Smos017283.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000003.1:2289156-2301246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.87 52 4.7 1.9 1 23 8 30 8 30 0.90 2 14 0.0039 0.23 12.1 1.8 2 23 281 303 281 303 0.96 3 14 0.0005 0.03 14.9 0.2 2 23 317 339 316 339 0.95 4 14 0.001 0.061 13.9 1.3 2 23 397 419 396 419 0.96 5 14 6.2 3.7e+02 2.0 0.2 2 23 431 452 430 452 0.84 6 14 0.0023 0.14 12.8 1.4 2 23 703 725 703 725 0.96 7 14 0.0005 0.03 14.9 0.2 2 23 739 761 738 761 0.95 8 14 0.0085 0.51 11.0 1.6 2 23 819 841 818 841 0.96 9 14 1.3e-05 0.00076 19.9 3.4 2 23 857 879 857 879 0.97 10 14 0.12 6.9 7.5 0.2 1 23 942 964 942 964 0.93 11 14 3.4e-06 0.00021 21.7 1.6 1 23 1200 1224 1200 1224 0.92 12 14 0.012 0.72 10.6 0.7 1 23 1231 1254 1231 1254 0.91 13 14 2.2e-05 0.0013 19.2 3.3 1 23 1260 1282 1260 1282 0.98 14 14 8.1e-05 0.0048 17.4 0.8 1 23 1343 1366 1343 1366 0.97
Sequence Information
- Coding Sequence
- ATGACTGCATCTATAGCAGTGCatcaatgtttgttttgtccGCAAACATTCAACCATGCCGCTGATAAAGATGATCACACTCTGGAGCACTTTGCTCAAGAGACTTGTGCCGACTGCAATCaaaatttgattcgaatcgGTGCCGATTTGTACACTCTACATGACACAGTGACGTGCATCAAGAGAGCCGTGAAGAAAGAACATTGCTTATCAACCTCTGCTACAACGGATCCGTTGGTGCCGAATGAAAATCCTCTTGATTTCGATAGTGTAAATTGTGGTGGTGGCTTTGCTGCTATTGCGATCAGTTCTAAATCAATTTGCGCCCAACAACTAGAAATTAAAAGAGAACCAGCTGATGTCGGATACAGTCAACAGCTTGACGACCCGttccattcaaataaaattgaacctAACCCAAATTGTACCAAATTTTCATGCGAATATTGCCGGAAAGAGCTTTTATCGGAGCCGACATTGGATATTCATGTCAGAAATTGCAAGTGGAAAGAGAAATTGGAGAGTGAGCGTACTAACAAAGTTGATGACATGGTCGAAAAGAGATTAATGCCTAGCAGTAGCGACGTTGAACAACAAGGTAAACAGCAAATAGCACACCAAGAAAATCTGTTTGTCATAGAAAAAGGGTTGGAAGCGGATTATTCATTGATTGGGGAATCCAATGTTAAGGGAGAATCAGAAATTGATATTGATATGCCTGAAAGATATGAACAAGATGAATTCGATGACTCTGACGAAAGTATGGATCTAAGCGACTTTCAAGAAATTAAGATGGCAATTCGAacgcaaatggaaaatgaaaagatgGTCAACGAACGTCAGTGTAACATTTGCCACAAGATTATGAGCTCCGCCCAATCTCTCCGTAGTCACATGAAATGGAATCACAATTCGAACTTCAAAAAACCCGATCAAAGAGCATATATAAAGTGTGATGTTTGTGACCGAATACTTTACAATAAAGGCAACCTGCAGAGACATAAGATAAGTGTACATGGCGCACCGCACTCTCGTGCTTCGTCGTCGACGATTCAGCTGCCTGAAAATAGTgaacaagagaaaattgaagaCTTTGGTGAACGTATGCATCTAAACGGTAATCAAAAGCTTGAAACGGAAGTTCAATcgcagaagaaaaatgtagCGAATTTGATGGTTGGTGAAAATCAATGCAGTATTTGCCACAAGATTATGAGCTCAGCCGACTCTCTCCGTAATCACATGAAATGGAATCACAATCGTGATCCGAATTTCAAGAAACGCAATCAGAAATGCTTGTTCTGTCCACAAACATTCGGCAGTGCCGCTGCAAAAGATGATCACACTCTGGAGCACTTTGCCCAAGAGACTTGTGCCGACTGCAATCaaaatttgattcgaatcgGTGCCAATTTGTATACTCTACATGACACAGTGACGTGCATCAAGAGAGTTGTGAAAAAAGATCATTGCTTATCAACCTCTGCTACAACGGATTCTTTGGTGGCGAATGAAAATCCTCTTGATTTCGATAGTGTAAATTGTGGTGGTGGCTTTGCTGCTGTTGCGATCAGTTCTAAATCAATTTGCGCCCAACAACTAGAAATTAAAAGAGAACCAGCTGATGTCGGATACAGTCAACAGCTTGACGACCCGttccattcaaataaaattgaacctAACCCAAATTGTaccaaattttcattcgaatattGCCGGAAAGTGCTTTTATCGGAGCCGACATTGGATATTCATGTCAGAAATTGCAAGTGGAAAGAGAAATTGGAGAGTGAGCGTAGTTACAAAGTTGATGACATGGTCGAAAAGAGATTAATGCCTAGCAGTAGCGACGTTCAACAACAAGGTAAACAGCAAATAGCACACCAAGAAAATCTGTTTGTCATAGAAAAAGGGTTGGAAGCGGATTATTCATTGATTGAGGAATCCAATGTTAAGAGAGAACCAGAAATTGATATTGATATGCCTGAAAGATATGAACAAGATGAATTCGATGACTCTGACGAAAGTATGGATCTAAGCGACTTTCAAGAAATTAAGAAGGCAATTCGAacgcaaatggaaaatgaaaagatgGTCAACGAACGTCAGTGTAACGTTTGCCACAAGATTATGAGCTCAGCCGAATCTCTCCGTAATCACATGAAATGGAATCACAATTCGAACTTCAAAAAACCCGATCAAAGAGCATATATAAAGTGTGATGTTTGTGACCGAATACTTTACAATAAAGGCAACCTGCAGAGACATAAGATAAGTGTACATGGCGCATCGCACTCTCATGCTTCGTCCTCGGCGATTCAGCTGCCTGAAAATAGTgaacaagagaaaattgaagaCTTTGGTGAACGTATGCATCTAAACGGTAATCAAAAGCTTGAAACGGAAGTTCAATcgcagaagaaaaatttaacgaaTTTGATGGTTGGTGAAAATCAATGCAGTATTTGCCACAAGATTATGAGCTCAGACGACTCTCTCCGTAATCACATGAAATGGAATCACAATCGTGATCCGAATTTCAAGAAACGCGATCAGAAAACATATGCAAAATGTGATGACTGTGACCGAACGTTCTTCCATAAAGGCAACCTCCAGAGACACAGACAGAGTGTACATGaCTTGAAATCCGATCCCATTTTCAACGGTATTGATTGGGACAAAGTAGATAAAAAGGCGTCAGATGCACCATTTCCACCAAAACCGTATTTGCCATTGAAGCCTGATGCAAATTTTACCGTCAACTTGAAGGGCGATCCGATCGAATTGGAAAAAGAACTCCAAATAGCCGAAATCTTTGACGTGCATCAATGTCTGATTTGTCAGCAAACATTTGATAGTGCCGCTGACAAAGACGATCACATTCTGGGGCATTTTTCTCAAGAAACTTGCGCGgaatgcaatcaaaatttgattcgaatcgGTGGATATTTATATGTTCGACACAATGAAGCGACATGCATAAAGAAGGTACCAATATCAGGAGACCCTTTGGAATGTGATGAAGGTAGCACTGCCACAAGTTTGGTGATTTTGAATGCCTTTAGCATGAGAATGCCAGAAATCAAAACAGAACCAGTTGATCAACATGAGAATGAAGACATCTTGATAGATACTGATAACTTTGAACCAAacattttgaagaaaacagACGTGATGCATACAGCCCAATCAAAGATCAAACAGGAAGTCTTGGTGCAGGAAAATCATGAGCAAATTAATGAATGTGAGTCAACTGAGCAGTGTGAAATTGAACCTGAGACTCAAACACATGCATTACGCATCTGGCATGTGAActtgaatgatgaaaatctcAACATGCAGGCAGAATACCCAGATCCGGCTAACACAATCGAGATTTCTAATTCTccgaaaaaaccaaattaccCGAGCAGCACGTGTGATGAATCCTTTCAAAGTGTACGAGGAGAAGATAATCTGACTGGGATAAAGTTCGGAATTAAATTGGAAGAACTGTTGATTGACTCCTCACCTAATGAGCTACAGAGCCAACAAGATGATAGTGACCAATGCGATGATGGCGATGCAACATTCGtgatgcaaaattcaaagGAACAATTCATTTGCGAAATATGTAAAAAAGAATTCTCAAAGCGTAGTAATCTCCAAGATCAcattcgtcgtcgtcgacacGGACCTAAcgcaaacaaatttaaatgtaGTATATGTGGGCAATTATGTATTAATGAACGCAAGCTGCAAACGCATATTGGGGAAATCCATTTGAATCTAAAAAAGTTCAGATGCAATGCGTGCGAAAAGTCttttaaatataaatcacATTTAATACAACATGAACGAGTTCACAAGGtgcatcaatttttgttttgtgagCAAACATTCGATAGTGCCGCTGACAAAGACGATCACATTCTGGAGCATTTTGCTCCTGAAACTTGCGCCGCATGCGATGAAAACTTGATTCGAATCGTTGGATATTTGTATGTTCGGCGTCACATGTATATCCATGACccaaataaatggaaattcaaatgCGATTCATGCGAGACGTCATTTGCTAACAAATCCGaattaaaaatacattttgaaacCGAGCATTAA
- Protein Sequence
- MTASIAVHQCLFCPQTFNHAADKDDHTLEHFAQETCADCNQNLIRIGADLYTLHDTVTCIKRAVKKEHCLSTSATTDPLVPNENPLDFDSVNCGGGFAAIAISSKSICAQQLEIKREPADVGYSQQLDDPFHSNKIEPNPNCTKFSCEYCRKELLSEPTLDIHVRNCKWKEKLESERTNKVDDMVEKRLMPSSSDVEQQGKQQIAHQENLFVIEKGLEADYSLIGESNVKGESEIDIDMPERYEQDEFDDSDESMDLSDFQEIKMAIRTQMENEKMVNERQCNICHKIMSSAQSLRSHMKWNHNSNFKKPDQRAYIKCDVCDRILYNKGNLQRHKISVHGAPHSRASSSTIQLPENSEQEKIEDFGERMHLNGNQKLETEVQSQKKNVANLMVGENQCSICHKIMSSADSLRNHMKWNHNRDPNFKKRNQKCLFCPQTFGSAAAKDDHTLEHFAQETCADCNQNLIRIGANLYTLHDTVTCIKRVVKKDHCLSTSATTDSLVANENPLDFDSVNCGGGFAAVAISSKSICAQQLEIKREPADVGYSQQLDDPFHSNKIEPNPNCTKFSFEYCRKVLLSEPTLDIHVRNCKWKEKLESERSYKVDDMVEKRLMPSSSDVQQQGKQQIAHQENLFVIEKGLEADYSLIEESNVKREPEIDIDMPERYEQDEFDDSDESMDLSDFQEIKKAIRTQMENEKMVNERQCNVCHKIMSSAESLRNHMKWNHNSNFKKPDQRAYIKCDVCDRILYNKGNLQRHKISVHGASHSHASSSAIQLPENSEQEKIEDFGERMHLNGNQKLETEVQSQKKNLTNLMVGENQCSICHKIMSSDDSLRNHMKWNHNRDPNFKKRDQKTYAKCDDCDRTFFHKGNLQRHRQSVHDLKSDPIFNGIDWDKVDKKASDAPFPPKPYLPLKPDANFTVNLKGDPIELEKELQIAEIFDVHQCLICQQTFDSAADKDDHILGHFSQETCAECNQNLIRIGGYLYVRHNEATCIKKVPISGDPLECDEGSTATSLVILNAFSMRMPEIKTEPVDQHENEDILIDTDNFEPNILKKTDVMHTAQSKIKQEVLVQENHEQINECESTEQCEIEPETQTHALRIWHVNLNDENLNMQAEYPDPANTIEISNSPKKPNYPSSTCDESFQSVRGEDNLTGIKFGIKLEELLIDSSPNELQSQQDDSDQCDDGDATFVMQNSKEQFICEICKKEFSKRSNLQDHIRRRRHGPNANKFKCSICGQLCINERKLQTHIGEIHLNLKKFRCNACEKSFKYKSHLIQHERVHKVHQFLFCEQTFDSAADKDDHILEHFAPETCAACDENLIRIVGYLYVRRHMYIHDPNKWKFKCDSCETSFANKSELKIHFETEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -