Smos016917.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000003.1:2267496-2270247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.96 58 4.6 0.3 1 23 8 30 8 30 0.87 2 19 0.00024 0.014 15.9 3.2 1 23 188 211 188 211 0.94 3 19 2.5 1.5e+02 3.2 2.2 1 20 216 235 216 237 0.93 4 19 0.031 1.8 9.3 0.6 1 23 258 281 258 281 0.97 5 19 4.3e-05 0.0026 18.2 2.1 1 23 287 310 287 310 0.98 6 19 9.7e-06 0.00058 20.3 2.8 1 23 319 341 319 341 0.98 7 19 0.081 4.8 7.9 0.4 1 23 347 371 347 371 0.97 8 19 0.00057 0.034 14.7 0.0 2 23 504 526 503 526 0.92 9 19 0.86 51 4.7 2.1 1 19 532 550 532 551 0.90 10 19 0.0034 0.2 12.3 4.8 1 23 563 585 563 585 0.97 11 19 0.00033 0.02 15.5 0.2 1 23 591 613 591 613 0.98 12 19 0.0086 0.51 11.0 0.0 1 23 619 642 619 642 0.94 13 19 0.32 19 6.1 1.1 2 21 647 666 646 667 0.92 14 19 0.51 30 5.4 1.8 1 23 688 711 688 711 0.95 15 19 0.016 0.95 10.2 5.2 1 23 718 740 718 741 0.96 16 19 0.61 37 5.2 0.2 2 23 750 770 749 770 0.81 17 19 4.3e-05 0.0026 18.3 3.4 1 23 776 800 776 800 0.99 18 19 0.0014 0.084 13.5 1.2 1 23 806 831 806 831 0.95 19 19 0.00013 0.0077 16.8 0.1 2 23 839 860 838 860 0.97
Sequence Information
- Coding Sequence
- ATGACCACAACGAGAGCGGTTCatcaatgtttgttttgtccTCAAACATTCGGAAGTGCCGCTGAAAAAGATGACCACGTTCTAGAGCATTTCACTCAAGAGACTTGCGCCGACTGCGATCAAAACTTAATTCGAATCGGTTCCAATTTGTATACTGTACACAATGCGGTTACATGTATCAagggaaaaatcaaatccgAGGAGCACATTGAATCGTGTTTTGTTGACACTGTTATTTCGGAGACAGTCGCCGAATATGAGACACGAATCAAAACCGAACCCATCAGCACAGCGTTCAATGAACGTGTATCATTGAACAGATTACTACCGATGGAAATGCCTCCACTCGCACCTATTAGAGAAATGCCACCTCTAGTTCCCATTGGAGCTGTTCACTATCCTGAAAATCCTCACTCGATCCACCTAGAAGAAATAACCATCAAAGAAGAACCAGCTATGCATCACGAGCAAAAAGATCCTTCAACGCATACAGTCGATGCAATCGATAAGCAACCACTACCGAGTACAGAACCCCGAACAAGTAGAAAGAGAGGAGGACGTCACATATGTAATATTTGCGGAAAAACATGTGCTCGAAAAGATTCATTACAAGGTCACAAAATACGAAAGCATAGTACAAACActtatttttgtaaaatttgttGTCATATATTTGACACCGAAAACCAATTGATACAGCATAAAACTGTGTGtgaatcaaaaaagaaacagcgACATGAATTTAGGAAATTAAAAGATAAGAATGCATCGTATGAATGTTACTTATGCAGAAAAGAGTCTCCAAATCATGCAGCTCTAAGTGCTCACACTCGATTGTCGCATACTAATCGTCATAAATTCAAGTGCGAAACATGTGGAATGCACTTTGTCACAAAGCCAATGCTGCAAGTTCATCAACAACGACGTCATattgaaagtttgaaaaatcgaagaTTCGTGTGTAGTATTTGCGGAAAATCGTTGAACAGAATGCATAGCCTAAAGAAGCACATGAGTCGACATAACGAAGAAAACCTATTCAAATGTTTAATTGAAGGATGTGACGAATGTTTTGTGCTTGCTCGCGACAGAGATGAACACATGCAAACTCATACAAGTCAATATGGTGAACAggcaaatgaacaaaaacagcaGAGTGATTGGAGCTCCGTATTCTTGGGCGTTCGTCCCGTCGCTATTGAAACCATTtgggaaaatgaaatacaaatcaaaacaGAGCCCACATTTGAATGTCCAGATGATCCAGAAGTACAATATGATTACCAAAGTAAAGAAATAGCATCGGCAAGCAGTTCGAAGACGAGAACCGATGATATATCTATGGAAAGGATCGATTTGAGGGAGGTCACCAGTGTTCAATCAAgtcaacattttccaaatgaatccAACTCCAAACGAGAGGAAACAATGGTAAAGAACATACGGACACCATCAACATCGATTGGCAAACAGTCGTCTCAGAGCGATAAAGGCAAGCGTAAACCCGTCGAATGTGATATTTGTGGTAAAATATTGAGCGTACAAAGTTCACTGGCACGGCATAAAATACTCTTGCACAGTGACGCAACCACTTATTTTTGTAGATGTTGCACAAAGATATTTGCAACCGCAGACGAACTAGCCCATCATAAGCCGGAATGCCGTCGAAGAGTAAATGGCGGCGCATTTGATTGCAACATCTGCAAAAAGACTATACACTCACGTAATTCCTTTCGCAAGCACATGCAATCGCATAATCCCAACAACAAGTTCAAGTGCGAATTATGTGGTGTACATTTTGCACAGGAGGCAACGCTTGCAAATCATTATGCGGTTCATGACAGAGGAGCACAGTTTCCATGTGATATTTGTGGAAAAATAGTATCTCGAGCCGATATACTAAGACTTCATAAAATTCGAATGCATTCGGGGACACTGTACTGCACGGTTTGCTGTCGCATATTCAgcaccaaaaaagaaatgacagAACATAGGTTAATATGTGAATCGAAGAGGAAAATGCAATGggaaacgagaaaaaacagAGATGAAAATGCATCTTATGAATGTTACCTATGCCACAAGCTGTATTTAAATCAAGCTGCTCTGCGTGGTCATCTACGTTTCAAACACAGTGCAGAAGCAATTCGATTTAAGTGCAACATTTGCAGGAAGggatttttcacaaaatttgtACTGGATAGTCACACAAAGCGTCATCATCAACAGTTGAACGATCGAAAGGTTATGTGCACGGTTTGTGGTAAATATTTGGCAACAAATTCACTTCAGAGTCACATGTACATCCACACCAAACAAAAGCCATTCAAATGTCCTCATCAAGGCTGCCGAAAATCGTTTCGATCTAAAAGCAGTATAAGTGAACATATGAGAAGTCACACTGGTGAGAAGCCGTTCAAATGCACTGTCGATGGATGTGATCAACGATTTTCTTATGCTGTGGATTTTAGACgacataaattcaaaattcatggcatttttgcaaaaaaaatcccgTGCACGATTTGTGATGCAATTTTTCCAGAGAATACCCTATTGAAGGCACACATGAAGAAACACAATGTGTAA
- Protein Sequence
- MTTTRAVHQCLFCPQTFGSAAEKDDHVLEHFTQETCADCDQNLIRIGSNLYTVHNAVTCIKGKIKSEEHIESCFVDTVISETVAEYETRIKTEPISTAFNERVSLNRLLPMEMPPLAPIREMPPLVPIGAVHYPENPHSIHLEEITIKEEPAMHHEQKDPSTHTVDAIDKQPLPSTEPRTSRKRGGRHICNICGKTCARKDSLQGHKIRKHSTNTYFCKICCHIFDTENQLIQHKTVCESKKKQRHEFRKLKDKNASYECYLCRKESPNHAALSAHTRLSHTNRHKFKCETCGMHFVTKPMLQVHQQRRHIESLKNRRFVCSICGKSLNRMHSLKKHMSRHNEENLFKCLIEGCDECFVLARDRDEHMQTHTSQYGEQANEQKQQSDWSSVFLGVRPVAIETIWENEIQIKTEPTFECPDDPEVQYDYQSKEIASASSSKTRTDDISMERIDLREVTSVQSSQHFPNESNSKREETMVKNIRTPSTSIGKQSSQSDKGKRKPVECDICGKILSVQSSLARHKILLHSDATTYFCRCCTKIFATADELAHHKPECRRRVNGGAFDCNICKKTIHSRNSFRKHMQSHNPNNKFKCELCGVHFAQEATLANHYAVHDRGAQFPCDICGKIVSRADILRLHKIRMHSGTLYCTVCCRIFSTKKEMTEHRLICESKRKMQWETRKNRDENASYECYLCHKLYLNQAALRGHLRFKHSAEAIRFKCNICRKGFFTKFVLDSHTKRHHQQLNDRKVMCTVCGKYLATNSLQSHMYIHTKQKPFKCPHQGCRKSFRSKSSISEHMRSHTGEKPFKCTVDGCDQRFSYAVDFRRHKFKIHGIFAKKIPCTICDAIFPENTLLKAHMKKHNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -