Smos014059.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- ZFY
- Assembly
- GCA_009176505.1
- Location
- VUAH01006225.1:19508192-19512357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0029 0.17 12.5 0.3 1 23 230 252 230 252 0.98 2 11 0.00024 0.014 15.9 3.2 1 23 258 281 258 281 0.96 3 11 4.9e-05 0.0029 18.1 1.9 1 23 287 309 287 309 0.98 4 11 0.00018 0.011 16.3 1.9 1 23 315 337 315 337 0.97 5 11 0.023 1.4 9.6 4.0 1 23 343 365 343 365 0.98 6 11 5.8e-07 3.5e-05 24.1 0.5 1 20 371 390 371 391 0.96 7 11 0.067 4 8.2 3.4 1 23 400 420 400 420 0.96 8 11 3.8e-06 0.00023 21.6 0.1 3 23 428 448 427 448 0.98 9 11 2.5e-05 0.0015 19.0 1.1 1 23 454 476 454 476 0.99 10 11 0.0019 0.11 13.1 1.0 1 23 482 508 482 508 0.96 11 11 0.015 0.91 10.2 3.6 1 20 514 533 514 535 0.93
Sequence Information
- Coding Sequence
- ATGAAACGCGCTAATGTTATCGATACTAAAGGGATAATGGTTACTGGTGCAACTTCATCAAAACGTTCCTATCAGTTGCGCGGCCCGGCAACAACAAACCCCAAACGATCGCCTTCAACTAACAAAATTTCGGTTCAGGGTGGAAAGAAATTGAGTACAAATAACAGTGATCAATCCCATGAAAATGCAACTAGCGACAATTCGATGGGTTCGGATACACAGGCCAATCGAACAAGACGCAGTAGCATGCGACTAGGATCACGTAATACAATATCGAATGTAGGTGGTGTGAAAACGCGCACAAAACGCACTATTCCAGATAACAACCGTGCTACAATCGGCAACAAGAAAAGTAAAACGACTCCGCTTCCATCTTCTCCTCctccaccaccatcaccatcatcatcaccaccaccaccatcaccactaCCATCTGCGTTGTCTCCGCAACCAACAAACGATACGGACGATGTTGTGGACAATGGTCGAAAAGTTCGCggttcaaaatcaataattagAGATAGTAAAAATGGTGTTGGTAACAGTAATCATATTAACGGTAGCCATAATAATAACGATCATGATAACATTGTGGAGGATACTGATCCGATTGATAGTAGTGATGACAAAACCGATACGAATTCatcaacaaaaccaaagaCGAAGCGCATCCGTACTAAACGTAGATATATTTGTAACTTCTGTGACAAAGAGTTTTTAGGTGGCAACGATTTGCGCAAACACATTCGCATCCATACCGATGAGCGACCATTCGAGTGCCAGCACTGTGGCCAACGATTTCGACAGGGTGGATGCCTGAAAAATCACATCGCTTCGCAACATGGCACTTCCGAAACATTTACATGCTACTATTGCAACAAATCGTTTCCGATCAAAGAACGACTTCGACTGCACATGCGACTACATAGTGGCGAGAAACCTTACCACTGCAAAATTTGCTTCAAGCGCTTCGCTCGTGGTGGCCAGTTGACCCAGCACCTGGCAAGCCATTCGGGCGTGAAGAAATATCGTTGCACCCAATGCTCGAATTCATTTTCGTGTTCggtcaatttgaaattgcatgTAAAAAGCCACTTGAATGTTCGTGACTATACGTGCCATCTTTGTGGTAAATCATTTGTACGGCCAGATGCTTTGAAAAAACACTTGACATGCTTCCATGAGAATGTGAAGGCCTTTTTCTGCAGCATTTGCTCACGAACATTCAAGGGTCATTTGCCGCAGCACATGCGAACACATGAAAATGTTAAATCGCACGGATGCGCCAATTGTGGTGCAACATTCTCACAAAAATCCCAGCTAATCGTTCATCAGCGCATCCACTCGGGTGAACGACCATACCGATGTCAGGTGTGTTGGCAAGCGTTTGCCCATTCGAGCGTACTGAAGTTGCACATTCGTAAGCACACCGGCGAAAAGCCGTTCAAATGTTCGGTGTGCAAAGACACGGAGACGGCATTCTCACAATTGCCACATTTGAAAACGCATATGAGAGCCATTCATGGCATGGACAAAGTCTACCATTGTGAATTCTGTTCggaatattttaaaacaaagcACGAACTCCAGGagcataaaatcaaatgttcgAAAGCACCAAAAGTGTCGGAGCACCAGGTTGACGATCAATTTGGTGGCCATCATGCAGCGGTTGAACCGAAATGCTCGACCAAAGAAACCACACTATCACGTATGCGGCTACTGATTGCGGTGCTATTGAAGAAGATTTCATCACAGGATCGACTCAAGCAGCTCGGATTTGATAAGCGATTGATTGACAATGTGCTGATGGATGCACTTAAAATGGCCGGCCAAGATGTAGTCACCGACACCAAACTACATGAAGTTGAACGCTTGCGGGCAAATGTGAAAATCTTCTTGGACTGGTCCATACCGGATACatacatgaaaaaattcaaaaatgaacagCGCAGCACCGAAGAATTGCTTGAGGACCTCACTAGTAATTTTAATCGTCAGCCAAAAAAAGCatag
- Protein Sequence
- MKRANVIDTKGIMVTGATSSKRSYQLRGPATTNPKRSPSTNKISVQGGKKLSTNNSDQSHENATSDNSMGSDTQANRTRRSSMRLGSRNTISNVGGVKTRTKRTIPDNNRATIGNKKSKTTPLPSSPPPPPSPSSSPPPPSPLPSALSPQPTNDTDDVVDNGRKVRGSKSIIRDSKNGVGNSNHINGSHNNNDHDNIVEDTDPIDSSDDKTDTNSSTKPKTKRIRTKRRYICNFCDKEFLGGNDLRKHIRIHTDERPFECQHCGQRFRQGGCLKNHIASQHGTSETFTCYYCNKSFPIKERLRLHMRLHSGEKPYHCKICFKRFARGGQLTQHLASHSGVKKYRCTQCSNSFSCSVNLKLHVKSHLNVRDYTCHLCGKSFVRPDALKKHLTCFHENVKAFFCSICSRTFKGHLPQHMRTHENVKSHGCANCGATFSQKSQLIVHQRIHSGERPYRCQVCWQAFAHSSVLKLHIRKHTGEKPFKCSVCKDTETAFSQLPHLKTHMRAIHGMDKVYHCEFCSEYFKTKHELQEHKIKCSKAPKVSEHQVDDQFGGHHAAVEPKCSTKETTLSRMRLLIAVLLKKISSQDRLKQLGFDKRLIDNVLMDALKMAGQDVVTDTKLHEVERLRANVKIFLDWSIPDTYMKKFKNEQRSTEELLEDLTSNFNRQPKKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -