Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006164.1:718810-723232[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.45 27 5.6 0.1 1 12 108 119 108 122 0.90

2 11 0.011 0.64 10.7 1.2 1 23 236 259 236 259 0.96

3 11 0.00011 0.0068 16.9 2.1 1 23 291 313 291 313 0.97

4 11 0.14 8.5 7.2 0.5 1 13 344 356 344 365 0.75

5 11 5.2e-05 0.0031 18.0 0.1 1 23 371 393 371 393 0.97

6 11 0.00021 0.013 16.1 0.7 3 23 414 434 412 434 0.97

7 11 8.8e-07 5.2e-05 23.6 4.7 1 23 440 462 440 462 0.99

8 11 6.9e-05 0.0041 17.6 2.3 1 23 468 490 468 490 0.98

9 11 1.4e-06 8.1e-05 23.0 1.3 1 23 496 518 496 518 0.98

10 11 9.7e-05 0.0058 17.1 0.2 1 23 522 544 522 544 0.98

11 11 0.0004 0.024 15.2 0.3 1 23 553 576 553 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.45	27	5.6	0.1	1	12	108	119	108	122	0.90
2	11	0.011	0.64	10.7	1.2	1	23	236	259	236	259	0.96
3	11	0.00011	0.0068	16.9	2.1	1	23	291	313	291	313	0.97
4	11	0.14	8.5	7.2	0.5	1	13	344	356	344	365	0.75
5	11	5.2e-05	0.0031	18.0	0.1	1	23	371	393	371	393	0.97
6	11	0.00021	0.013	16.1	0.7	3	23	414	434	412	434	0.97
7	11	8.8e-07	5.2e-05	23.6	4.7	1	23	440	462	440	462	0.99
8	11	6.9e-05	0.0041	17.6	2.3	1	23	468	490	468	490	0.98
9	11	1.4e-06	8.1e-05	23.0	1.3	1	23	496	518	496	518	0.98
10	11	9.7e-05	0.0058	17.1	0.2	1	23	522	544	522	544	0.98
11	11	0.0004	0.024	15.2	0.3	1	23	553	576	553	576	0.95

Sequence Information

Coding Sequence: ATGTCAGCAGCAACGAAACGGCTGGTGAAAATAATGGCCCGACAGGGTAATGGTGACATCGATGACGGCGATCAGACATCATCCGATCAACATGAATACATTACGACAGTCGATGAATCCACCGACGATGATGGATCAATTGCGTATATTACggaaaattatgaaatgacCGATAATaccaatgatgatgatgacgcaTTTTTCGTGGAATATGTGacggaagaagaagaaaatcccATCACCggagaaaataatgaaaccgAATTCGAAGCAAATCAATATGCAGAGTACGCCGAAGATGATGAAATGACCGACGAATTGTACAATTGCAATTTGTGcggaatgaatttcaaatcgatcACCGAACACGTTGAGAAATACCATTCAGGGCAGGATGTTTTGATCGATATTTCGGAGGAGAGTGGATCGGCGATCAAAGCCGAACAAGATGATGATCCACTCGATATTCAGGAGAATGAAGATGAAGGCGGCAGCTTGATTACCGGTTCCGATAATGACGGTGAATTTGTCGTTTTCGGCGACGAATCGATCGATAATGATACTGAACTCTTGGAAGAACTCAGCGAAGAGGATGATCAGGAAGTGTACACATATGACGGTACAACGGGATCACTTACCAGAGCAATTAATATGAAAGGCGGAAAACGACTCAAAGTCACtgcgaataaaacaaatAAGGAAACGTACAGCTGTCAACGTTGCGATGCAGTATTTGGATCGCTGAAAGCACTGTGCAGTCACAAGCTGTCAATGCATGAAAAGGAGATTACGGGAACGAATAAGCCCACACGAAGACTAGTTAAGGCAGCAATTAGAGTGAAGGATAACGACACAGCTAAAGGATCTGATCATGTCTGTGAAACGTGTAACACCACATTTTATTCGGCAAAAAGTCTAAAATTACACGCTCGAATGCATTTGCCAgtgaaatcaaaaacaatcGACGAGGCCACCGAACAAGAAACGGACAATTCAACTGGTGGCGACCAGGATCACAGGAGAGAGAAATTCTATTGTGCCATTTGTGGCAAATCTTACGACAAAAATTTCGAACAAGTTCACGTGCAAATGCACAACGGCGAAGAGAAATTCAACTGCAGCATTTGCAACAAAGTGTTTCCGAACGAGGAGAGCATCCAAATGCACATGAATGCCCATCAAGATACTCGTGTTATCAGAACCAAAGCCGAAATGAGCAATATCAAATTGCCGTATGGATGCCAGTATTGTGGGAAGGAATTTGCTCGACCACacgaaaaagtgaaacatgaacgAGTTCATACCGGTGAAAAGCCGTACGAGTGTGAATTATGCGGAAAATGTTTCAGAGTCTCATATTGTCTGACCATTCACATGCGAACACATACAGATGCTCGACCATATGTATGTCCGCAATGCAACAAGAGATTCAAAGCGCAGTCAGTGTACAATCACCATTTGTTAACGCATTCAGATGAACGCAACTACAAGTGTCCGTATTGCccgaaaacattcaaaaccTCGGTACAATTGTCTGGGCACAAGAACAGCCACACGAAACCATTTACCTGTACAGAATGCAATCGTCCATTCGGATCGCTCTATGCCGTTCGAGCCCATATGGAGAGTCATAAGCGACCAAACCATAATTTGAAACACATTTGTGATATTTGCGGAGCAAAATACGCACGCCGTTTTGCACTCAACGATCACATTAAGGAGCAGCACAAAGATGTTCAACTGGTTATTGTTGACTCAAATAGTGGCAAAAAGTCGCAGgcgaagcgaacaaaaaaggtgaaacaaatcgaaatactggaagatgatgatgaacgaGAATTAGAAGCAGCAGGTCAATCAATTTTACCGAATATGGTCGAACAAGAGATAACAATCAGCGAAATTGAGCATTTCGACAACGAGGAAGAAGTGGTTGAAATGGACGATTGGCTAAAATAA
Protein Sequence: MSAATKRLVKIMARQGNGDIDDGDQTSSDQHEYITTVDESTDDDGSIAYITENYEMTDNTNDDDDAFFVEYVTEEEENPITGENNETEFEANQYAEYAEDDEMTDELYNCNLCGMNFKSITEHVEKYHSGQDVLIDISEESGSAIKAEQDDDPLDIQENEDEGGSLITGSDNDGEFVVFGDESIDNDTELLEELSEEDDQEVYTYDGTTGSLTRAINMKGGKRLKVTANKTNKETYSCQRCDAVFGSLKALCSHKLSMHEKEITGTNKPTRRLVKAAIRVKDNDTAKGSDHVCETCNTTFYSAKSLKLHARMHLPVKSKTIDEATEQETDNSTGGDQDHRREKFYCAICGKSYDKNFEQVHVQMHNGEEKFNCSICNKVFPNEESIQMHMNAHQDTRVIRTKAEMSNIKLPYGCQYCGKEFARPHEKVKHERVHTGEKPYECELCGKCFRVSYCLTIHMRTHTDARPYVCPQCNKRFKAQSVYNHHLLTHSDERNYKCPYCPKTFKTSVQLSGHKNSHTKPFTCTECNRPFGSLYAVRAHMESHKRPNHNLKHICDICGAKYARRFALNDHIKEQHKDVQLVIVDSNSGKKSQAKRTKKVKQIEILEDDDERELEAAGQSILPNMVEQEITISEIEHFDNEEEVVEMDDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -