Smos004681.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000017.1:1657277-1659948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7 1e+02 3.8 2.3 2 23 17 38 16 38 0.94 2 17 0.15 9 7.1 1.1 1 23 140 162 140 162 0.97 3 17 0.073 4.4 8.1 1.3 2 23 169 191 168 191 0.87 4 17 0.12 7.4 7.4 2.5 1 23 249 271 249 271 0.98 5 17 0.024 1.5 9.6 0.1 3 23 279 300 278 300 0.97 6 17 0.0014 0.082 13.5 1.2 2 23 355 377 354 377 0.96 7 17 0.00057 0.034 14.7 2.3 1 23 426 448 426 448 0.98 8 17 1.6e-05 0.00098 19.6 0.1 1 23 453 476 453 476 0.94 9 17 0.047 2.8 8.7 3.1 1 23 506 528 506 528 0.99 10 17 0.00018 0.011 16.3 0.8 1 23 533 555 533 555 0.95 11 17 5.4e-05 0.0032 17.9 2.6 1 23 563 586 563 586 0.98 12 17 2.1e-05 0.0012 19.3 1.9 2 23 605 626 604 626 0.97 13 17 6.1e-06 0.00036 20.9 0.8 2 23 634 655 633 655 0.96 14 17 0.0064 0.38 11.4 1.7 2 23 661 681 660 681 0.96 15 17 1.5e-05 0.00088 19.7 1.1 1 23 686 708 686 708 0.98 16 17 4e-06 0.00024 21.5 1.5 1 23 714 736 714 736 0.99 17 17 0.0016 0.097 13.3 3.5 1 23 742 764 742 764 0.97
Sequence Information
- Coding Sequence
- atgaaaattggtgaaatatttcaattaatggACAGTAGCATTTCGCTGTGTTGCCTGAATTGCTCGCAAGagtttcaatatttcactGAATTCACATTGCATATTCAGGAGCATTTTATGCGTGGAGAAATcgcaaaattaaaagaagTCAAAGAAGAAGTTCCAAGTGAAAGCCAAAATGAAGCAGTGGTCGATGATTCGGTGCCGCAAAACGAAGGGATAATAGTTAAATGTGAGGTTATTCGAAATGATgcggatgatgatgattttttcaacGATGATTCTGAGATGAGATGGTCGGACGATGACGTGAATAGTGTGTTGATGGATCAACGGGATGCGGGACTACCGACCGAAAATCTcccaaaaaatgtattaatcGTCGAAGGAACTGattacgaaaaattaaatgacaaATTCAAGTGTTTGACCTGTGATCATGAAGCAACAAAATGGAATCAATTCGAGGAGCACGTATTGAatcattcaaatccaaaagATGTGATGTGCCCAATTTGCTCTAAGATTTTTGCATCATATGCGTACACGCAAAAACATTGCAACCGAACGCACAGTCAGAAAATCTCCTTGGAAAAAATAAAGGAAGCTCAAGCGATGCGATATAAGAAAGAAGCAAGTGTGGTTGTTCCAACAGCTCCCCCACCACCGCCAAAGCAGAAGATAAATCCAAAGCCAGAGAAAAGGATGTTCGATGGAACGGACTACAAAAAAGTAGATGATAAGTTTCAATGCTTGACATGTAATCGAAAGATGGCCAAATTGGATCATATGAAAGAGCATCTTTTGACACATActagcgaaaaaaatgtgttgtgtCCATTCTGCGCGCGTGCATTCATCACGGAGGCATACGTTCGCAAACATGTCAATAGAAGTCACAACAATATACGAATTACAGCCGAAGAGATTAGAGCGGCTCAGTCTACGATCGATGTATCgctgaagaagaaagaatggGAAATGCAGCAGAAACGTACACAAATGATCAAGGCAGCGACCAGTTCAATGACGGCAACGGCAGCAGCTGAAGAGGGAACAGTTCGGTGTTTATTCTGTGAGAAACGTTTCACAAAAGCTCGTTATGCCCAGAAACATATGCGATTGATCCATGGTAAGCCGATAGCAATCGGTGATGTTGTGAGCTGTCAACCCATTATCAATGGAAGTGATGGAACCAAATTTTCAGCTGAAAAAGATGACGGAGGTGGAATCAGTAAAGAAGTTGCATGCGTCGGAGAAGAGCCggagaaaaaatttgaatgctTCGAATGTCACAAGCAATTTGTGAGCTTGAATTCAGTTCGAATTCACATGAAATTGCACAGTGGAATAAAGTACATTTGTCCGTATTGCGGCAAAGTATTCGCCATGAAGTCATACGTGAGAGATCACATTGTGATAATGCACGGAATGAGGCGGGAGGACATACCGAAGGAAAGTGTTCGGCAAGTTTCGgaagattttatttacacGCCACGGCCCAATGTTGCCCTGTATGAGTGTTATTTGTGCCGGAACCAGTATCGAAAACGAAACCGATTACGAGAACACATGAACACACATATGAATGGACCATTCTTGTGTGTGATCTGTGGAGCGGTTTACAAATCAACGGACACGCTTAGGCATCACATGGAAAGACACAAAGCCAATCCCGATGAGCCTCATCAGTGTACTGACTGTGGAAAAATGTATCCGACACGTCGGTACATGTTGTCCCACTATCGCACAATTCATCTGAACAAGCGACGAAAGAAATCGACGGTTCCCGTCGAGAGGAAGTACGACATTACTTGTGAAATATGCGAAAAGAAATTTATGAGTCAGCATAATCTCAATCAACACCAATCTGTACACAATCGGGACCCAAAGGAACTGATTTGTCATGTCTGCGGATGGGAGTTTAAGGAGCGTTCAAATCTGAAGCAACACCTCGAATCTCATGGCAATAATAAAACGACTTGTGAAATATGCAATAAGGTACTCTCGCATCGATACTTACAAGAACACATGAAAATTCATGGCAACAAAGAGTTCCAGTGTTCAAATTGTGGGATGCAGTTTGTTTCTCAAGAAAGACTGAAACGTCATATGGTTCGGCATTCGGGTGAGCCCAAATACAAATGCGATTTATGCCCAAAGGCCTACACCAGATCCGATAAGCTACTGTATCACCGACGCACTCACGATCAGCAAATGACACACGAATGCCGAACGTGCGGCAAGGGATTCTTCTCAATCAAATCACTGCgaaaacacgaaaacaaacattatttAGAAGACAATGGCCTTTTGAAGTCGAACAATTTGAACATATAA
- Protein Sequence
- MKIGEIFQLMDSSISLCCLNCSQEFQYFTEFTLHIQEHFMRGEIAKLKEVKEEVPSESQNEAVVDDSVPQNEGIIVKCEVIRNDADDDDFFNDDSEMRWSDDDVNSVLMDQRDAGLPTENLPKNVLIVEGTDYEKLNDKFKCLTCDHEATKWNQFEEHVLNHSNPKDVMCPICSKIFASYAYTQKHCNRTHSQKISLEKIKEAQAMRYKKEASVVVPTAPPPPPKQKINPKPEKRMFDGTDYKKVDDKFQCLTCNRKMAKLDHMKEHLLTHTSEKNVLCPFCARAFITEAYVRKHVNRSHNNIRITAEEIRAAQSTIDVSLKKKEWEMQQKRTQMIKAATSSMTATAAAEEGTVRCLFCEKRFTKARYAQKHMRLIHGKPIAIGDVVSCQPIINGSDGTKFSAEKDDGGGISKEVACVGEEPEKKFECFECHKQFVSLNSVRIHMKLHSGIKYICPYCGKVFAMKSYVRDHIVIMHGMRREDIPKESVRQVSEDFIYTPRPNVALYECYLCRNQYRKRNRLREHMNTHMNGPFLCVICGAVYKSTDTLRHHMERHKANPDEPHQCTDCGKMYPTRRYMLSHYRTIHLNKRRKKSTVPVERKYDITCEICEKKFMSQHNLNQHQSVHNRDPKELICHVCGWEFKERSNLKQHLESHGNNKTTCEICNKVLSHRYLQEHMKIHGNKEFQCSNCGMQFVSQERLKRHMVRHSGEPKYKCDLCPKAYTRSDKLLYHRRTHDQQMTHECRTCGKGFFSIKSLRKHENKHYLEDNGLLKSNNLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -