Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01003615.1:41551-43443[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00037 0.022 15.3 1.4 1 23 206 228 206 228 0.98

2 11 0.018 1.1 10.0 3.8 1 23 235 257 235 257 0.98

3 11 0.00061 0.037 14.6 0.8 1 23 262 285 262 285 0.94

4 11 0.32 19 6.0 1.1 1 23 292 314 292 314 0.95

5 11 0.00056 0.033 14.7 0.4 3 23 322 343 320 343 0.94

6 11 0.016 0.95 10.2 0.1 3 16 348 361 346 363 0.87

7 11 0.15 9.2 7.1 0.2 1 23 374 396 374 396 0.95

8 11 9.6e-06 0.00057 20.3 2.1 1 23 402 424 402 424 0.97

9 11 1.7e-06 9.9e-05 22.7 4.3 1 23 430 452 430 452 0.99

10 11 7.5e-08 4.5e-06 26.9 1.4 1 23 458 480 458 480 0.98

11 11 5.1e-06 0.0003 21.2 1.5 1 23 486 508 486 508 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00037	0.022	15.3	1.4	1	23	206	228	206	228	0.98
2	11	0.018	1.1	10.0	3.8	1	23	235	257	235	257	0.98
3	11	0.00061	0.037	14.6	0.8	1	23	262	285	262	285	0.94
4	11	0.32	19	6.0	1.1	1	23	292	314	292	314	0.95
5	11	0.00056	0.033	14.7	0.4	3	23	322	343	320	343	0.94
6	11	0.016	0.95	10.2	0.1	3	16	348	361	346	363	0.87
7	11	0.15	9.2	7.1	0.2	1	23	374	396	374	396	0.95
8	11	9.6e-06	0.00057	20.3	2.1	1	23	402	424	402	424	0.97
9	11	1.7e-06	9.9e-05	22.7	4.3	1	23	430	452	430	452	0.99
10	11	7.5e-08	4.5e-06	26.9	1.4	1	23	458	480	458	480	0.98
11	11	5.1e-06	0.0003	21.2	1.5	1	23	486	508	486	508	0.97

Sequence Information

Coding Sequence: atggatGGAAGTTCATTGGAGTATTTTTGCCGCGTCTGTGCAACGGAAACAAATCattatcatttatttgaaacaaatcatAATGGAATCCAGTTGGCCGAGACGCTAATGCACTGCTTGAAACGGCCAGTGAACAAAATAGACGGCCTCCCGAAATATATTTGCCCGAATTGTAAGACGAATTTAATATTCACCTATGAATTTCATAACCTTTGTGAGGCGAGCGAgcaatattttatgaaaagaTTACAACCGCTAAACCACCAAAATACCGACGAATTTAAGACATTTCCAAATGTTGAACCACCATCAATACACGctataaatgaaaatgcaatcgatgcacacataaaaattgaaaacgactATGAATTGGGAACGACAGCGGTAGCGGCGATGTCGGGGATTCTTCAACCGCCGAATATTGTTGACGATGGCAACGACAGTTTGGAGTTTGATATTCAGCCAACCATGCTCAGTGATGAAATCGGGAGTAAATCATCGCAAATGCCAATTGGTCGGTTAAGACAAAGACGCAATACGACGAAAGCGAAAGCCACACAAGCTGTGACGCTACGACGAAGTCGACACAAAGCCAATGAAGAAGATAAAGTGTTTGAATGTTtcgaatgcagaaaaacaTTCCAGCTGTTGAATGACCTGCGACAACATATGAACGAGCATAACAACATACGGAAGCCATTCGAATGTACCACGTGTAATATGCGTTTCATTCACATAAACAGTTGGTTTCGGCATCGGTCGAGACACACCAAAAACATTCATGAATGTGAATATTGCTCAGAGTCATTTAACACACTCACCGCTGTAAAGCAACACATTCAGGATATGCACAAGGATCATCTAAAAGCCTACAAATGCGATCAATGCGCCGAGGAATTTGCTTTGCATTTCCTACTAGTGTTACACCATGAATGGCATAAAAAAGCCAAACCGATCATCTGCAGCACTTGTAACATGGTTTTCTTCAATGAACGCAAATTAAAAGCACACATTCGAGACAATCATGCGAACCATTTGTGTGCGGAGTGTGGAAAATCCTTCAAAACTATTCATTCGTTGGCCAGCCTCCAGATGCTGCACACCGAAGAAAAGCCCTTTGCCTGTGATCTATGCCCAagtaaattcaaatggaaagcCGCATTACGAACTCATTCCCTCGTTCATTCTGGGCAGAAACAGCACGTTTGCGACATTTGTGGCTCATCATTCACAACCAAAGGATCGATGAAAAAGCATAAAAGAATACACACCGGTGATCGACGATATCAATGCGACACTTGCTCGCTAAGATTCTATAGTAACGACCATTTGAAGCGCCACATAAGAACCCATACCGGCGAGAGACcATACATTTGTACATACTGTCCGCGTTCATTTTCGCAAAGCAACGATTTGACAAAGCACTTGCGTTCGCATGTGGGCCAAAATATGTATCAATGCAGTGATTGCGGTGAATCGTTTCGACTTCAAACCGAACTACGAAAACATTCCTTCACCCATTACAATAAGGACGATAATTCAGATACGCTCAAAATGGAAGAGCAGCAATAA
Protein Sequence: MDGSSLEYFCRVCATETNHYHLFETNHNGIQLAETLMHCLKRPVNKIDGLPKYICPNCKTNLIFTYEFHNLCEASEQYFMKRLQPLNHQNTDEFKTFPNVEPPSIHAINENAIDAHIKIENDYELGTTAVAAMSGILQPPNIVDDGNDSLEFDIQPTMLSDEIGSKSSQMPIGRLRQRRNTTKAKATQAVTLRRSRHKANEEDKVFECFECRKTFQLLNDLRQHMNEHNNIRKPFECTTCNMRFIHINSWFRHRSRHTKNIHECEYCSESFNTLTAVKQHIQDMHKDHLKAYKCDQCAEEFALHFLLVLHHEWHKKAKPIICSTCNMVFFNERKLKAHIRDNHANHLCAECGKSFKTIHSLASLQMLHTEEKPFACDLCPSKFKWKAALRTHSLVHSGQKQHVCDICGSSFTTKGSMKKHKRIHTGDRRYQCDTCSLRFYSNDHLKRHIRTHTGERPYICTYCPRSFSQSNDLTKHLRSHVGQNMYQCSDCGESFRLQTELRKHSFTHYNKDDNSDTLKMEEQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -