Smos007836.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:15226963-15230000[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.22 13 6.6 1.9 1 23 25 47 25 47 0.93 2 18 1.4 82 4.1 2.6 1 23 185 207 185 208 0.94 3 18 0.028 1.7 9.4 2.2 2 21 214 233 213 234 0.91 4 18 0.026 1.6 9.5 0.5 1 23 256 279 256 279 0.96 5 18 9.1e-05 0.0054 17.2 3.6 1 23 285 307 285 307 0.99 6 18 7.7e-05 0.0046 17.4 0.1 1 23 347 370 347 370 0.97 7 18 0.00064 0.038 14.6 2.2 1 23 376 398 376 398 0.98 8 18 0.002 0.12 13.0 3.8 2 23 436 458 435 458 0.93 9 18 9.8e-06 0.00058 20.3 3.5 1 23 464 486 464 486 0.98 10 18 0.016 0.95 10.2 4.5 1 23 525 548 525 548 0.96 11 18 0.00018 0.011 16.3 3.8 2 23 553 574 552 574 0.96 12 18 0.00057 0.034 14.7 1.1 1 23 606 629 606 629 0.97 13 18 0.00017 0.01 16.4 1.3 1 23 729 752 729 752 0.98 14 18 0.00032 0.019 15.5 1.7 1 23 760 783 760 783 0.95 15 18 0.0003 0.018 15.6 0.2 2 23 808 829 807 829 0.97 16 18 1.5e-05 0.0009 19.7 2.1 2 23 835 857 834 857 0.94 17 18 0.0035 0.21 12.2 0.7 1 23 863 888 863 888 0.92 18 18 0.0013 0.076 13.6 3.0 2 23 896 918 895 918 0.90
Sequence Information
- Coding Sequence
- ATGACTTCGATGGATAATTTAATCGCTCCGCAATTTGCGGCCATCAAACAAGATAATGTAATAGGCGATTGGTTCCATTGCCAATTTTGCCCAATGAGTTTTGGCATGTACGACGAGTATAAAGCGCATACCTTTGGCCACTTTAGCACACAAACATGTACCGGTTGTAATGTGCGTCTCATCCAAATCTGTGACAAATGGTTCGAAGTGCATACAGTGGCCAATTGTCAAAACAACCATCATGTCCATACATTCAACACGAACAACGCAGGCCACAATGATAACGGTGAGATTATGGTTATCAAGCAAGAGCCACCAGCCGAAATGGAGGCAGCACAACTCGATGAGCTTCTCAATGTCAAACCCGATGTTGATTTGGATGATTTCGGTGAAATTTTTGCGGCAAACTTAAATACGATtgaaatgagtgaaaataatGGCGGCTTCGACACAActcaacaacatcaaaattcaaacgataTCTCACAGCTCAACTACCAAGTTGTCAGCATTACTGTAAAGgagaaacatgaaaataaacgTACCAAAGGCTTTCAGTGTCGGTTTTGCGATAAAGTCGTATTATCTCGTTTCCGATTGGACTCACACATTCAGAGCCACCATATGGATAATAAAACGAGCTGTAAACATTGTGGCCGAAACTTTACATCATTTCAACGATTGGATAATCACGTGAAGCGATGTAcatcaaacaataaaaaacgaCCTTACTTGCGAAGTCATCCACATCGTCCGACGGAGAATTTTACATGCGATTTATGCGGCAGCGTTCTGAAAAAATTTCGCACACTTTTCGATCATATGAATGAAGTGCATAGTTCGAAGTTCACTTTTAAATGCCGTATATGCCAACGAAAGTATCCCAGCCGCTATTATTTAACCAAGCATTTGAACAGACATAAGCAGGCCTTTGAAAATCGTCTAGCCAACGatgcatcgaatgttggtgaTTTGGACGAGCATTTGATGGAGCGACGAAAATATGCGCGAATCCATCCACATCGACCGGCCgttgattttacatGTGATATCTGTGGAAAGGCAATATCACGGTTTGACATGCTCGAGGAACACATGAGCATAAGTCATTCGGCACGAGACAGTTTTCAATGTAATATATGCCTCCGTACCTATCCCAACCGTTACTTTTTGCAGAAGCACAAAGCACGTCACAAGAATGCTGCTGCAAACGGTATTGAGATGCTGGAAGAGGATTTAGATAAAGGCCTGatggaaagaaacaaatatcaCCGACTTGCGCCGGGCGAGAGACGATCTGATCTGACCTGTGATGAGTGTGGACGGGAATTTAAACATCATTACCTTTTGATGGAGCACAAAACTTCAAAGCATTCCGGCGAAAGTGTTTTCGAATGCAGAAAGTGTGGACGTTTTTATCCAAACAGATATTATTTGACGAAACATATGAAACGACACGAAGAAGCTGAGAAATGTGGCATTCCAGAAGATCAACTGCCCCAAGATTTGGACGTGGGCCTAATGGAGAGAGCGAAATATGTGCGCGCCGATCGAAATGAGCGGAAAACAGTGTTCGATTGCGATGAATGCAGTAGAAGTTTCAATAAATTCTGCCTTTTGACAGAGCACAAACGATCAAGGCATGGATATGGTCTATCTTGTCGTAAGTGCAATCGTTCCTTTGccagtcgaaaaaaatttgccaAACACATGAAACGACATGACCAAGAAATTTCGGCTGAGAACGATAGAAATCCAATTGAACATGAGCCATACGTTCATACTAACGTATATGCATATCAACCGAAGCCCGAATACGTTTGTAATTCTTGTGGCCTGAAGTATAATACACACGAGCTTCTGAAGCTGCACATGGCATCAAATCATTCGAATCATCTAAACACGGCCAATTtggaaatcattgaaatacAACACAATCTGAGTATAAAACCAGAATCGCACGAGAAAGTGGAAGAGGAAATAGAAGAGGGAGTAGAAGAGATAGTGAAAGAGGaggagaaaattgaaaaagaagaagaagaaagaggacgtgaaaaaaatggtgccaggagaagaaaaatggaaaagcaaaatagaaaagaaaaggaaCAACACGACAATTCGGATGAAGACCTCGTCCAAAGGGAATACTTGCGCGCGCATCCACATCGTCCCGCATCGAATTTTACATGTGAAATTTGTCAAAAAGTCCTATCCACCTactattcaatcaaattgcacATGCGTTCAAGACACACACGAAAAGTTCGAGTGAAGCACCCATGTCCAAAATGTAACAAAGAATTCGTGTCGAAGATACGCTTAGAAAAGCACCGAATTTCAAAGCATCCCAATGTTCCAGATGCTCCACTAGATGCGCCAGCAGAAGCTTCCAAGTCGAAAGGTgttgaaagcaaacaaatgtgTAGCATCTGCGGCCGTCTGTTCCCGgataaatcgaaaatgattgcACACGAGAAAACGCATCTGGGCATAATGACATCATGTAATATTTGTGGCAAAAAATTCATGCACAAAACTTACCTTCGGAAACATATTATGGGCGTGCATACCAATGAACGACCGTTTGCCTGTGGAATTGACGGATGCGAATGGCGATTCTCTTATCAGCCATGTCTGAAGCGACATCAAGCACGTCGACATGGCTTGGTCAACAATCCAAATCAATGTccgatttgtggaaaatgcTTTCCAGATAGTACCTACCATCTCAAGAGGCATCTCAAAGCCCATGCAAATAACACGGCCAAAGAATATTTCCCCGAACCAACACAAGATCCATCACAACCAACAAACTAA
- Protein Sequence
- MTSMDNLIAPQFAAIKQDNVIGDWFHCQFCPMSFGMYDEYKAHTFGHFSTQTCTGCNVRLIQICDKWFEVHTVANCQNNHHVHTFNTNNAGHNDNGEIMVIKQEPPAEMEAAQLDELLNVKPDVDLDDFGEIFAANLNTIEMSENNGGFDTTQQHQNSNDISQLNYQVVSITVKEKHENKRTKGFQCRFCDKVVLSRFRLDSHIQSHHMDNKTSCKHCGRNFTSFQRLDNHVKRCTSNNKKRPYLRSHPHRPTENFTCDLCGSVLKKFRTLFDHMNEVHSSKFTFKCRICQRKYPSRYYLTKHLNRHKQAFENRLANDASNVGDLDEHLMERRKYARIHPHRPAVDFTCDICGKAISRFDMLEEHMSISHSARDSFQCNICLRTYPNRYFLQKHKARHKNAAANGIEMLEEDLDKGLMERNKYHRLAPGERRSDLTCDECGREFKHHYLLMEHKTSKHSGESVFECRKCGRFYPNRYYLTKHMKRHEEAEKCGIPEDQLPQDLDVGLMERAKYVRADRNERKTVFDCDECSRSFNKFCLLTEHKRSRHGYGLSCRKCNRSFASRKKFAKHMKRHDQEISAENDRNPIEHEPYVHTNVYAYQPKPEYVCNSCGLKYNTHELLKLHMASNHSNHLNTANLEIIEIQHNLSIKPESHEKVEEEIEEGVEEIVKEEEKIEKEEEERGREKNGARRRKMEKQNRKEKEQHDNSDEDLVQREYLRAHPHRPASNFTCEICQKVLSTYYSIKLHMRSRHTRKVRVKHPCPKCNKEFVSKIRLEKHRISKHPNVPDAPLDAPAEASKSKGVESKQMCSICGRLFPDKSKMIAHEKTHLGIMTSCNICGKKFMHKTYLRKHIMGVHTNERPFACGIDGCEWRFSYQPCLKRHQARRHGLVNNPNQCPICGKCFPDSTYHLKRHLKAHANNTAKEYFPEPTQDPSQPTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -