Smos009055.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:9098694-9105391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0022 0.13 12.9 0.7 3 23 191 212 189 212 0.92 2 18 0.00031 0.018 15.6 0.4 2 23 228 249 227 249 0.92 3 18 0.015 0.92 10.2 1.3 1 23 256 278 256 278 0.98 4 18 0.0092 0.55 10.9 5.3 1 23 287 309 287 309 0.97 5 18 0.0004 0.024 15.2 3.1 1 23 315 337 315 337 0.98 6 18 2.1 1.3e+02 3.5 1.4 1 23 343 364 343 364 0.87 7 18 0.033 2 9.2 1.6 1 23 701 724 701 724 0.95 8 18 0.00063 0.037 14.6 0.7 2 23 731 753 730 753 0.96 9 18 2.3 1.4e+02 3.4 0.1 1 23 802 824 802 824 0.94 10 18 0.00041 0.025 15.2 0.3 2 23 855 877 854 877 0.97 11 18 5.9 3.5e+02 2.1 4.7 3 23 885 905 883 905 0.93 12 18 0.00015 0.0087 16.6 5.0 1 23 920 942 920 942 0.99 13 18 0.0093 0.55 10.9 0.5 3 22 954 973 952 976 0.88 14 18 0.00023 0.013 16.0 5.9 1 23 982 1004 982 1004 0.98 15 18 4.7e-05 0.0028 18.1 1.6 1 23 1009 1031 1009 1031 0.99 16 18 0.0033 0.19 12.3 3.2 1 23 1040 1062 1040 1062 0.97 17 18 0.00014 0.0086 16.6 5.6 1 23 1068 1090 1068 1090 0.97 18 18 0.0001 0.0061 17.1 0.7 1 23 1096 1118 1096 1118 0.95
Sequence Information
- Coding Sequence
- ATGtcgattgaatttgattttagaGCCAAAGCTGAGATTGCACCAGTAAATACTGGTCAACACATCCGGCCAAACATATTGAAACGGACAATACCATCAATCGGCCCAGCGACAAAGGTTATAAAACTCAAACAATCTCCACAGAACAATGTGCTAAACGGCCAAATaccttcaaatcaacaaaaaatttgtcTATCTTGCATTAAATATAAAGTACAACTGCAAGCGGCCCATGCAAAGAATGCGTTGTTGGAACAAAAATTGAGCAGATTGCAATTGGCCATGGCCAATCAAAATGGAACGGTGGACAATCGAATTGGACAAGAATCACCCGAAGATTTTACTCATCTCGAAGTATCAAGAGACGATATCAAACTCGAAAAACAGGATCCTCCGATTGGACATGTTGAACTGGTTTCaatcgatgaaataaaatcaaatgacctTTCAATGTTGCCCACTTCTTTGCTCAACGATGAGATAGTTGAACGATACaacgaatcaattgaaaaagtgGACTTAGCAAACGTGTCTGTCAAACAAGAGCAACGAATTCTCAAACCTCATCTCTGCGATGAATGTGGCAGAAGTTTTGCATCCGCACGGAGCCTAGATTATCATAAGAATTTAGAACATAATGAGAGGTCACATGTTGATAATGAAAAACGGACACAGGTAATACAGTGTCCAGACTGTCCAAAGACGTTCTTCCAAATGGACGCTTTCAAACGACATAACGTATCACATCGAGAAAATAAAGATAAATACGTTTGCCGAATCTGTCAGGCGGAACTTCAAACGAAGAAATCATACAGCAAACATATAAGGAAGCATCAAAGAACAGATGCCGACAGAAAATATGCCTGTCCGTTATGCGATCGAAAGTTCTTCtcatcaaatcatttgaaatgtcacCAGAAAGTACACATTAGCGTGAGATCGTTCAGTTGCAAATTTTGCAAGGCAAACTATAAATACAAAGGGGATTTGAACAAACATCTGAAGACTCATCTTGGgccaaaaattcatgaatgtCCAAAATGCTTTGAGCTATTCGAATACAAAGATCTccaaaaacatgaaatcgaacactacaaagaagaaaaacgagcgAAAGGAGAGTATGGATTTCATTGtgaactgaaaataaatactAATATCTTGCTTTGGATAAAATATCATTCAAGTATCCCAGTCAACGAAGACGCCCGAACAAAATGGATAAAGGCGATTGAGCACCACCAACCATTCGATGATAGTGGAACGGGTGTACAGTTAGTGTGCGTCAATCACTTTCAAGACAATGAAATCTTGCCTGGAATTCGTAAAAGAATATCTCCATCTGCAGTACCAAGCATTTTTCCaGCCAAAGCTGAGATTGCACCAGTAAAGACTGGTCAACACATCCGGCCAAACATATTGAAACGGACAATACCATCAATCGGCCCAGCGCCAAAGGTTAGAAAACTCGATCAATCTCCACAGAAGAATGTGCCAAACGGCCCAATTGAGAATAGTTTGGTCGGAAAGAAGGTGAGGTTAAATATTGGAAGTCTGAGAACTATGGCATCATTTGTCGGTGTCACCAAGGTGCCAAATGCAAGCACATCACTCGCAGCACCTGTACAACTTCCAGCACGAATTTCAAACGGTACAATTCAAACAATGACACTATCAAGTAGTCTAGTATCGCCTGGTGTGCAGGACAGTGAAAAATTCAACCCTTTGCAACCGATTGCAGATGAAACATCTCCGGAAGATAACATTTTCGAACAGCCGAGTTCAAGTGAGCCCATCGGACAACGACTGAAACTAGTTGACATTGACAAACTTAAAGAAACACCAATTTCATCCGAAGcggaaaacaaatcgaacgTTTTATATACAACAAATTGCTCGAATGAAGTTTGTCTCAACAAATTGTATCTTGCCAACGGTAGAGTGACGATTCTGGAAAAAACCATTACAAAATTGCGGCTTCACAATGCAGTTTTGAAACGAGAACTTGCCAAGAAGTCAAACACATCTGCAGGCAATGCATCTGCTGCAGCTAAAACGCCAACCAAAATGAATCAGCAATCCATTATGAAAACATGTTttttcaaatgtgcaaaatgtgcGGCATCATTTGAAAAACCGTTGGAGCTGAATAAACATATACATCACGTACACGTTCGATTGGAAGATAATAAATGCTATAATTGCGGAAAAAGGTTCGTTGGAACTGCACAATTGGAGGCGCATATTCATAAAGTGCATAGGGATATATTCGAATGTAAAGTTTGTCATCCAATGCTGAAATATCTGCAAGAATATCATATAGCACACGAAACACACGCCAAGACTGTGGATGCAGCTGCCAAGCCGCCTCAAGCGTTGAATAATTGCCCTGAAATACCTCGTTTCGAATGCTATATTTGCAAGGATGAAATAAACAGCATTACTGCTCTACAAACACACATGGAACAACATGAAAAGAACCAAAAATGCCAAATCTGCAAAGCAAGTCTCACACTCATCGAACTTAACAATACTCATTTGTGTGGCACGGAGAAGAGTATTACATGTGAATATTGTGAGGAGTCATTTACATCGACAATGAAGCTGTTGGAACATCTGAAAACACCgcacgagaaaaagaaattatatgGCTGCCATAAGTGTTCCAAGTATTTCCCTCAATTGAATTTGCGCCACTACCACATGTTTCtacatgaaaatgaagaaggaaaagaCGATGACGGCTCACTGAGAAGATATACGTGCAAAGTTTGCGACAAAGGATTTGATAACTACGATCATTTTTACAAACACCGAAAGTCTCACAGCAGtcccacaaaaaaaacaagagatcACCTTTGTGAAGAGTGTGGAATGAGCTTCATGACCGTACAAACTTTGAGAGCCCACAAGATGTCCAGCATTCATTCGAAAGAACCAACGTTTCAGTGTTCCGATTGCCCGCGAAAATTCtacaacaaaatacatttgcATCGACATGCTCAGAAACATGAGAATATCAAATACGTGTGTGATATTTGTAATAGGGAACTTCGATCAAATATGTCATATAAGAAGCACATGAGAAGACATAATCGTACAGAGGCGGACAGACGGCATGAATGTCAAATTTGCCACATGAAATTCTACGAACCGAAGGCCTTGACCAAACATAAATTAGTACACAACGGACACCGGGcTCATTCATGCCAGTACTGCGATTGCTCGTATAAATACAAGGGCGACTTGAACAAACACCTTCGtatacatttagatggtaaaATACATCAATGCACCATGTGTGATGAGAGTTTTTACTATCCAGAGGATTTGCAAGAACATATATATGACCATTACAAAAAAGACAAGGCCAACCGAGCGGCGGAAGGAACGGCCGAAGGTAATGCGGAGGCCGATAGCAAGGAGGAGAAGAAtgacgaaaaagagaaagacgATGAAGAGAATAATGATTGCGTCTCGAACAATATATTGGTATCATCTGTTTCCCTTAAACCTAGTTTTATACATGAAAATGTACAGCTTTGGAACTGA
- Protein Sequence
- MSIEFDFRAKAEIAPVNTGQHIRPNILKRTIPSIGPATKVIKLKQSPQNNVLNGQIPSNQQKICLSCIKYKVQLQAAHAKNALLEQKLSRLQLAMANQNGTVDNRIGQESPEDFTHLEVSRDDIKLEKQDPPIGHVELVSIDEIKSNDLSMLPTSLLNDEIVERYNESIEKVDLANVSVKQEQRILKPHLCDECGRSFASARSLDYHKNLEHNERSHVDNEKRTQVIQCPDCPKTFFQMDAFKRHNVSHRENKDKYVCRICQAELQTKKSYSKHIRKHQRTDADRKYACPLCDRKFFSSNHLKCHQKVHISVRSFSCKFCKANYKYKGDLNKHLKTHLGPKIHECPKCFELFEYKDLQKHEIEHYKEEKRAKGEYGFHCELKINTNILLWIKYHSSIPVNEDARTKWIKAIEHHQPFDDSGTGVQLVCVNHFQDNEILPGIRKRISPSAVPSIFPAKAEIAPVKTGQHIRPNILKRTIPSIGPAPKVRKLDQSPQKNVPNGPIENSLVGKKVRLNIGSLRTMASFVGVTKVPNASTSLAAPVQLPARISNGTIQTMTLSSSLVSPGVQDSEKFNPLQPIADETSPEDNIFEQPSSSEPIGQRLKLVDIDKLKETPISSEAENKSNVLYTTNCSNEVCLNKLYLANGRVTILEKTITKLRLHNAVLKRELAKKSNTSAGNASAAAKTPTKMNQQSIMKTCFFKCAKCAASFEKPLELNKHIHHVHVRLEDNKCYNCGKRFVGTAQLEAHIHKVHRDIFECKVCHPMLKYLQEYHIAHETHAKTVDAAAKPPQALNNCPEIPRFECYICKDEINSITALQTHMEQHEKNQKCQICKASLTLIELNNTHLCGTEKSITCEYCEESFTSTMKLLEHLKTPHEKKKLYGCHKCSKYFPQLNLRHYHMFLHENEEGKDDDGSLRRYTCKVCDKGFDNYDHFYKHRKSHSSPTKKTRDHLCEECGMSFMTVQTLRAHKMSSIHSKEPTFQCSDCPRKFYNKIHLHRHAQKHENIKYVCDICNRELRSNMSYKKHMRRHNRTEADRRHECQICHMKFYEPKALTKHKLVHNGHRAHSCQYCDCSYKYKGDLNKHLRIHLDGKIHQCTMCDESFYYPEDLQEHIYDHYKKDKANRAAEGTAEGNAEADSKEEKNDEKEKDDEENNDCVSNNILVSSVSLKPSFIHENVQLWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350794;
- 90% Identity
- iTF_01350794;
- 80% Identity
- iTF_01350794;