaaagaaattcaagTGCTATGAATGCGaCAAAAAATTCTTCTCAAAAAAGGCCCTAATTACACATTTGCGAACactgaaagagaaaaagttcaaatgtAAACTGTGCGGAAAGGCTTTTAAACAGCAAGGTGAACTCACCATTCATACTCGATCACACACGAATGAGCGACCATTCCAGTGCACCATCTGCAATAAATCCTACAAGACCAGCAGCATGCGTGCAGCTCACATGGATTCACACATCAGCGGAAAGACATTTGAGTGTCAACTCTGTGATAAGAAGTTGCAGTCGCGGACCAGCTATCGCAATCACATGAAACGCCATAcggaagaaaagaaacatgaATGCGAACACTGTGGCAAGCGATTCTTCACCAGATACCACTTGAAATTGCATCAGTCGAAGATTCACAAGGGGCTCAGCACCGAAACAACGAGTGCTGCTGATCTGGCCCAATTGATTGACGACGATAGCACAATGATCatctttgaataa
- Protein Sequence
- MTENSMEIIDGNYELDINPKKVCRLCLSQPPNLLNVFSNSIVDGYIISVPDMLAFTVDITVTADDKLPNKICSECKKQIISFYTFKQKTKRTEQSLISMISSETSTAQETAVQEVVTCSLCEATFDTESTFIQHAQQEHHDVDVYELENQSTKIIKPNSKEQQIEFYDFDSMGNVGESGNETEITDNIQIDEHDMLSMDDEPAATALPTRSLRARTAAKSKAKTETLVKAKRAQPPVEKSIPPKLSFKAEISDLDENDVDVTDDYDFDHSGSESLDFYECPLCSTQFADRDEYIQHCREHDGTEYQCESCNKLFDDEDQLLQHDCETTDMNDEELVCVPCNKRLKSTAQLRQHNKMHDSMSLIINYLDFFPCHDCCLLYISKDRLNEHNANVHPGKGGKTGLTEKIVDESCTDYQFLDEEKQSDFKEGEVYSCGECSQSYQTINELKYHVILHASKFECPIEECGCQYDQMSRLSIHVLNKHINTKNLQCLHCSQAFQTYDDLQTHLKHFCKEKKFKCYECDKKFFSKKALITHLRTLKEKKFKCKLCGKAFKQQGELTIHTRSHTNERPFQCTICNKSYKTSSMRAAHMDSHISGKTFECQLCDKKLQSRTSYRNHMKRHTEEKKHECEHCGKRFFTRYHLKLHQSKIHKGLSTETTSAADLAQLIDDDSTMIIFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -