Smos001253.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitodiplosis mosellana
Gene Symbol
salm
Assembly
GCA_009176505.1
Location
VUAH01000005.1:3648892-3664864[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 6.3e-06 0.00038 20.9 0.9 1 23 392 414 392 414 0.98
2 9 1.7e-05 0.001 19.5 1.9 1 23 420 442 420 442 0.98
3 9 0.44 26 5.6 4.2 2 23 756 777 756 777 0.97
4 9 1.7e-07 1e-05 25.8 1.4 1 23 783 805 783 805 0.98
5 9 0.00031 0.019 15.5 3.2 1 23 815 837 815 837 0.98
6 9 0.003 0.18 12.5 2.5 2 23 1085 1106 1084 1106 0.97
7 9 5.5e-08 3.3e-06 27.3 1.5 1 23 1112 1134 1112 1134 0.99
8 9 3.7e-05 0.0022 18.5 6.4 1 23 1342 1364 1342 1364 0.96
9 9 7.6e-07 4.5e-05 23.8 0.2 1 23 1370 1392 1370 1392 0.97

Sequence Information

Coding Sequence
atgatccAATTTGAAACGGTCAAATatggaatattgaaaaaaaccacggataatcaaaaaatgtcaaaagGTGACAGCACCAGTTCCTGTTCTGAGGAAGATGTTCTACTGCCTgaaacaaatacattgacTGATGAGCCGTGTGTAAATATGTCAAAAACAGAGCTTATTGAAAGTGAAACGACATGCCATGCGGCGGTCCATgctgataaaatgaaattagatAAAGAGTGTCCATCAGACAGTGAAATGGACGACACACATCACAGTTCCGATGAAACCATCGAGAACACAACGAATGGTTTGACATCGTgtaacgatgacgatgatgttACGAAAATCTCCAAACACAATGAAGATGCTGCAAACAATAATAGTAATGAACAACATGATACGGCCACCGAAGATGATGAGGCCAACGATAAATTGGACAACAAAACCGAGCAATCGCTTGATAATGGTTTCGGTGCGACCGGTGCTGGTAGTTACTTCTCCATGGAAGCCATTCAGAAGATGGCACAATTAGTATCGGCTGCAATGACCAACAACAGTGATAACGAAGATGCACAAAAGCAATTGACGCTGTTGCAATCGACACTGTTCACGCTGCAGCATCAGCAATTgtttcaaatgcaattgattCAACAGCTACAATCGCAGCTATCGTTAACACAATCGGGCAAAACCGATGtggacgatgacgatgacgaaaTGGACCAGATGGAGCACGGTGACGATGAACGCGAAGAAGGTGAACTGTCCGAAGAGCAAATGGCCGAGGAACAGCGTAAATATGAAGAAGAACAgaaagcaattgaaattgaaaaggaaaaattacgcttgaaacaacagcaaaaattagaaaaagaaaaaaccaatgaCAAGTCGTCGAGTAAAGAATACGATGCATCGAAGCCACTCGATCCAAATGACAGTAAATCAAATGATGCGCTTGCCGCAATGGAAGCATCATTTAGCTCACAATTCTCATCAAATATCATCACAAATCACGATGAACCATCGTCACTCGACGGTCTAAATTCGTTGGAAATGCTTCAAAAGCGTACGGAAGAAGTGTTGGATTCAGCGTCAAAGGGTATTCTATCCGGCGGTTTAACCGACGAAATGGCATTTAAGAACGATGGCAAAGGACGAAACGAACCATTTTTCAAGCATCGATGCCGATACTGTGGCAAAGTGTTTGGTTCCGATTCAGCATTACAAATTCACATTCGATCTCATACGGGCGAACGGCCGTTCCGATGTAATGTGTGCGGCAGCCGATTCACAACCAAAGGCAATCTAAAGGTACATTTCCAAcggcacacacaaaaatttccACACATTCCCATGAATCCAAATCCGATACCGGAACATTTAGACAAATTCTATCCACCGTTGTTGCCCCCAATCCCACCGGGTCAACAAGCACCGTTATCACCGCCAGCAGCAtcagcggcggcggcggcggcagcaaACTCAGCCAGTTCTGTTCCAATATCTCCATTGAATTTACCGAATTTACCATTTCCTCCGATACCTGGTTTACCGAGCAATTTACAAGGTTTGCAATCGCTACAAGGCTTACATAGTTTGCCATTTTTACGACCTCCATTCGATTTACTCAAACAAATGGGCGCCCATCCATTTTTCGGTGCAATGCGCGACGCTgtacaacagcaacagcaaaaagagCGTGAACAACTGGAACAAGACGCACCGGCCGATTTGAGTAAAGCAACCGATTTATCGAAATCCCAAATCAAAGAAGAGCCCAAAGATGATGAacgcgatgatgatgatggtgaacGTTCACCAGTCGATGAAGTGTGTGAAAAGTCAAAACGAAGTCGAGACTCAAATTCACCGCCAGTCGACCGAAAACGAAGTGAACCGATTGAAAAGCGTCGTAGCTTATCACCTCTGCCACCGCATCGTCGGTCGTCTTGGAAAGATGATAACAAAAGCGACGGAATGTCACCGACACCAAGTATGGACAACTATTCACCAAAGGCCGATCAACCCGAAAATCTGTCGTCTCGCATCTCATCGAAACACCATTCGCCAAGCAGTATCGGATCGGCCGCCCGCGATAATCATTTCCATGAGAATCAAAgcgatttgaaaatgtttccaacACTTTTGCCTCGGCCGGGCAGCAACGACAACTCATGGGAGAGTTTCATTGAAGTGGATCGGTCGTCGGAAACATCAAAATTGCAACAATTTGTTGATAACATTGAAAGTAAAATCACCGAACCAAATGAGTGTGGCGTTTGCCACAAAGTGCTGTCGTGTCACAGTGCGCTCATCATGCATTATCGCACACATACGGGCATAAGACCgttcaaatgtttgatttgtgGCCGCAAATTCACGACAAAAGGCAATTTAAAAACACATATGAGTGTGCATCGCATGAAACCACCAACACGTACCATTCATCAATGCCCCGTTTgccacaaaaaatattcaaattcattggtGCTACAGCAACATATCCGTTTGCATACAGGCGAACCAACCGATCTGACGCTCGAACAAATTAGCGCCGCGGAAATCACTCAAATTTCACCATCATCTGGTACGGCCGCTTTTCCCATGGGCTTGAACCCGTTCGCATTCCCAATTCCAGGACTGCATCCGGGCATGAGCGCCGAATCATCGAACGGAGACAACGATGAAATGATGGACGAGGACTTCGATGAGGAAAGCAACTATGAAGAAGTATCAAATACTGGTTCGATTTCAGgtgattcaaatcaaaacatatCACGACTTAATAGTAGCGAAGAATTACGTGAATTACGTGAGCTGCGCGAGTTACGCGAATTGCGCGAGTCACGTGCTCTGCATCGTGCCGATCACAATAAATCGATTGAGAATCTATCACGTGCACCATCGGCCACCAGCCATGCCGATAGTGTTGACGAAAAACGTAGCTCAAGTCCACGCACACCACAACCATTGTCACCCTCTCCATCCGATATGTCACAAGGTGCACTCGATTTAACACCACGTTCCGAACCAAAATCAACTAATGGCCAACATCCATTGCCAACATCGGCGGCTGCggccgctgctgctgccgtgGCTGGCCTAAATGCGTTCCCCAGCTTCCCATTCATGCATCACAACGCTATCAATACCACCACACCGATGATGAGCGGTGCACTCAACTCACTCGCACAATCCGTTGCACCGATGGGACCATTCAATCCGATGGCTTTGGCAGGTGTTCGCGGTAATACCACATGCAAAATTTGCTTCAAAACATTCGCCTGTCAATCAGCGCTGGAAATTCATTATCGCAGCCACACCAAGGAACGTCCCTTCAAATGCTCCATTTGTGATAAGGCATTTACAACAAAGGGAAATATGAAGCAGCATATGATGACCCATAAACTGCGGGATGTGCCACAGCACATGTTTTCAAACAGTAAAGTGGAACAATCGAGAAATATTTCACCGGATAGTGCAAAAAATACACCATCATTGCGTGTTCGAACCGAATCCGAACTGAATCCACGTTCATCGGCCAGCGCAGCCACTGCggctgcagcagcagccgtGGCTGAACAACGTGAACGCTCATTTCAATCGCATGTGGATAGCAACTATCAATTGATGCTGGAACGTCAACATCATTTGGAGCAAATGCAACGACAACATCAATTACAATCACGTCACAGCCCCTTGCATCTTTCACGGCAATCATTGAGCGCCCTGTCTCCACCACAACATATCAAAAGTGAACTCACCTCTCGCCAAAAACCCACTGATGATGCCGATCAACCCGCAGCCAAACGACAATTGCtatCCGATTCGCAAGACATCCCAACCAGCTTGAAAGAAGCCTATCAAATGCCACCAATGCATGAGTCGGAGAAGACGGCATCGCATTTGGAGCGATTGCAACAATTTCACACCTCATCACTACTCAATCAACCAATCAAATTGGATCCATCGTCGCATATAAAATCGTCAGCCACCTCGCCCAGCTCAAATGATGCCGATCAAAAGCACTTTTGTCATTTGTGCCAGAAGAACTTCAGTTCAACATCATCGCTGCAAATTCATATGCGCACTCACACCGGTGAACGGCCATTCGTTTGCTCAGTGTGCCAGAAAGCATTCACCACCAAGGGTAATTTGAAGGTTCATATGGGTATCCACACTTGGAGTGGTGCATCGCGTCGTGGTCGTCGCATGTCATTGGAATTGCCATTCAACGGTTCGATGCCGTTAATGTTGCAAAATCCCGACTTTTTACAGCGTCATTCGGATTTTTTCCATCCATATCCGCCGCACTTGCTCAGTCGCATGTCATTGgagcatcaacagcaacagcaaaagctCGATCGTGAAGCAATGAATTTAGCTAGCAAATATatgaattcaaatggattGTCACGTGGTCATCGTGATGAGCGTCGTGAATACTCGAATCCACCGTCACCGGCCGACAGTGACAAACAGCAAATTTCACCAAATAGTTTACGTGACGAACGTTACACCGATTCACCAAAACATCGCAACGGTGACCGCGATCATTCGCCATCGCCACGCATGTGGAAGTTACACTATGAAAGCAAAGCCGTTAATCGTGATTCTAAATCAAAAGGTGACGATCAAAATAAACCTGTCGAAGAATTGACcgcataa
Protein Sequence
MIQFETVKYGILKKTTDNQKMSKGDSTSSCSEEDVLLPETNTLTDEPCVNMSKTELIESETTCHAAVHADKMKLDKECPSDSEMDDTHHSSDETIENTTNGLTSCNDDDDVTKISKHNEDAANNNSNEQHDTATEDDEANDKLDNKTEQSLDNGFGATGAGSYFSMEAIQKMAQLVSAAMTNNSDNEDAQKQLTLLQSTLFTLQHQQLFQMQLIQQLQSQLSLTQSGKTDVDDDDDEMDQMEHGDDEREEGELSEEQMAEEQRKYEEEQKAIEIEKEKLRLKQQQKLEKEKTNDKSSSKEYDASKPLDPNDSKSNDALAAMEASFSSQFSSNIITNHDEPSSLDGLNSLEMLQKRTEEVLDSASKGILSGGLTDEMAFKNDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFRCNVCGSRFTTKGNLKVHFQRHTQKFPHIPMNPNPIPEHLDKFYPPLLPPIPPGQQAPLSPPAASAAAAAAANSASSVPISPLNLPNLPFPPIPGLPSNLQGLQSLQGLHSLPFLRPPFDLLKQMGAHPFFGAMRDAVQQQQQKEREQLEQDAPADLSKATDLSKSQIKEEPKDDERDDDDGERSPVDEVCEKSKRSRDSNSPPVDRKRSEPIEKRRSLSPLPPHRRSSWKDDNKSDGMSPTPSMDNYSPKADQPENLSSRISSKHHSPSSIGSAARDNHFHENQSDLKMFPTLLPRPGSNDNSWESFIEVDRSSETSKLQQFVDNIESKITEPNECGVCHKVLSCHSALIMHYRTHTGIRPFKCLICGRKFTTKGNLKTHMSVHRMKPPTRTIHQCPVCHKKYSNSLVLQQHIRLHTGEPTDLTLEQISAAEITQISPSSGTAAFPMGLNPFAFPIPGLHPGMSAESSNGDNDEMMDEDFDEESNYEEVSNTGSISGDSNQNISRLNSSEELRELRELRELRELRESRALHRADHNKSIENLSRAPSATSHADSVDEKRSSSPRTPQPLSPSPSDMSQGALDLTPRSEPKSTNGQHPLPTSAAAAAAAAVAGLNAFPSFPFMHHNAINTTTPMMSGALNSLAQSVAPMGPFNPMALAGVRGNTTCKICFKTFACQSALEIHYRSHTKERPFKCSICDKAFTTKGNMKQHMMTHKLRDVPQHMFSNSKVEQSRNISPDSAKNTPSLRVRTESELNPRSSASAATAAAAAAVAEQRERSFQSHVDSNYQLMLERQHHLEQMQRQHQLQSRHSPLHLSRQSLSALSPPQHIKSELTSRQKPTDDADQPAAKRQLLSDSQDIPTSLKEAYQMPPMHESEKTASHLERLQQFHTSSLLNQPIKLDPSSHIKSSATSPSSNDADQKHFCHLCQKNFSSTSSLQIHMRTHTGERPFVCSVCQKAFTTKGNLKVHMGIHTWSGASRRGRRMSLELPFNGSMPLMLQNPDFLQRHSDFFHPYPPHLLSRMSLEHQQQQQKLDREAMNLASKYMNSNGLSRGHRDERREYSNPPSPADSDKQQISPNSLRDERYTDSPKHRNGDRDHSPSPRMWKLHYESKAVNRDSKSKGDDQNKPVEELTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01288433;
90% Identity
-
80% Identity
-