Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: L
Assembly: GCA_009176505.1
Location: VUAH01006165.1:2097403-2110801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.2e-05 0.0055 17.2 3.5 1 23 191 213 191 213 0.97

2 18 0.58 35 5.3 5.7 1 23 219 241 219 241 0.98

3 18 1.6e-06 9.5e-05 22.8 4.0 1 23 247 269 247 269 0.99

4 18 1.5e-05 0.00087 19.7 0.2 1 23 275 297 275 297 0.99

5 18 0.0071 0.42 11.3 0.8 2 23 409 431 408 431 0.96

6 18 0.55 33 5.3 0.2 2 23 573 594 572 594 0.96

7 18 0.00038 0.023 15.3 0.6 1 23 603 625 603 625 0.97

8 18 0.0019 0.11 13.1 1.6 1 23 633 657 633 657 0.91

9 18 0.67 40 5.1 0.1 2 23 663 685 662 685 0.91

10 18 0.056 3.4 8.4 0.6 1 23 692 715 692 715 0.97

11 18 0.0017 0.1 13.2 2.6 1 23 753 775 753 776 0.96

12 18 7.9 4.7e+02 1.7 1.4 2 23 940 963 938 963 0.86

13 18 0.00093 0.056 14.0 0.6 2 23 972 994 971 994 0.96

14 18 0.13 7.8 7.3 0.1 1 23 999 1021 999 1021 0.93

15 18 1.7 1e+02 3.8 0.1 2 23 1029 1050 1029 1050 0.95

16 18 0.00031 0.019 15.5 1.7 1 23 1149 1171 1149 1171 0.95

17 18 0.005 0.3 11.7 0.3 1 23 1181 1203 1181 1203 0.97

18 18 0.0041 0.24 12.0 0.4 1 23 1210 1232 1210 1232 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.2e-05	0.0055	17.2	3.5	1	23	191	213	191	213	0.97
2	18	0.58	35	5.3	5.7	1	23	219	241	219	241	0.98
3	18	1.6e-06	9.5e-05	22.8	4.0	1	23	247	269	247	269	0.99
4	18	1.5e-05	0.00087	19.7	0.2	1	23	275	297	275	297	0.99
5	18	0.0071	0.42	11.3	0.8	2	23	409	431	408	431	0.96
6	18	0.55	33	5.3	0.2	2	23	573	594	572	594	0.96
7	18	0.00038	0.023	15.3	0.6	1	23	603	625	603	625	0.97
8	18	0.0019	0.11	13.1	1.6	1	23	633	657	633	657	0.91
9	18	0.67	40	5.1	0.1	2	23	663	685	662	685	0.91
10	18	0.056	3.4	8.4	0.6	1	23	692	715	692	715	0.97
11	18	0.0017	0.1	13.2	2.6	1	23	753	775	753	776	0.96
12	18	7.9	4.7e+02	1.7	1.4	2	23	940	963	938	963	0.86
13	18	0.00093	0.056	14.0	0.6	2	23	972	994	971	994	0.96
14	18	0.13	7.8	7.3	0.1	1	23	999	1021	999	1021	0.93
15	18	1.7	1e+02	3.8	0.1	2	23	1029	1050	1029	1050	0.95
16	18	0.00031	0.019	15.5	1.7	1	23	1149	1171	1149	1171	0.95
17	18	0.005	0.3	11.7	0.3	1	23	1181	1203	1181	1203	0.97
18	18	0.0041	0.24	12.0	0.4	1	23	1210	1232	1210	1232	0.95

Sequence Information

Coding Sequence: ATGGCTTTAAAAATGCTTTACCGTGGGCCGAGTACACGTCTTGAAACacttattgaaaaaattcaacaaaataaagacAGTAGCCCAGTAGATATTGATTCATCAAATACATCACCAAGCTATTCGCCGTCACTTCCTGACATGGCATCAACTCCAAATTTCGAAGTGGATAATATTCTTAGcattaataacaataataaaatcacagcgaaacaacatcatcatcatcatcagcagcagcagcagcagtatcATCATTCGGAGCATTCACTTGGTGAGAATGGTGGTATAAATGAGAACATATTGCCCGAACGGGATGAAAAGCATGATGAAGAAACGGGAACCACACCGGCAATGAAAGGAGCTCAACGTATATCATCGGAAACAGGGGTTGCCTATTCGCCGATCAACGCCACTATTAAAGTATCGTCAAGAGTGCATAGCGAGCAACCCACAATGACGACAGCAAAGAGCAAAGGGGAAGGCAGTCGACTCGGAAAATATGCTAAAATTAATGGAACCACATCACAATTACCATCAAATGCGACTAACAATAACGTCGAAGGCTCTTATCATTGTCAGTTTTGTGATAAATCATTTCCCAGGCTGGGATACTTAAAAAAGCATGAACAGAGTCATGCGGAGCacatgccattcaaatgtgaatattGCGCACGATTGTTCAAGCACAAGAGGTCACGGGATCGACATACAAAACTACATACGGGAGATCGGCGCTACCGCTGTCCACACTGCGAATCCGCTTTTTCAAGAAGCGATCACTTGAAAATACACATGAAGACCCACGACAATCAAAAACCATTCCAATGCACAGTTTGTAATCGTGGCTACAATACGGCCGCTGCGTTAACCTCCCACATGCAGAGCCACAAGAAGCAAGCAGCACTTCAAAGGAACAGTACATTAAACTACAGCCCAAGATCCACGGGGTCAGCGTCAAGTAGCAACAGTTTATATAAACGCAAATACTCACCACATATTGATCAACGAGATACCCCAAGCCAGTCTTCGCTTTTGGCTGTCAATGCTAAACGCTTTGCCTATCACAGCAACAATACCTCAATTTTGTATTGTATCTACTGCACTAagaatgatttcgaaaatttggAGCAATTACATTCTCATGTTCAACAAATGCACGCTATTGTTTTGCGAGAGGCAGCAGCAAGTCCATTTTCTGGAATTAGCCCTAGTCTTCATTTGACGTGTGAATTTTGCACCATGAAGTTTCCATCGATTTCTAGTATGTTTCAACACATTCGTTCGATGCATATAGATCGAATTGGTAATCCAGCCACTTACATGGAACACATTGGTAGACGATCGACTGGTTTCGCCGATGCAAATGACAATTACCGTCGAAAGTCTAGCGAAAATTTTGTGCATCCACTCGAGTATTCGAAACCCGAAGAAAATCATCTTAAACACGAATCAAACACATCGAAAGGCGAACACGATACAACTGGAAAAAATCTAAATGAACAAGCAAAGCACCTTCAAAATGGTGACGTTAAACAAGATGATTTACCGACCGAtttgagcaacaaaaaatcggaatcgaaattgagtgaaaaacgTGAAGATTCCAACGAAGTGAATCACTCACCAAATAACAGCCCAATCGATTCATATGTAAACCGAAAGCGACTACAAAAAACTACACCCGACTTCACGAATACCAGTCCAGATCCATTGCGATGCAGTCAATGCACTTTGATCCTCCCAAACATTGAAGCTTTCCGTGATCATCTTCGAAATCATTTGGTACGTGGCGAGTTGAAGAACTTTGTGTGCTTCCAATGCGGTCTCACATTCACCAACCAAAACGAGTACGAATTGCACGTCTCATCCCATTTCTTAATCAGTACCACAGAGTATACGTGTTCGTTTGGGtgtaataaacattttgttaaCGCTGAAAGTATGCAAAAGCACTTGTTTGATGCGCACGCTCAAAATGTTTGGAAGTGTGGTATTTGTTACGAAATTTTCGAgtcaaaaatggcaatacaaattcattttgcgaTGACACATTCAAATAAAGAGGACTCATTTAGGTGCTCAGCATGTATGGAAGCGTtcgaaacagaaaatgaatttaaaaaccACGTACGAACGCAGCATTCATTAATGCTTTCACTGCCAAATCTGCAATGTTCCCTATGTAGAACGGTTTGTTCGTCTGAGCTAGAGATGCATTTTCACATGGCAACTCATTCACGGCAAGGAGTTGCATTCCGTTGCACCTTATGTCCAGAGGCATTTCATATAGAGTTTCTTTTAGAACGCCATATGCAAACACATCACTGTCTTCCGGAGAAGGATTCGCTGGGACCGTATAAGATCGATAATCTTAACAACAACATGTTTGACTACAGTTATGCGGCAAAGAAACTCTACCCTTTTAGCACCGGAGCAGGACCAACGAAACTCTTTGATTCACTGAACAtaccatcatcatcgtcaagCCCTGCATCATTGAAACTACCGCCTCCGTTGTACGAACTTTATGATAACATCGGAAAAACGTTTTCACAGCACACTCACACtctttcgaaacatttttcaaatatttccaaatCGTTTTCCGAACATTTGGACCAATcgcaacaattttcaaaaccaTTTGCGGAACATTCGCCAGAAATTCCATCGTTCTTAAACTTGTACAAATCGGAATATGCATCGAAAAGTTTTCTAAGATCCAATCCACTGGTATTCATGCCTCCAACGTCTACCGCCGATCAACAttacaatgagaaaaaagcatCTGCTGACACACCACTCGCATGCAATGTCTGCAATATCTGCGATCGCAAAGACTTCCAAAGTGAATTGGAAATGTTGACACATCAAAAGATCACACACAATATGAAAACCGGCGTTAGCCTCAATTGCGCCTATTGCAACGACAACTTCCGGTCAAGAAACGAACTGGAAAATCACATGAAAACAGTCCACACCGGTGGCAAGCACAAATGCTTGATTTGTGACGAAATTTTCCCATCGGCGGATATTCTCGCTGAACATAAGCTGAATCATTCGAAAGTTGGGGTTCAGGGGAAATGCACCTACTGTTCTGCAAATTTGCCGGATATCCAAGGCTTCAAATCTCATATGGCCGAGCACGGAAATGTTGAATTACCGGTTCAGTGCATCTGCTGTCGCCAAACATTGAGTTCACAATTCGAAATCGATCTGCATGCCAAGTTTCATGTGAGTTCATCATCCAGTGATGGTGAGGAGCGCAACTGTGCACTGTGTTTAGTCGCACTGCCACCCAAATATGGATCGAAAGTGTGCAAAAAATGCTacgaaaaacacaacaatcaCAACAAACATGCTGCATATTCCCTTTCAAAGGAGATCGACCTAACAGTAAAAGAAACtattttgaaatcgaatattgAACCATTGCCTGACCATCATTGCAATCTGTgcaaaaaaccattttcaactGCAACCGAATTGGAAGAACACCTAATTGAGCATTCGTTTCGAGGATGCGAGGAGCGTGGCTACAATTGTTACATATGCTCAGCGATTTTCACTCTGCCGTCTGGATTGCATCAACATATGATAGAACACGGTCCAAGCTATCGTCCGTATGACTGTAATCTTTGCGCCAAAAAGTTCTATTTCCGAGCCGAACTCGAGAATCATCTCATTGATCATGAGTCTGGCCGCATCAGCACCACCCCGGTGCAAACACCATTAGATGTGCATGCAAATACATCGAATGGCATAAAACgagaacaaaaccaaatgataGACTCGAACGAAGACAGTGATAGCGAAAAAGACATCAATCCTGATACTAACATCAAATCCGAATGTCAGCAATATTCGACTGAAACAAACGCTGAAGAGGACGACGAGTATATTGAAGTTGAACAGATTGGTGAGAACATCTCTGTCAATGGGGAGATGAACAATGGCAATCGACTAAAAAGCCCAGAGATTGACGATCAACGTGAAACATCATGCGAAAAGGACTGTTTGAGTgatgaaatataa
Protein Sequence: MALKMLYRGPSTRLETLIEKIQQNKDSSPVDIDSSNTSPSYSPSLPDMASTPNFEVDNILSINNNNKITAKQHHHHHQQQQQQYHHSEHSLGENGGINENILPERDEKHDEETGTTPAMKGAQRISSETGVAYSPINATIKVSSRVHSEQPTMTTAKSKGEGSRLGKYAKINGTTSQLPSNATNNNVEGSYHCQFCDKSFPRLGYLKKHEQSHAEHMPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQSHKKQAALQRNSTLNYSPRSTGSASSSNSLYKRKYSPHIDQRDTPSQSSLLAVNAKRFAYHSNNTSILYCIYCTKNDFENLEQLHSHVQQMHAIVLREAAASPFSGISPSLHLTCEFCTMKFPSISSMFQHIRSMHIDRIGNPATYMEHIGRRSTGFADANDNYRRKSSENFVHPLEYSKPEENHLKHESNTSKGEHDTTGKNLNEQAKHLQNGDVKQDDLPTDLSNKKSESKLSEKREDSNEVNHSPNNSPIDSYVNRKRLQKTTPDFTNTSPDPLRCSQCTLILPNIEAFRDHLRNHLVRGELKNFVCFQCGLTFTNQNEYELHVSSHFLISTTEYTCSFGCNKHFVNAESMQKHLFDAHAQNVWKCGICYEIFESKMAIQIHFAMTHSNKEDSFRCSACMEAFETENEFKNHVRTQHSLMLSLPNLQCSLCRTVCSSELEMHFHMATHSRQGVAFRCTLCPEAFHIEFLLERHMQTHHCLPEKDSLGPYKIDNLNNNMFDYSYAAKKLYPFSTGAGPTKLFDSLNIPSSSSSPASLKLPPPLYELYDNIGKTFSQHTHTLSKHFSNISKSFSEHLDQSQQFSKPFAEHSPEIPSFLNLYKSEYASKSFLRSNPLVFMPPTSTADQHYNEKKASADTPLACNVCNICDRKDFQSELEMLTHQKITHNMKTGVSLNCAYCNDNFRSRNELENHMKTVHTGGKHKCLICDEIFPSADILAEHKLNHSKVGVQGKCTYCSANLPDIQGFKSHMAEHGNVELPVQCICCRQTLSSQFEIDLHAKFHVSSSSSDGEERNCALCLVALPPKYGSKVCKKCYEKHNNHNKHAAYSLSKEIDLTVKETILKSNIEPLPDHHCNLCKKPFSTATELEEHLIEHSFRGCEERGYNCYICSAIFTLPSGLHQHMIEHGPSYRPYDCNLCAKKFYFRAELENHLIDHESGRISTTPVQTPLDVHANTSNGIKREQNQMIDSNEDSDSEKDINPDTNIKSECQQYSTETNAEEDDEYIEVEQIGENISVNGEMNNGNRLKSPEIDDQRETSCEKDCLSDEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -