Smos013288.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitodiplosis mosellana
Gene Symbol
-
Assembly
GCA_009176505.1
Location
VUAH01006225.1:4451711-4454602[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.8e-05 0.001 19.5 0.7 2 23 61 83 60 83 0.97
2 14 0.00011 0.0064 17.0 3.7 1 23 110 132 110 132 0.99
3 14 7.7e-05 0.0046 17.5 5.7 1 23 164 186 164 186 0.98
4 14 5.3e-05 0.0031 18.0 1.8 1 23 193 215 193 215 0.97
5 14 0.0057 0.34 11.6 0.6 3 23 223 243 221 243 0.97
6 14 4.9e-07 2.9e-05 24.4 0.8 1 23 249 271 249 271 0.99
7 14 8.3e-06 0.0005 20.5 1.6 1 23 277 299 277 299 0.98
8 14 0.00029 0.017 15.7 6.1 1 23 305 328 305 328 0.96
9 14 0.00028 0.017 15.7 7.6 1 23 656 678 656 678 0.99
10 14 0.0034 0.2 12.3 0.9 1 23 684 707 684 707 0.96
11 14 0.00057 0.034 14.7 7.9 1 23 713 737 713 737 0.98
12 14 0.00061 0.037 14.6 0.1 1 23 743 765 743 765 0.98
13 14 0.01 0.61 10.8 4.7 1 23 771 793 771 793 0.98
14 14 0.00037 0.022 15.3 4.6 1 23 799 822 799 822 0.97

Sequence Information

Coding Sequence
ATGGATTTGTTGACGCCAAAACTTGAAGTGTTTACCAATCACGATACGGTAATTGACGATACAAATAACGACAACAACGGTTCGTGTACGAGTGTACGGCCACGACGAATACCAGCCACAAAACCGATAGTGAAAGAAGAAACCAAAACTCCGGTGAAAAAGTACAAAAAGAAGCGTCAACAATGCCCACAATGTCCGATGACCTATTCGAAGCGAGAGTATTTATCGAAGCATATGAACACTGAACACGATATGACACTGGAGAAAAAGCGACCCGGCCGACAATCTCAATTCCATTTTCCGCACGGTGACGACGATCCACGTCCATACAAATGTGATCAATGTGTCAAAGAGTATATAAAATCAAAGCACTTGGCCCGGCACAGGCGCACACATTTTGAAAGCAAACATTGCACTGTGTGCAATGAAATCTGTAGCAATTTTGCCGATCATATGCTGAAAAAACATGGCATCGATCTGCCACGACCATTCGAATGTGATATATGCCATAAACGGTATAGAACAAAAACGCACATATCAACCCATATGCGAATTCATAAAGCAGCTAGCCGCCTGTTTGCCTGTACCGTTTGtacgaaaacatttttctttgccaCCGATCTACGGAAACACGTGAAAACCCATTCAAAAAACCGTTCGGTAATTTGTGATATTTGCGGAGACGCTTTCAAATCAGCCGACACACTGAAATGCCATTTGCGGCGACACACTGGTGAACGACCATATAAATGTTCACAATGTCCGCGCGCCTTCAGCACTAGCAACAGTTTGGACATTCACATGCGAACGCACACTGGAGAAAGGCCGTTCCAATGTGAATTCTGTGAAAAACGATTCAGTGACTCGTCAACGCTGCTCGTGCATAAGCGGCTgcatacaaatgaaaatcccTATATGTGTCATCTTTGTGGCCGTCGCACGAAACAAGCCTCAAATCTACGTTCCCACTACAAGCATTTCCATAAAAACAATGACATATCGGGTCGACAGATTCGCATGAACTCACGAATATTCAGTCGATTCGCACAAGGTGAAATCGATACCGAATTGCAACAAACGGGTGATTTGATGGCGCTATTGGAGCGCGGCATGCAGGACTTTGATCGTGAggaaaaggagaaaaatagtcaaatcgaaaaagcattgaaaacGATAACCACACCACAAGTGAAACCACCGATGgcgataagaaCTGAAATGAATACCGTGAAATATGACGAGGTCAACCCAGCGGATCATGTCGAAGTAAAAGTAAAtgtgaaagaagaagaaacagttGAACCAAGTTCAGCAGCAGTGAAAAAGATAGGAAACGCAACGAAATCCAAAGCGAAGCAATGTCCAAAACCTAATGCACCAGCCATGATTCGATGGAGTTCGTCGTCGGTAGCGACGCAGTCACACAACGACTATTCCGAAGATATAAAAGACATTCAACCGAGTTTTGACGATAATCTAGCGTATGATCCAGTGCCAATACCAGTGAACAAAGGTCCGctaaaaattgaaagtgtATTTCTTGAAGATTCACCCTATCCACAGCATGAAATTGAGATCGTTTCAATTGACGATGTGAAAAAAGAGGCGATTTCCGATGATGACGATATTTGGGCGAACGAAAATTACGATGATTCGTCAGATGAACCATTCCAGATTATTAAATGTGAATCTCTTATCGATGAAGGTGGCAAGAAGGCAGCCATTACGAAAGCGACCAAGTCATCAAATAAAGCGTCCAGTAAATTGACGACAAATAATGAGATTAAACTTGAAAAGATAGAAAAATACGATGAAGACGAAATGGATGCAATAGAACAGAAGATATCGCCGCGGCCGAAAATGATCGCACCAAAGACAGAACGGGAACGATGCATACCGTGCAATAGAAAGTTTCACGATATGGCCAAGCATTGGGTGCAATTCCATTCGGGCATCGAACGACCGTACGAATGTTTCATCTGTCACAAGGACTATAAACGTTTCGAGCACCTTAAATACCACATGAAAACGCATGGCGATGAACGAAACTACATTTGTCATGTGTGCGGCGATGCATTCTTCTTGAGCAACGATCTGAGAAAGCACATAATGAATCGGCATCAGGTCGAACGGCCGTTTAAATGTACGTTTCAGCAATGTAAAAAATGCTTTAAAAATCAACACGCGCTCAATGTGCATTCGCGAACGCATTCGGGCATAAAACCATTCGTATGTGCCGTGTGTTCAGAAACCTTTGCCGCGTTAAGCTCGTTGAAGATTCACGAACGAAAACATACCGGAGACAAGCCGTACGTGTGCAAATTCTGCAATAAAGCATTCGCTGACTGTTCAACACATCGGCAGCACGTTCGTATCCATACTGGCGAAAAACCATATCGTTGTCATTTGTGTGATCGACGAACGGCCCAAGCGGGTAATCTGAAATCACACTATCGCCACTATCACAAAATCATTGTGAAAAGTGTCAGCATGTTCATGGATCCTAATTCAACCGTTCCATTCGCCAGTCAGGAGATTCAACGAGATCCATACGAACAAAATCATCCATTTGCCCCATACCCACTGATGAATCCATCGAGGCGAATCGAAGAATAA
Protein Sequence
MDLLTPKLEVFTNHDTVIDDTNNDNNGSCTSVRPRRIPATKPIVKEETKTPVKKYKKKRQQCPQCPMTYSKREYLSKHMNTEHDMTLEKKRPGRQSQFHFPHGDDDPRPYKCDQCVKEYIKSKHLARHRRTHFESKHCTVCNEICSNFADHMLKKHGIDLPRPFECDICHKRYRTKTHISTHMRIHKAASRLFACTVCTKTFFFATDLRKHVKTHSKNRSVICDICGDAFKSADTLKCHLRRHTGERPYKCSQCPRAFSTSNSLDIHMRTHTGERPFQCEFCEKRFSDSSTLLVHKRLHTNENPYMCHLCGRRTKQASNLRSHYKHFHKNNDISGRQIRMNSRIFSRFAQGEIDTELQQTGDLMALLERGMQDFDREEKEKNSQIEKALKTITTPQVKPPMAIRTEMNTVKYDEVNPADHVEVKVNVKEEETVEPSSAAVKKIGNATKSKAKQCPKPNAPAMIRWSSSSVATQSHNDYSEDIKDIQPSFDDNLAYDPVPIPVNKGPLKIESVFLEDSPYPQHEIEIVSIDDVKKEAISDDDDIWANENYDDSSDEPFQIIKCESLIDEGGKKAAITKATKSSNKASSKLTTNNEIKLEKIEKYDEDEMDAIEQKISPRPKMIAPKTERERCIPCNRKFHDMAKHWVQFHSGIERPYECFICHKDYKRFEHLKYHMKTHGDERNYICHVCGDAFFLSNDLRKHIMNRHQVERPFKCTFQQCKKCFKNQHALNVHSRTHSGIKPFVCAVCSETFAALSSLKIHERKHTGDKPYVCKFCNKAFADCSTHRQHVRIHTGEKPYRCHLCDRRTAQAGNLKSHYRHYHKIIVKSVSMFMDPNSTVPFASQEIQRDPYEQNHPFAPYPLMNPSRRIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-