Smos000310.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01006190.1:2476567-2478748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.048 2.9 8.6 0.7 3 23 195 216 193 216 0.94 2 13 1.5 87 4.0 0.3 6 23 226 243 226 243 0.93 3 13 0.031 1.9 9.2 1.2 2 23 252 273 251 273 0.96 4 13 0.0056 0.33 11.6 2.2 2 23 295 317 294 317 0.94 5 13 0.2 12 6.7 5.9 2 23 325 346 324 346 0.97 6 13 4.7e-06 0.00028 21.3 2.5 1 23 355 377 355 377 0.98 7 13 0.013 0.76 10.5 2.2 1 23 385 408 385 408 0.93 8 13 0.00061 0.036 14.6 0.8 1 23 416 439 416 439 0.92 9 13 1.2e-05 0.00071 20.0 5.3 1 23 446 468 446 468 0.96 10 13 0.53 31 5.4 0.7 2 23 480 501 479 501 0.95 11 13 0.00072 0.043 14.4 1.0 2 23 507 529 506 529 0.97 12 13 1.9e-07 1.1e-05 25.7 0.5 1 23 534 556 534 556 0.97 13 13 9.2e-05 0.0055 17.2 0.7 1 23 562 585 562 585 0.95
Sequence Information
- Coding Sequence
- ATGAATCGGGAGCAATGTTGCCGTTTGTGTATGTCCCCAAACACCGACGAACACCTGAACATATTCAGTGACATTGGAATCGAAATGAAGCTGGGTGAAATCATCAGCGAACATTTCAAGTGCGAgATCGGTGAGCTGGATCCATTGCCGAATCTTGTGTGTCAAACGTGCTGGCAAACCACAGATAACTTCCATGAACTGTATCAAAAGTCGAAAACAGTTCAAGAATCATTTCTTAATTCAACGATAAAACTAGAACCAGATGAAAGTGAACCGTGGCACAGCCATCAGGAAACCAACTTTGTCGAAGAACTACAATTGGAGGTTGGCTCAATTAAACTCGAAATAAATCAAGATGAATCAAACTCTAGCAACACTGATGCAAGGGATTACAGCGACAATACAAATGACTcggatgaaaaaattgaagagaaaaacgacaAAGAAACCAAGGAAAAGTCACCGACTAGTAAATGGGATAGTATATCaagcaacaagaaaaaaggcataaaaatgaaagacagAGAGCACGTACAGTACGATAAGCTATTTGCTGAGCACAAACATCACTTTAACATGAATTGCGAATCGTGTCCAACGACATTCGAAACGCTAGAAGAGGCGCGAAAACACTATACCAAGAAGCACCAGAATCCAAACGGTTACATCAAATGTTGTAGTTTTAGACTCAAGTATCCATATCAAGTGGTGAGACATCTAAGAAAGCATCAGCGTCGTAGTCGCAATAAAAAGCAGTGCAGGTTATGCTTCAAATTATTGGGCTCAAATTATGCTTTGAAGAAGCACATGAATCTACACGAggaaagaaatgaaaccaGCGATGAAGAGTTTATGAAATTCCTAAAAGAAAACTTTGACCTGAATTGTGATCAATGCGATACCATGTTTAGCACATTCCACGATGCTCAGCGACACTACAAAGAATCTCACGGTGATGACAATGGTTACATCAAATGCAAGAGTTGTAAATATAAAGTTAAACGATTTTTTACGCTCAAACATCACGTTAAATCTCACTCAGTCATCAAAACGCCAGAGACTTTCAaATGTGATATGTGTCCCAAAGTGTTCACAACCCAAAAATCAATAACTCGACATAAAAGACAGCATCGAATGACTATgaacaaatcatttatttgcGATTACTGTCAAAAGCCCTGCAGGGATAAATTAGCAATAACACGACATATATTTAATAAGCATATGGAGGATCTGGAGCGAAAATTCGCATGTGATATTTGCGATAAAAAGTTTCACTTACTAAAGTTGCTAACGAGGCACATTTATGCGGCACAtcgagaaaagaaacgaaatcaCACATGCGAAATATGTGGCAAGTCGTTTTTTACCAACTATCATCTTGAAAAGCATAAGCTTCAACATCTCGACAAATCCGAACGATTGGTGGAAGGAACGAAGTGTCAACATTGTGGTGAGTGGATTGCCACCAAAAGCGGAGTGTTTTATCACCAGCAAATTCACACGAGTGGACcacaaaaatgtgaacattgCCAATTGGAATTTCCGAATCGAGTTTCTTTATTGGGACACATTCGGAGATATCACCGTGAAAACAAGTTCAAATGCAACTACTGTGACAAAGCATTCACGACCGCCTCATTATTGAGGGCACACGAAGAATCGCATACTAGACATAGGGTATATCCGTGTCTCTACTGTGACAAAACGTTTTCATTGAGAATTTCTCTGTCTTCACATATGGGCCGATATCATCCGGAACAAAGGAAACTGTTGAAAGAAATGAGGAAAATGAAGAGATTTCCGGCAGCAAATAAAGACCAATAA
- Protein Sequence
- MNREQCCRLCMSPNTDEHLNIFSDIGIEMKLGEIISEHFKCEIGELDPLPNLVCQTCWQTTDNFHELYQKSKTVQESFLNSTIKLEPDESEPWHSHQETNFVEELQLEVGSIKLEINQDESNSSNTDARDYSDNTNDSDEKIEEKNDKETKEKSPTSKWDSISSNKKKGIKMKDREHVQYDKLFAEHKHHFNMNCESCPTTFETLEEARKHYTKKHQNPNGYIKCCSFRLKYPYQVVRHLRKHQRRSRNKKQCRLCFKLLGSNYALKKHMNLHEERNETSDEEFMKFLKENFDLNCDQCDTMFSTFHDAQRHYKESHGDDNGYIKCKSCKYKVKRFFTLKHHVKSHSVIKTPETFKCDMCPKVFTTQKSITRHKRQHRMTMNKSFICDYCQKPCRDKLAITRHIFNKHMEDLERKFACDICDKKFHLLKLLTRHIYAAHREKKRNHTCEICGKSFFTNYHLEKHKLQHLDKSERLVEGTKCQHCGEWIATKSGVFYHQQIHTSGPQKCEHCQLEFPNRVSLLGHIRRYHRENKFKCNYCDKAFTTASLLRAHEESHTRHRVYPCLYCDKTFSLRISLSSHMGRYHPEQRKLLKEMRKMKRFPAANKDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -