Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: Bcl11a
Assembly: GCA_009176505.1
Location: VUAH01000001.1:12592461-12595013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.13 7.9 7.3 1.1 3 20 101 118 99 120 0.93

2 12 0.078 4.7 8.0 1.9 2 19 127 144 126 147 0.90

3 12 0.023 1.4 9.7 1.6 1 20 151 170 151 171 0.96

4 12 0.62 37 5.2 1.4 1 23 266 288 266 288 0.96

5 12 0.0014 0.085 13.5 7.4 1 23 294 316 294 316 0.99

6 12 1.9e-05 0.0011 19.4 0.9 1 23 319 341 319 341 0.98

7 12 0.00087 0.052 14.1 1.5 3 23 351 372 349 372 0.97

8 12 8.6e-07 5.1e-05 23.6 0.2 1 23 395 417 395 417 0.98

9 12 3.7e-07 2.2e-05 24.7 2.6 1 23 423 445 423 445 0.99

10 12 2.2e-05 0.0013 19.2 0.5 2 23 452 473 451 473 0.96

11 12 2.3e-06 0.00014 22.3 2.5 1 23 481 503 481 503 0.98

12 12 0.00021 0.013 16.1 1.6 1 23 509 533 509 533 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.13	7.9	7.3	1.1	3	20	101	118	99	120	0.93
2	12	0.078	4.7	8.0	1.9	2	19	127	144	126	147	0.90
3	12	0.023	1.4	9.7	1.6	1	20	151	170	151	171	0.96
4	12	0.62	37	5.2	1.4	1	23	266	288	266	288	0.96
5	12	0.0014	0.085	13.5	7.4	1	23	294	316	294	316	0.99
6	12	1.9e-05	0.0011	19.4	0.9	1	23	319	341	319	341	0.98
7	12	0.00087	0.052	14.1	1.5	3	23	351	372	349	372	0.97
8	12	8.6e-07	5.1e-05	23.6	0.2	1	23	395	417	395	417	0.98
9	12	3.7e-07	2.2e-05	24.7	2.6	1	23	423	445	423	445	0.99
10	12	2.2e-05	0.0013	19.2	0.5	2	23	452	473	451	473	0.96
11	12	2.3e-06	0.00014	22.3	2.5	1	23	481	503	481	503	0.98
12	12	0.00021	0.013	16.1	1.6	1	23	509	533	509	533	0.94

Sequence Information

Coding Sequence: atgtcgattttttgCCGTTTATGTGCGGAGACAAAAGATCCATCCGAAATTGTCACATCGATTAATGATCCCGGACGATTGGtggaacaaaaattgattgccTGCTGTCAATGGAATCCGCAGAACACTGACTTCGAGCTACCACAAGATGTTTGTGAATTTTGCTACTATAAGCTGGAGAATAGTTGGTCGTTTTTACAAAGTGTGCACAAGGCACAGcgcaaaatacaaaatcattttgaCAAGGAAGTAGAATccacaacaaaagcaacaaacaagGCTTCAAAGACAAGATTCGGATGTTTTGAGTGCAACAGTACTTTTTCGTCGAGGCTTGCATTGGAAAAACATGAATGCGAATCGGTAGAccaaaatttgaaatgcaacaTTTGTCTAAAAACATTCAAAACGATTGACGGCTTCCGTGGCCATTGCCGAAAACAAGGCAAATACAAGTGCGATTTGTGTTTACAATTGTTCTGCACAAGTAAGGCGCTGGAGAGACACAAAGAAGACAgttgtgaaaatttaattggGAGCATAGAGGTGGTGGAGGCCAAACCCACCTTTATCGATTGCAATTCCGAAGTTGAACTGAATGGAGACAAAGAACCACCAGAACCAGAGCAAATAAACCAAGAACCAAAACCCGAAGTAGACCCAGAAATGGAGATAGAGGTGAAAGCGGTCGCTTTTGATATGGCTCCCATACGAATTCACcttgatttgaatgaagacGACAGCTCAGATCTTAGAATACGAAACAGTTTCCCAAAAGATGACACAAATCGCGAATATTATTGTTACTTGTGCTTGAGAAGaTTCAAAAAGTTTCCAATACTAAGGTATCATATGGCCGTACACACATTGCCGCGTAAATACAAGTGTCAGTATTGCAATTCACGCTTCCGTACTGAACGCCACTACACTTCTCATCAACAGAAACACGTTGATTACTTCTGCGATGTATGCCAAAAGAAATTCGCAAGTGCTTTTGCTCTGAAAGTCCATAAACGGATGCACACCGGAGCTAGTGTGAAAATGTATGGTTGCGAAGAATGTGACCACTTCTTTGTTGATGTGTCCACTTATTATAATCATATGAGACGACGACATGGACTCGATACGAAAGAAGCCAAGAAGAAAGCTAAACTCGTTGAACCAAATGGAACTGCCAAGCCCTATGTTTGTGAACAATGTGGAAAAGATTTCAAAGAAAGAAGCTCATTGAAAGCTCATTTATTGGTACACTTGGACGTACGACCATTCCAGTGCGAAGTTTGTTTCAAAGCGTTCAAAAATAAGTACAACTTAAAGACGCATCAGGAAACGCATAGCGGCGAAAAAACGGTGCAGTGTACGGAATGTGGGAAGAGATATAGCCGAAAGAGTATTTTGCTGAAACACATGGAAGAGCACACTGGTGTCTTCACACGCACCTTCCCATGCGATTTTTGCGATCGAACTTTCCGTTCTTTATACAATATGCAAAATCATCGTCGAACTCATACAGGCGAAAAACCATATCGATGTGATGTTTGCAATCATGATGTGACAACCAAATCGCAGCTCGACCGTCACCTGAAAACCATTTCCCACAttaacaaattaaatgaatccATGGTCATGGACGAAAGACAGAATTAcatgcaataa
Protein Sequence: MSIFCRLCAETKDPSEIVTSINDPGRLVEQKLIACCQWNPQNTDFELPQDVCEFCYYKLENSWSFLQSVHKAQRKIQNHFDKEVESTTKATNKASKTRFGCFECNSTFSSRLALEKHECESVDQNLKCNICLKTFKTIDGFRGHCRKQGKYKCDLCLQLFCTSKALERHKEDSCENLIGSIEVVEAKPTFIDCNSEVELNGDKEPPEPEQINQEPKPEVDPEMEIEVKAVAFDMAPIRIHLDLNEDDSSDLRIRNSFPKDDTNREYYCYLCLRRFKKFPILRYHMAVHTLPRKYKCQYCNSRFRTERHYTSHQQKHVDYFCDVCQKKFASAFALKVHKRMHTGASVKMYGCEECDHFFVDVSTYYNHMRRRHGLDTKEAKKKAKLVEPNGTAKPYVCEQCGKDFKERSSLKAHLLVHLDVRPFQCEVCFKAFKNKYNLKTHQETHSGEKTVQCTECGKRYSRKSILLKHMEEHTGVFTRTFPCDFCDRTFRSLYNMQNHRRTHTGEKPYRCDVCNHDVTTKSQLDRHLKTISHINKLNESMVMDERQNYMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -