Smos004568.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000017.1:1660704-1663236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00097 0.058 14.0 1.1 2 23 52 73 51 73 0.95 2 15 0.00054 0.032 14.8 0.1 1 23 179 201 179 201 0.98 3 15 0.56 33 5.3 0.9 3 23 209 230 208 230 0.96 4 15 0.23 14 6.5 1.6 1 23 285 308 285 308 0.95 5 15 0.062 3.7 8.3 1.4 1 20 362 381 362 384 0.94 6 15 0.0033 0.2 12.3 1.0 1 23 389 412 389 412 0.96 7 15 6.3e-05 0.0038 17.7 4.0 1 23 441 463 441 463 0.98 8 15 0.00017 0.01 16.4 1.3 2 23 468 489 467 489 0.96 9 15 8.2e-05 0.0049 17.4 3.7 1 23 497 520 497 520 0.97 10 15 1.7e-05 0.001 19.5 1.4 2 23 539 560 538 560 0.97 11 15 0.022 1.3 9.7 3.3 1 23 567 591 567 591 0.95 12 15 0.42 25 5.7 0.9 1 14 598 611 598 619 0.85 13 15 0.0024 0.15 12.7 1.2 1 23 625 648 625 648 0.97 14 15 4.1e-05 0.0024 18.3 1.1 1 23 653 675 653 675 0.98 15 15 0.0075 0.45 11.2 1.2 2 23 683 705 682 705 0.95
Sequence Information
- Coding Sequence
- ATGtatcaaattgaaagtgtttttattgGCGAAAGCCAACATGGTGAACCTCTAATAAAATCTGAAGTACAAACAGAAAtcataaacaatttcaaagtGGGTGATGTAACAATGATAACGAGAATGGACACTAACAATTTTACCCTAAATTTAAACTGTGCACAGTGTTCACGAAGCTTTCGGAACTTCCCCGAATTTACTAAACACATTGAAAAGCATTTCTTACACGGAGACGTTTTCATCTCAAACGATATTACCAGTGATAATGctatgaaaaatgaatcaacaaaGACAACCACAGCAgcagtagaagaagaagaagagggtTTTatcaatgatgaaaatgagcCAGAAATTCCAGATGATGAAATGGAGTACATGAACGAGAGCGTGTGGAATAACCAATTTATGGTCGAATGTGATCTacaaaccgaaaatgaaatcaaacatcCGACATATGATGGAACAGCACCAGCTACGTTCGATTTATCACAATTCGTCGAAGGAGTCACATACAAAAAGgttgaaaatgtgtatgaaTGCATGATTTGTGGTTTCCAGAGTGTCATGAAAAGTAATCTCAAGTCACACATTGCAGTGCatgtgaaagtgaaaaatgttttctgtTCGATATGTATGAAAGGATTCGGAAGTGTCCATTACGCCCAAAAGCACATTAAATCTATACACAAAGAAACTATATCAGCCGAAGCCATAAGGAAGGCACAGAAGACGCTAAGTCAAATtgtgaaaccgaaaaaatccgatcgaaatggaaatgcgCCAGATGAAGTGTCAAAGCTGAAGCTCAATTTACTCAGTTCAAATTATTGGCGCACGGAAGGCAAACGCTATCACTGCGTGTTTTGCGTGCAGTGGTTCAAAAATCCCAAGTATGTACAAAAACACATTCGTCTAGTTCACGGCCGAACCATCGGACTTGACGATATTTTGGCTGCTCAAATACAACCCGAACTAAAACCCGAGCCAACGAAATCGGTTGAATTGGTCACGCAAAAGCAAATCGAGTCATTGCGAAGGGAACAGGCGCAAACAGATGTGAGCAACCGTGTGAAATCATCATTTGAATGCTTTGCATGCCACACGAAATTCGTATCGGAGAAGGCACTTCGATACCATATGCCCTTGCACGAAGGAATCCAGTACAAATGCCCGCTGTGCGAAAAATTCTTCCAGTTGCCGAAATATGTGCGAGATCACATGATCTATAAAcatgattttgataaaaagtcaaaattaCCACCGctgaaaacgagaaaaattgaaaattttgagtATCACAAGCCGGTAGTGTCCAGATTTGAATGTTATTTGTGCCATCGAACGTATCCGTCGAGaagtaaattaaattcacaCATGAAGAGTCATTTGGATATTTTGGAGTGTAGTGTTTGTACAAAGGTATTCAAAAGCACTGAATCGAGGCGTCGACACATGCAACTCCATTCGGCTGATCCCAATCTGCAGCATCATTGCTCACTATGCGATAAAGCATTTCCaGTGCGGAGATATCTCATGTCCCACATGCGCACTAGCCATCGAAATCCCAagtcgaaaattgaaaaaccacCAAAAGCTCCTCCGAAAATGTTGACTTGTGACATTTGCCAGAAAATCTTCGACAAACAAGGAATGTTCAACAAACATATGAAACGTCACAACAAGGAACCAACGAGTTTCATGTGCGACCACTGTGGTGagaatcgattcgaaaatcGTCACCTGTTGCGAAGGCATCTTTCGTCGGtacataaaattaataaaaagtatttcaaatgcaatgtATGTCAAAAGGTAGTATCGAAGAAGCGAGAAGAGGAGCATATGAAATTCCACACGGGCGAAAAAGATCATCAATGCGAAATATGCGGTAGTCAGTATGTAACCGAAGGTCTtttaaatacacacaaaaaacgccAACACGCCGGTTGTAAATATGAATGTGATGTTTGCCCGGAACGATTCGATCAGCCGAAGAAATTACTACATCACCGACGCTTGCATACCGCTGAACCGATGGATATCACTTGCAGTATTTGTAATCTTGGATTTTTCAACGTAAGATCACTGACGAAGCACAAATTAAAAAAGCATGGGCAACGAACTGATGCCCCCATTGAGAGCGACAGTGAAAGCGATACAGATATTAAAGCCGAATAA
- Protein Sequence
- MYQIESVFIGESQHGEPLIKSEVQTEIINNFKVGDVTMITRMDTNNFTLNLNCAQCSRSFRNFPEFTKHIEKHFLHGDVFISNDITSDNAMKNESTKTTTAAVEEEEEGFINDENEPEIPDDEMEYMNESVWNNQFMVECDLQTENEIKHPTYDGTAPATFDLSQFVEGVTYKKVENVYECMICGFQSVMKSNLKSHIAVHVKVKNVFCSICMKGFGSVHYAQKHIKSIHKETISAEAIRKAQKTLSQIVKPKKSDRNGNAPDEVSKLKLNLLSSNYWRTEGKRYHCVFCVQWFKNPKYVQKHIRLVHGRTIGLDDILAAQIQPELKPEPTKSVELVTQKQIESLRREQAQTDVSNRVKSSFECFACHTKFVSEKALRYHMPLHEGIQYKCPLCEKFFQLPKYVRDHMIYKHDFDKKSKLPPLKTRKIENFEYHKPVVSRFECYLCHRTYPSRSKLNSHMKSHLDILECSVCTKVFKSTESRRRHMQLHSADPNLQHHCSLCDKAFPVRRYLMSHMRTSHRNPKSKIEKPPKAPPKMLTCDICQKIFDKQGMFNKHMKRHNKEPTSFMCDHCGENRFENRHLLRRHLSSVHKINKKYFKCNVCQKVVSKKREEEHMKFHTGEKDHQCEICGSQYVTEGLLNTHKKRQHAGCKYECDVCPERFDQPKKLLHHRRLHTAEPMDITCSICNLGFFNVRSLTKHKLKKHGQRTDAPIESDSESDTDIKAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -