Smos005356.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitodiplosis mosellana
Gene Symbol
ham
Assembly
GCA_009176505.1
Location
VUAH01000075.1:216915-279733[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.037 2.2 9.0 1.1 1 23 209 232 209 232 0.94
2 9 0.0015 0.088 13.4 3.3 1 23 239 262 239 262 0.93
3 9 6.5e-08 3.9e-06 27.1 0.5 1 23 268 291 268 291 0.97
4 9 8.8e-05 0.0052 17.3 1.1 1 23 297 319 297 319 0.97
5 9 5.2e-05 0.0031 18.0 4.1 1 23 325 347 325 347 0.99
6 9 0.0033 0.2 12.3 1.6 2 21 355 374 354 375 0.95
7 9 4.5e-07 2.7e-05 24.5 0.7 1 23 738 760 738 760 0.98
8 9 4.2e-07 2.5e-05 24.6 1.4 1 23 766 789 766 789 0.97
9 9 0.00013 0.0075 16.8 6.4 1 23 795 817 795 817 0.99

Sequence Information

Coding Sequence
ATGTCGAAACGAAGTGAACGAAGTAGAAGTTCATTGCCGGACGATTTTCACCCGAATTTTCTGGTTCGCAAGCGAGAGAGGTCAGCTGAACGGATGCCAATCGAACTGACCACACAAATACCACCACCGCCCGAATTGGATATACAAAATGGATCGATTCATGCAAAATTCACGCTGCCGCGCGGCTACCGATTTGGACCATATGCCATCAAATGGACCAATGAACCAACAGATAGAAATGTAGCGTGGGAGATAATCTCAGCTCCAGGCATTAGTGGATGGTTGGAACCAGTCCCACAATTGATCCAATGGCTCAAGGAAATGAAAACCGTTTTTGTTGATCATGAAGCAAATGTTAAGTGTTGCTTCGTTCACACTGGATGTATATGGTACGAAGTTTTACGTGACATTCCAGCCGGCGATGAATTATTGCTCACATCGAAAGTTCCTTTAAATCTTAGAGATATGTTTTATGACAACAGTGATAAAGAAACAGGCTCCCAGCATAGTGGCGCTATCGAGGAAGATTTTGGCACCGCTCACGATTTACAAAGTAACAAAAGTGATTTAAATATATCGATCGACGCAGATCCGGAAGCAAGTGACGACGAAGGACGCATTGAATTTCAGTGTCCTGAGTGCGAAAGGCTGTGCGTCGATCTCGAACAACTTGACAGTCATTTGATCTTGTGTCACAACTTTAAAAAAGACAATTATCGTTGCGAACATTGTTCGCAAGGTTTTTCGCATCGCCCATCACTTCTGCGACATAAAGCATTGCAACACGGTGAAGTTCGGAGGTTTCCTTGCGAAAACTGCTCAAAGGTATTCACTGACGCATCTAATTTGCAAAGGCACATTCGTAACCGACATAAAGGTGCCCGCGCCTATCCCTGCAGTGAGTGTGGCAAAACATTTGCCACTGAATCTGGTCGCAAACAACATACCCACATCCATTCATCGGTGAAACCGTTTCAGTGCGAGGTTTGCTTAAAGGCGTACACGCAATTCTCAAACTTGTGCCGACACAAGCGCATGCACGCCGATTGTCGTATGCAAATCAAGTGCCAGAAGTGCACCCAAAGTTTCAGCACGGTCACCTCGTTATCGAAACATAAGCGATTTTGTGATACGACATCGGGTCCACCATCCATTACATCTCAACAGCATTCAAATTCGCTATCATCGCCACCAAACAGTGCAACACATTCGAATCAATCGTTTTTGGGCTCACCTGTACCACAATTACCAATGGCTTCACGTCCAAATCCATTCTTGATGTTGCCCGGATCGGCACCATTCTTTACACCCGGTTTCCCACCATACACACCAGATTGGCAGCgcattttccatcaaaatggTGCCGCACAAACGCCATTCCCATTGCTGTTCCCAACGGCACAACATGCATTGGACCGGCCAACGCAACCCGAAGGAAAAACCCCGGTTCGATCATTGTCCGCTGCTCAAGAGAATTCAATCAAAGTGTCACCACCGACAGCCGAAGAAGCTTCAAGTAACTTAATACCGTCACCGAGTCGCCCGATCCCCATCAGCATGCAACATCCTTCGaaaatttacaacaacaacaataatagcTCAAAGAAAAACAGCAACGAAGACAATTACATTCGAAATGAGCCGGTGCGATCGCCTGAACGCTGCCAAAAACGCTCGAAATCATTCTTGAGCATTGAAGAATTGACGATGAAGAAagaaaccaaacgaaaaaccgATAATTCCGACTCGGAATACAATTCACCAccgaaacaacgaaaaatgtctGATGCAGATGAAAAGGATACATCAACAGCATCTGAGCAACCGCTTGACTTGTCACTGAACAAAAGTTCCAAACGAAGTGAAAGTGCATCACCGGTTGAGGAGCCAAAATCAAAACTGTTCCGCGCTTCGCCAACGCCGTCACCATCGCCCGAGCCGTCCTTGTCATTGTCACCGTCACCACCAAATCCACCGATGGCATACCCACGACCGATTCATCCAATGCTTCTGGAAGCATTCTACAATCAACAACGCGGATTTCAGCGGCCGTTCCCCTTTTTACCCCATTTGACACGAGCACCCGTTGATATGTTGGGCGGTGGTGCGGCCTTTAGCAAACCCTTCCATGATGCCCTAATGGCAGCTGGTGCTGGATTTCCACCAAGCCTAAATAACAGCCATCACAATGGTGGAAAAGCTAAGGATCGTTATGCCTGCAAATTCTGCGCAAAAGTTTTCCCGCGATCAGCCAATTTGACGAGACATCTGCGCACCCACACCGGTGAACAACCATatcaatgcaaatattgtGAACGATCATTCAGCATTTCCAGCAATTTGCAACGACATGTgcgaaatattcacaataaaGAAAAGCCGTATCGGTGTCATTTGTGTGAACGTTGCTTCGGACAACAAACTAATTTGGATCGACACTTGAAGAAGCACGAAACCGATGTGAACGGTTTGGGGCTAAGCGCCGGTGATTCGCCATCATCGAACGAATTGGAATCCGAGGAAAACTGTTTCGACGAAATTCGTCAATTCTTTGGGAAGGTCACGTATTCAGAAGGCATATACACACCGAGCAGTGTTGCAACAGCCGAAGGCGGTGAAATAGATGACGGAAGCGACATTGATGCTGATATTGTTGTCGACAAAGAGCCCATTAACAATAACGAAGCCGTGGAAGTTTCGATTTAA
Protein Sequence
MSKRSERSRSSLPDDFHPNFLVRKRERSAERMPIELTTQIPPPPELDIQNGSIHAKFTLPRGYRFGPYAIKWTNEPTDRNVAWEIISAPGISGWLEPVPQLIQWLKEMKTVFVDHEANVKCCFVHTGCIWYEVLRDIPAGDELLLTSKVPLNLRDMFYDNSDKETGSQHSGAIEEDFGTAHDLQSNKSDLNISIDADPEASDDEGRIEFQCPECERLCVDLEQLDSHLILCHNFKKDNYRCEHCSQGFSHRPSLLRHKALQHGEVRRFPCENCSKVFTDASNLQRHIRNRHKGARAYPCSECGKTFATESGRKQHTHIHSSVKPFQCEVCLKAYTQFSNLCRHKRMHADCRMQIKCQKCTQSFSTVTSLSKHKRFCDTTSGPPSITSQQHSNSLSSPPNSATHSNQSFLGSPVPQLPMASRPNPFLMLPGSAPFFTPGFPPYTPDWQRIFHQNGAAQTPFPLLFPTAQHALDRPTQPEGKTPVRSLSAAQENSIKVSPPTAEEASSNLIPSPSRPIPISMQHPSKIYNNNNNSSKKNSNEDNYIRNEPVRSPERCQKRSKSFLSIEELTMKKETKRKTDNSDSEYNSPPKQRKMSDADEKDTSTASEQPLDLSLNKSSKRSESASPVEEPKSKLFRASPTPSPSPEPSLSLSPSPPNPPMAYPRPIHPMLLEAFYNQQRGFQRPFPFLPHLTRAPVDMLGGGAAFSKPFHDALMAAGAGFPPSLNNSHHNGGKAKDRYACKFCAKVFPRSANLTRHLRTHTGEQPYQCKYCERSFSISSNLQRHVRNIHNKEKPYRCHLCERCFGQQTNLDRHLKKHETDVNGLGLSAGDSPSSNELESEENCFDEIRQFFGKVTYSEGIYTPSSVATAEGGEIDDGSDIDADIVVDKEPINNNEAVEVSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00367482;
90% Identity
-
80% Identity
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