Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: B0310.2
Assembly: GCA_009176505.1
Location: VUAH01000017.1:1112418-1115317[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00064 0.038 14.6 2.3 1 23 272 295 272 295 0.98

2 11 2.5e-05 0.0015 19.0 1.3 1 23 317 339 317 339 0.98

3 11 6.5e-06 0.00039 20.8 2.9 1 23 345 369 345 369 0.97

4 11 0.00047 0.028 15.0 1.6 3 23 383 403 382 403 0.98

5 11 8.2e-05 0.0049 17.4 0.1 2 23 410 431 409 431 0.96

6 11 4.6e-07 2.7e-05 24.5 0.2 1 23 437 459 437 459 0.98

7 11 2.3e-06 0.00014 22.3 0.2 1 23 465 487 465 487 0.99

8 11 0.00021 0.012 16.1 0.1 1 23 493 517 493 517 0.98

9 11 0.00026 0.016 15.8 1.5 1 23 523 547 523 547 0.96

10 11 2.1e-06 0.00013 22.4 2.9 1 23 553 575 553 575 0.99

11 11 0.0023 0.14 12.8 5.7 1 23 581 603 581 603 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00064	0.038	14.6	2.3	1	23	272	295	272	295	0.98
2	11	2.5e-05	0.0015	19.0	1.3	1	23	317	339	317	339	0.98
3	11	6.5e-06	0.00039	20.8	2.9	1	23	345	369	345	369	0.97
4	11	0.00047	0.028	15.0	1.6	3	23	383	403	382	403	0.98
5	11	8.2e-05	0.0049	17.4	0.1	2	23	410	431	409	431	0.96
6	11	4.6e-07	2.7e-05	24.5	0.2	1	23	437	459	437	459	0.98
7	11	2.3e-06	0.00014	22.3	0.2	1	23	465	487	465	487	0.99
8	11	0.00021	0.012	16.1	0.1	1	23	493	517	493	517	0.98
9	11	0.00026	0.016	15.8	1.5	1	23	523	547	523	547	0.96
10	11	2.1e-06	0.00013	22.4	2.9	1	23	553	575	553	575	0.99
11	11	0.0023	0.14	12.8	5.7	1	23	581	603	581	603	0.96

Sequence Information

Coding Sequence: ATGACAACACAATTTAGCGAAGATTTTAACAATTTAGCGAAGatttgtcgttgttgcttatgtaaaaatggtgaaatgcGCCCATTGTTCGGAAGCTGCCTCGACAATATGCTATCCTTCGTTGCTGATATCGACGTACACGCCAATGATGGATTGCCGAAATTGATGTGTGTGCCGTGTGTATTGCAAGTGAGTCGAGCATTTACGTTCAAACAACAATGTCGACGGTCAGATCAATCTTTGAAATCTTTTCTGGGCAAATTACCACCTGCATCAGACAATAATCACATCGAAGATGGTTCGACAAGTCTTAGAGCGAATAATGTTATGCAACCTAAAGTTGAGAACGTCGTCGTACAAGTAGCTGCTTTGGAGGATGGTATGAAGGAGCATACATTTCAGCTCCAGTCCAATGAGACTGAGACAGATAATTTGGATGCAGAACTAGTTTTGGACGTCCTAACGTCAGAAATCGAAACGAGCTCATTTGAGGAGGAAATCGAATTGTCTAGTTTGCCCAGTGAAACACAATTCTCACCAGTCGCCtctgaaaatattcaacaacaatTGGCGGTTGATGGTGTCTTGTTGAATGATGTCCaaggaacgaaaaaagaaaatcttcCTCAAAAGTCGTTCGGAGTctatttcgatgaaataaaattggatgTTGCACAAGTATCCCTGACCGATGAAACATTCGACGATATTCCAGCCGATGAAAGTGAtgtagacgaaaaaaagatgtCAACAGATGAGTTCATCTGTGACATTTTGTCGGATGACAAGTTGAAAACAGGAATTCGATCTAGTTTCAAATGTACCAACTGTGACTTACACTTCGAAACAGAGGAAAAACTGGACACGCACATGCAATCTTCACACACTACTGACACAAACACATCCGATGAAGCAAAAgatgcgaataaaaatgaaacaaagaattCGTTCGAGTGCCCCGATTGCCATAAAGTGTTCGCTGAGAAGAAGATTTTAAAAcgccatttgaaaattcacaGTCCAATCAAACCGCATACTTGTCCACATTCTGAGTGTGGTATGTCATTCGCCGAAAGCAGCAATCTTTCGAAACACATGAAAAAGCACACTGGTGAACTGCGTAACGTAATCGGCAAGCCCAATCTTTGCCAAGTGTGTGGAAAAGGATTTAAATGGGCGAGCTCCCTGAGCAAGCATATGAAACACCATACACGGCACAAAATCCTAAATTGTCCATATTGTCCAAAGTACTACGTAGAAGCCAGATCTCTGAATATACACATGCGTTACCACACGGGGGAAAAGCCATTCGTTTGCGAGGTGTGCAAAAAAGGATTTACGCAAATGGGCAATTTGGAAAAACATATTCGAATTCATACCGGCGAGAAACCATTTAAGTGCCCAATTTGTTCCAAAGgTTTTTCCCAAAGTGGTTATGTGGCGATCCATTTAAGAACTCACACAGGCGAGAAACCGTACCGCTGTGATGTAGAAAACTGTGGAAGGGCATTTGCGGGATCGAATACGCTTGCGATACACAAGAGAACCCATAGTGGAGAACGGCCTTATCCTTGTTCTCACTCTTCGTGTGATAAAACTTTCGCTCGACAAGAAACGGCCAACATTCACCAACGAACTCATACAGGAGAAAAGCCATATCGATGCGAGATCTGTCATCGTGGTTTCACTAGTTCGGGTCATTTAACTGGTCATATACGTTCACACAGTGGAACGAAGACCCATGAATGCAAATGTTGTAAAAAACGATTCGCTGGAAGTAGCAGCCTCAAAGTTCATATGAAATCACACTCATTTTCCTCAGAAAAGGCttcgcagcagcagcagcagcagcaagaaCAACAGCCACAGCCGTCTCAACAGCAGATCTTTGATACCAAGACAACAGTATTTGAGTGCAATATGTGTAAAATGAACATTCCGTCATCGGCTCTTTCGTCCACGGAAGAACTACCCTATAATCACGAACTTATCGATGATGTGCtaatttgttcaaatgtgGCTTCAATTATTGATAATGGTAAAATTATCGAAGGTATTCACGATGAAAACGGAACAAACATCATACTGACGACAACGACCCATATCGAAAATGGCCAACAATTGTTAATTAATCTATCCGATTTAAAATAG
Protein Sequence: MTTQFSEDFNNLAKICRCCLCKNGEMRPLFGSCLDNMLSFVADIDVHANDGLPKLMCVPCVLQVSRAFTFKQQCRRSDQSLKSFLGKLPPASDNNHIEDGSTSLRANNVMQPKVENVVVQVAALEDGMKEHTFQLQSNETETDNLDAELVLDVLTSEIETSSFEEEIELSSLPSETQFSPVASENIQQQLAVDGVLLNDVQGTKKENLPQKSFGVYFDEIKLDVAQVSLTDETFDDIPADESDVDEKKMSTDEFICDILSDDKLKTGIRSSFKCTNCDLHFETEEKLDTHMQSSHTTDTNTSDEAKDANKNETKNSFECPDCHKVFAEKKILKRHLKIHSPIKPHTCPHSECGMSFAESSNLSKHMKKHTGELRNVIGKPNLCQVCGKGFKWASSLSKHMKHHTRHKILNCPYCPKYYVEARSLNIHMRYHTGEKPFVCEVCKKGFTQMGNLEKHIRIHTGEKPFKCPICSKGFSQSGYVAIHLRTHTGEKPYRCDVENCGRAFAGSNTLAIHKRTHSGERPYPCSHSSCDKTFARQETANIHQRTHTGEKPYRCEICHRGFTSSGHLTGHIRSHSGTKTHECKCCKKRFAGSSSLKVHMKSHSFSSEKASQQQQQQQEQQPQPSQQQIFDTKTTVFECNMCKMNIPSSALSSTEELPYNHELIDDVLICSNVASIIDNGKIIEGIHDENGTNIILTTTTHIENGQQLLINLSDLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -