Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006196.1:764987-769300[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.64 38 5.1 0.8 3 23 281 302 279 302 0.92

2 17 0.0037 0.22 12.2 1.8 2 21 344 363 343 364 0.94

3 17 3.9 2.3e+02 2.7 2.8 1 16 373 388 373 395 0.79

4 17 6.3 3.7e+02 2.0 0.1 5 23 406 425 403 425 0.88

5 17 0.00041 0.024 15.2 4.2 1 23 431 453 431 454 0.95

6 17 0.00012 0.007 16.9 0.7 1 23 461 484 461 484 0.97

7 17 1e-05 0.0006 20.2 1.5 2 23 495 516 494 516 0.97

8 17 0.048 2.9 8.7 0.8 3 23 566 586 564 586 0.95

9 17 0.36 22 5.9 3.7 1 23 593 615 593 615 0.98

10 17 0.00011 0.0063 17.0 1.7 1 23 628 653 628 653 0.97

11 17 0.00019 0.012 16.2 3.3 1 23 660 683 660 683 0.98

12 17 0.11 6.8 7.5 4.4 2 23 689 711 688 711 0.97

13 17 0.002 0.12 13.0 0.4 2 23 770 792 769 792 0.95

14 17 4.9e-05 0.0029 18.1 2.1 1 23 798 820 798 820 0.99

15 17 6.3e-05 0.0038 17.7 0.4 1 23 826 848 826 848 0.98

16 17 0.00075 0.045 14.3 0.9 1 23 854 876 854 876 0.98

17 17 0.00034 0.021 15.4 0.7 1 23 882 907 882 907 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.64	38	5.1	0.8	3	23	281	302	279	302	0.92
2	17	0.0037	0.22	12.2	1.8	2	21	344	363	343	364	0.94
3	17	3.9	2.3e+02	2.7	2.8	1	16	373	388	373	395	0.79
4	17	6.3	3.7e+02	2.0	0.1	5	23	406	425	403	425	0.88
5	17	0.00041	0.024	15.2	4.2	1	23	431	453	431	454	0.95
6	17	0.00012	0.007	16.9	0.7	1	23	461	484	461	484	0.97
7	17	1e-05	0.0006	20.2	1.5	2	23	495	516	494	516	0.97
8	17	0.048	2.9	8.7	0.8	3	23	566	586	564	586	0.95
9	17	0.36	22	5.9	3.7	1	23	593	615	593	615	0.98
10	17	0.00011	0.0063	17.0	1.7	1	23	628	653	628	653	0.97
11	17	0.00019	0.012	16.2	3.3	1	23	660	683	660	683	0.98
12	17	0.11	6.8	7.5	4.4	2	23	689	711	688	711	0.97
13	17	0.002	0.12	13.0	0.4	2	23	770	792	769	792	0.95
14	17	4.9e-05	0.0029	18.1	2.1	1	23	798	820	798	820	0.99
15	17	6.3e-05	0.0038	17.7	0.4	1	23	826	848	826	848	0.98
16	17	0.00075	0.045	14.3	0.9	1	23	854	876	854	876	0.98
17	17	0.00034	0.021	15.4	0.7	1	23	882	907	882	907	0.95

Sequence Information

Coding Sequence: atgaaaaaatccAAGGGAAATCGTTGCCAATGCTGCAATAAGACATCTgcagcaaaaattcatttggtatTCGATGAAGAGGGCAAAAGACGAAATATTGCTGCCGTTTTGCTCGATTACATCGGGAAATCGTTGAAAGAACAGGATGGAATAAAATATGTTATATGTGATGTGTGCTGGCAACAGTTAATACAATACAatgaatttaaagaaaaatgcattcgtGCCAATGAGATAACCAGTgatgacaatgacaatgatGAAGATAATGAAGATGACGAAACATCCGTACAAAATGAATCCTTGCAAACTGAAGATGGATATGAGGATAGTGAATATCTGGATGAATCACAATACGAATTGCCGGATGAATATGAAATGGATGTGGAATATTTAGAGGAAAATGACTCATTCGACGAAGAAAATGTATGCGAAACGAATGCGGAAattgagcggaaaaaagtGCAATTCGAGTTCACATCGATTATTGTGAAACCGATTTTCATACTGGAAATCGatAATCCAGAGGATGTGATGAGAATCAAGCAAAAGATATCAACTGGAATACCACGGCATACctttcgaacgaaaaatagaGGTAGGAAAGCAAATAGCCAGAATTTAGATGTGCAAAAAATTGCCACGTCCGATgatttgatgaatattttggAGGACGATTATCACAACGtaatcacatacacaaaaagtTCTCACGATAGTGACAATGACAGTGAATTTGAATACCGCTACGACGCCCATCCAGTTGatattaatgaatatttgaaatccaTCGCATCGATAACTTATGAGGAAACTTATGAATATGGAAATTATATCAATTGCACGCTCTGCTCCGAGGTGATAATAAGCCAACAGCACCTGGTCTATCACATCCACGAAAGTCATTCGCTGGCAGACGGTTTTCTGTGCCCGTTCGGTGAAAATTGTCCACCATTTGAAGATTTAGTCAAGGTTCAAGAACACATATTTCATGACCATGTTGATTCGATTCCAACTCAGCTATGTCTGACATGCCAAACATGTGAGAGAACATTCAAGTCTTCAGTTCAATTCGGCAAACATATGTGCGTCACGTTCGAAGACGACAGCATCAACTTTCAGTGCGCCAACTGTGATAAGAAATTGCGCTCGAAGAAACGATATTTATTCCAcactcaatttcatttggaaaatgcgCGTCCAAAAATCTGTATCATCTGTGAATTATCATTCGATAGCGAAGAATATTTTTACGATCATGTAATGTTTTCGCATGAACGTGTCTACGAATATTTTTGTGGCGAATGTGATAGgagtttttcatcaaatttccGCCTGAAGCTGCATAACCGAACACATCACGAACGAACCAAACGAACGTTTCAATGTAGCTCATGTGATAAGTCATTTGTCGATAAGAATATGCTCGATGAGCATATTTCCAGTAAGCATTCGGTTCGGGCGCAAACTGAGAAACTACTCGAATGTTCCGTTTGCCAAAAGGTCTACAATCGATCGTCTCGATTGAGAAAACATATGACGACACACGAGCGCCAGCAAAAGAATCGTGTGTTAGTTTGTGAACCGTGTTCGATGGCATTTGGTGGTATCGAAGATATCGATGAGCATTGCAATCGATTGCACGAAAACGACAATATCAATATCATTGAACGAGACATATTCTATGTGGTCTGTTGTGAGTATTGCGAGTCGGCTTTTGTTAACAATCAAAAACTTGTGCAGCACAAAGAAATCCATGCAAACGatgaaaaaccatttgtttGTGGTTTTTGTATGGCTTGTTACGAAACGTACAGCAAACTGAAGacacataaaaacacacacattagCCAACAGGTTAAATTTCCGGTACAAAGACTCTACATGTGCGATGTAGATGATTGCTTCAAACGTTATCGCCACTGGAGCGATCTGCTGAACCATCGAAAAACCGTGCATCTGATTAATCCATCAATTTACAAATGCAACGATTGTCAACAGACATTCTATCAGAGCTGGAATTTCAGCTACCACAAGAAAACGGTCCATTCGTCCACCGCAATGAAGTGCAAATTGTGtgattttgaatgcaaaactatgtatgttttgaaaaaccatcagaaaaaaatgcattcaactGACAATGATGTTGTCAAAGCCGAACATCCAAAGCCAAAAGCAAATCCAGAGTCGAAGCCGGAGCCAGATAAGAAGCCTAAGTCAAGGACAAAGTCTAAGAATGAATCAGTTCGATCGAAGAAATCGGCTGAAGTGGACCAATACTTTCGAAAATTAGACCAATCAATGGTATGCAATATTTGTGGCAAACAATTGGCGACACGGCACAGCGTCCGATCACACATCGAAATGatccatttcaaaattaaaaactaCACATGTGATGAGTGTGGCAAAGAGTTTTACTTGAAAAAAGACTTCAGAGATCACAAACGAATGCATACAGCCGAAACACCATACGAATGCGCTGTTTGcgcaaaaaaatatcgaactGCCTCAATGCTGAACGATCATCGAAGAAGTCATTCAAATAACCGACCTTATAGCTGCCCGTATTGTGCATCAACATTCAAGCGAGCCTATGTGTTGAAAAACCACGTAAAACAACATTTAGGTGTGAAGGGGTTTCCGTGCACCGTTGATAATTGTAAAAAAGAATATCGAACGCAGTGGGAATTGAATAGTCATCAACGGCTTAAGCATTCGAATTGCTACACAATGGATAGACAAGATGTCAACATGGAAGTATATACAGAGGGAGATGGAGACAtgtgcaatttatttaaagaagaaaaaccaatgaGAAATGAATCAGTggaggaaaaaacgaaaatcagtCCAAAGCCAAAGAAGCGccaaaataatcaacaaatCATTTACGTTATGCCTGGACCAGTCGAAGATGATATAATTGAGGGGCAGTCCAACGAAAACATTCTTGAAGAACAATTGAACATTCCCAATGAAGCCGATCACAATTATCTAGCGTCGGAAAATGAGACAGACACAAACGTTATTTATGTAGTCGATCCacaaatcacatcaaataGAGACATGaaaccaacaacaattttGGTTTGTAACCCCAATTTTAGTGACATGACGATCATGGATGTTGGTGCTATTCAAACCATCGATCAAGACGCTCAAGCGATCATTtcataa
Protein Sequence: MKKSKGNRCQCCNKTSAAKIHLVFDEEGKRRNIAAVLLDYIGKSLKEQDGIKYVICDVCWQQLIQYNEFKEKCIRANEITSDDNDNDEDNEDDETSVQNESLQTEDGYEDSEYLDESQYELPDEYEMDVEYLEENDSFDEENVCETNAEIERKKVQFEFTSIIVKPIFILEIDNPEDVMRIKQKISTGIPRHTFRTKNRGRKANSQNLDVQKIATSDDLMNILEDDYHNVITYTKSSHDSDNDSEFEYRYDAHPVDINEYLKSIASITYEETYEYGNYINCTLCSEVIISQQHLVYHIHESHSLADGFLCPFGENCPPFEDLVKVQEHIFHDHVDSIPTQLCLTCQTCERTFKSSVQFGKHMCVTFEDDSINFQCANCDKKLRSKKRYLFHTQFHLENARPKICIICELSFDSEEYFYDHVMFSHERVYEYFCGECDRSFSSNFRLKLHNRTHHERTKRTFQCSSCDKSFVDKNMLDEHISSKHSVRAQTEKLLECSVCQKVYNRSSRLRKHMTTHERQQKNRVLVCEPCSMAFGGIEDIDEHCNRLHENDNINIIERDIFYVVCCEYCESAFVNNQKLVQHKEIHANDEKPFVCGFCMACYETYSKLKTHKNTHISQQVKFPVQRLYMCDVDDCFKRYRHWSDLLNHRKTVHLINPSIYKCNDCQQTFYQSWNFSYHKKTVHSSTAMKCKLCDFECKTMYVLKNHQKKMHSTDNDVVKAEHPKPKANPESKPEPDKKPKSRTKSKNESVRSKKSAEVDQYFRKLDQSMVCNICGKQLATRHSVRSHIEMIHFKIKNYTCDECGKEFYLKKDFRDHKRMHTAETPYECAVCAKKYRTASMLNDHRRSHSNNRPYSCPYCASTFKRAYVLKNHVKQHLGVKGFPCTVDNCKKEYRTQWELNSHQRLKHSNCYTMDRQDVNMEVYTEGDGDMCNLFKEEKPMRNESVEEKTKISPKPKKRQNNQQIIYVMPGPVEDDIIEGQSNENILEEQLNIPNEADHNYLASENETDTNVIYVVDPQITSNRDMKPTTILVCNPNFSDMTIMDVGAIQTIDQDAQAIIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -