Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000019.1:991751-993713[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.01 0.61 10.8 0.9 1 23 112 135 112 135 0.94

2 13 0.51 31 5.4 2.7 1 23 159 180 159 180 0.95

3 13 0.00069 0.041 14.5 3.3 1 23 186 208 186 208 0.97

4 13 0.062 3.7 8.3 4.2 1 21 214 234 214 236 0.93

5 13 8.2e-06 0.00049 20.5 1.3 1 23 242 264 242 264 0.97

6 13 8.6e-06 0.00051 20.5 0.4 1 23 270 292 270 292 0.97

7 13 8.1e-06 0.00048 20.5 0.8 1 23 298 320 298 320 0.97

8 13 0.004 0.24 12.1 0.5 1 23 330 352 330 352 0.96

9 13 0.0071 0.42 11.3 1.3 1 23 358 380 358 380 0.98

10 13 0.00014 0.0082 16.7 2.7 1 23 391 413 391 413 0.97

11 13 1.5e-06 9.2e-05 22.8 0.5 1 23 444 466 444 466 0.97

12 13 4.9e-06 0.00029 21.2 1.3 1 23 472 494 472 494 0.99

13 13 0.83 50 4.8 5.0 1 23 500 522 500 522 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.01	0.61	10.8	0.9	1	23	112	135	112	135	0.94
2	13	0.51	31	5.4	2.7	1	23	159	180	159	180	0.95
3	13	0.00069	0.041	14.5	3.3	1	23	186	208	186	208	0.97
4	13	0.062	3.7	8.3	4.2	1	21	214	234	214	236	0.93
5	13	8.2e-06	0.00049	20.5	1.3	1	23	242	264	242	264	0.97
6	13	8.6e-06	0.00051	20.5	0.4	1	23	270	292	270	292	0.97
7	13	8.1e-06	0.00048	20.5	0.8	1	23	298	320	298	320	0.97
8	13	0.004	0.24	12.1	0.5	1	23	330	352	330	352	0.96
9	13	0.0071	0.42	11.3	1.3	1	23	358	380	358	380	0.98
10	13	0.00014	0.0082	16.7	2.7	1	23	391	413	391	413	0.97
11	13	1.5e-06	9.2e-05	22.8	0.5	1	23	444	466	444	466	0.97
12	13	4.9e-06	0.00029	21.2	1.3	1	23	472	494	472	494	0.99
13	13	0.83	50	4.8	5.0	1	23	500	522	500	522	0.94

Sequence Information

Coding Sequence: ATGGATTGGaatgctgaaaataaaaacttgatCATCAAACAAGAACGAGAAGAAAGTCCATACATAAAAAAGGAACCTGTCCTCGATTCGGAGAATAATGAAGAGTCTTACAGCTTCACGAAAGATTGTGTGGACAGCGTTGAAATAAGTTGTGTACCATTTCTACAAGATTTAATTGGATATAATGTTGAACAAGAATTTATTGTTGGAGATGAAGAGGTTGATTTGTCGTCAGCGAGTTGCATTGAAGATCTGGCGATAATGCGTGTGATGGATAGTGATGACGAAGACTCTGAATCGGATTATAAGGAAAATATCAGCCAAGTGTCATTGTTCAACTGTGCATATTGTAATTTTGCTTGTTCCAATATAGACACATTGGCCAAGCATGTCACAGTGAACCATTGGTTggagaataaattgaaaaatcgacgaaTTCCCATGGAAAATATCATGAGCGGCATAAAACGAACGTATCAATGCTATTTGTGTGGTTATGAGTCGACTTACTCCAAACTGAAAGATCATTTCACAAAACACACCGGGAACAAAGATCATGAATGTAAAATTTGTGGAAAGCGTATTGGACGAAAGACTGATTTACATCGGCACGAATTACGGCatcagaaattgaaaaaattcaaatgttcgtATTGCCCGAAACAGTTTATGGAACGATCACAGATGCTGTATCATGAGCGCTGCCACACTGGCGAAAAGCCATACGCCTGTAAAAAATGTCCGATGCGATTCTCTTATGCATCCAGTTTAATGCGACACAACCGAAGTCATTTGGGGGAAAAACCGTATCAATGTAACATTTGCTTGAAACGGTTCACAGCCAAAGATAACCTCAAGGCCCATGCAAGCGTTCACAGCGATCTTAGGCCGTTTGTTTGCCAAATTTGTGGTAAAGCATTTAAAAGAAAGCGACTTTGGAGAGATCATAGCAAAATTCACGAAACTAACCGGTCTAATGAGATGCTATTCGCATGTGATGAGTGTCCATCAAAGTTTGCACATATCGCAGGCCTAAATCGTCATAAACAAAACCATGCCGGTGCTAAGCGTTATAGATGTGTCATATGttccattgatttttcaattcgtcAACATTACATGATACATATGGATAAACATTACAAGGATACACACTCAAATCTGATGTTGTTCAAGTGTAAACAATGTAATAAGCAATTCAACTCGAAGAAAGAATGGATGGCCCATAAAAAAGCGCATAAATCTTCCAGACGCACTATGTTAAACCAGCCAAATTATAAACTTAACCAAAATACAGCGGTGAATCGATTGACAGCCATTGAATCATCATTTGATTGCACGGTGTGCTCGAAAAGTTTTGCTTCGAGAAGTGGTCTCAAGCGGCACGTACAAATTCATTCTACCGATAAACGGTTCCAGTGTGAGATTTGCTCAAAAAGATTTCAGCTACAGAGCTATTTAACGGAACACATGAAAATTCATACTGGGGAGAAGACGTTCAATTGTATTCATTGCTCGAAAAGGTTTTTGAGACGATCAAGGTTGGAATTACACAAGCGATCACATTTGAATCAAGCCTATCTAGACATACAATCTGGTATTATTTCATTAGCCACGGATGATTGA
Protein Sequence: MDWNAENKNLIIKQEREESPYIKKEPVLDSENNEESYSFTKDCVDSVEISCVPFLQDLIGYNVEQEFIVGDEEVDLSSASCIEDLAIMRVMDSDDEDSESDYKENISQVSLFNCAYCNFACSNIDTLAKHVTVNHWLENKLKNRRIPMENIMSGIKRTYQCYLCGYESTYSKLKDHFTKHTGNKDHECKICGKRIGRKTDLHRHELRHQKLKKFKCSYCPKQFMERSQMLYHERCHTGEKPYACKKCPMRFSYASSLMRHNRSHLGEKPYQCNICLKRFTAKDNLKAHASVHSDLRPFVCQICGKAFKRKRLWRDHSKIHETNRSNEMLFACDECPSKFAHIAGLNRHKQNHAGAKRYRCVICSIDFSIRQHYMIHMDKHYKDTHSNLMLFKCKQCNKQFNSKKEWMAHKKAHKSSRRTMLNQPNYKLNQNTAVNRLTAIESSFDCTVCSKSFASRSGLKRHVQIHSTDKRFQCEICSKRFQLQSYLTEHMKIHTGEKTFNCIHCSKRFLRRSRLELHKRSHLNQAYLDIQSGIISLATDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -