Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000001.1:2627685-2630850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.06 3.6 8.3 0.6 1 23 14 36 14 36 0.97

2 23 6.9 4.1e+02 1.9 0.2 2 20 198 214 197 218 0.76

3 23 0.054 3.2 8.5 0.3 1 22 224 245 224 248 0.88

4 23 0.0022 0.13 12.9 2.5 1 23 258 281 258 281 0.97

5 23 0.0002 0.012 16.2 3.6 1 23 287 309 287 309 0.97

6 23 3.7e-05 0.0022 18.4 0.6 1 23 315 338 315 338 0.97

7 23 0.022 1.3 9.7 0.1 1 21 344 364 344 365 0.93

8 23 0.019 1.1 10.0 1.4 1 23 386 409 386 409 0.98

9 23 0.00037 0.022 15.3 1.2 2 23 415 436 414 436 0.97

10 23 1.8e-05 0.0011 19.5 0.3 1 23 445 467 445 467 0.97

11 23 2.4 1.4e+02 3.3 1.2 1 23 474 498 474 498 0.96

12 23 1.7 1e+02 3.8 0.1 2 11 647 656 646 667 0.79

13 23 0.51 31 5.4 0.6 3 20 675 692 673 694 0.93

14 23 0.068 4.1 8.2 8.2 1 23 704 727 704 727 0.95

15 23 0.0063 0.38 11.4 4.0 1 23 733 755 733 755 0.97

16 23 0.0023 0.13 12.8 0.3 1 23 761 784 761 784 0.96

17 23 0.003 0.18 12.5 0.1 3 20 792 809 791 811 0.94

18 23 0.00083 0.05 14.2 0.2 1 23 832 855 832 855 0.97

19 23 0.00017 0.01 16.4 2.5 1 23 862 884 862 884 0.97

20 23 0.00042 0.025 15.1 0.2 3 23 895 915 894 915 0.96

21 23 0.002 0.12 13.0 4.6 1 23 921 945 921 945 0.99

22 23 0.36 21 5.9 3.2 1 23 951 976 951 976 0.94

23 23 0.00026 0.016 15.8 0.5 2 23 984 1005 983 1006 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.06	3.6	8.3	0.6	1	23	14	36	14	36	0.97
2	23	6.9	4.1e+02	1.9	0.2	2	20	198	214	197	218	0.76
3	23	0.054	3.2	8.5	0.3	1	22	224	245	224	248	0.88
4	23	0.0022	0.13	12.9	2.5	1	23	258	281	258	281	0.97
5	23	0.0002	0.012	16.2	3.6	1	23	287	309	287	309	0.97
6	23	3.7e-05	0.0022	18.4	0.6	1	23	315	338	315	338	0.97
7	23	0.022	1.3	9.7	0.1	1	21	344	364	344	365	0.93
8	23	0.019	1.1	10.0	1.4	1	23	386	409	386	409	0.98
9	23	0.00037	0.022	15.3	1.2	2	23	415	436	414	436	0.97
10	23	1.8e-05	0.0011	19.5	0.3	1	23	445	467	445	467	0.97
11	23	2.4	1.4e+02	3.3	1.2	1	23	474	498	474	498	0.96
12	23	1.7	1e+02	3.8	0.1	2	11	647	656	646	667	0.79
13	23	0.51	31	5.4	0.6	3	20	675	692	673	694	0.93
14	23	0.068	4.1	8.2	8.2	1	23	704	727	704	727	0.95
15	23	0.0063	0.38	11.4	4.0	1	23	733	755	733	755	0.97
16	23	0.0023	0.13	12.8	0.3	1	23	761	784	761	784	0.96
17	23	0.003	0.18	12.5	0.1	3	20	792	809	791	811	0.94
18	23	0.00083	0.05	14.2	0.2	1	23	832	855	832	855	0.97
19	23	0.00017	0.01	16.4	2.5	1	23	862	884	862	884	0.97
20	23	0.00042	0.025	15.1	0.2	3	23	895	915	894	915	0.96
21	23	0.002	0.12	13.0	4.6	1	23	921	945	921	945	0.99
22	23	0.36	21	5.9	3.2	1	23	951	976	951	976	0.94
23	23	0.00026	0.016	15.8	0.5	2	23	984	1005	983	1006	0.94

Sequence Information

Coding Sequence: ATGAATAAAGCGTTGGAGAAAATCTGTTCTGCAGCAGtgcaCCAATGCTTATTTTGTCCGCAAACATTCGGTAGTGCCAGTGAAAAAGACGACCATATTCTGagtcatttttcaaggaaatCATGTGGCAAGTGTAATCAGAGCTTGATTCAAATCGGTGGCACTTTTTATGTCCAACACAATGCAGTCACATGCATCAAACGAGATTGTGAAGTTCACATCGAGTCGATGTTTGTCGATCAGCCAATTCAGCCCGCTTTGAAATATGAACATGAAGAGGAAAGTGAATTGTTCAGCGATGCGATTTCAGGACCAGAGGCACAAGGATCACAAATCAAAGATTCgacaatcgaaataatttctaCAAATACTTCGGCAAACATTTATCAGACTGAACAGGACCAGATGCTACTTTCCGAATCGATCTCTTTAGCGGAAATGATTATCAAGGATGAGCCAGCAGACGGAGCGCGTGGTTTATTTGAACAGGACGACGAATTGAGTAATAATCAGTACCTCCAAACAGATGAACATCAGCCAGCACCAAATACTGTGCAGCAAACGAAGAAgcgaagaatgaaaaaaccgCTTGAATGTGATATTTGTGGTATAATATTGAGAAGTGACCTGCACAGACATAAGGTGCTTGCTCATAGTCAACCCGGAATGCATTTTTGTCCAATTTGCGTCCAAACATTTCAAACTACTGGTGAATTATCAGAGCACAGAGCCATTGTTTCACATTGTTCATCAAAGAAAAATCGCGGACTACATAAATGTAGCATTTGCAATGCCATACTAAAAACGAGAACATCGTTTCTAAAACATATGAAATCCATACATAGTCTAAATACTTTGCATAAATGTAACATTTGTGAAGCATCGTTTACGCAAAAGTCTGCCCTTGATAAACACCATGATCGCCATGAAGACAGAACCCACTATCAATGTgatatttgcaacaaaatataCGCGAGAAACGATGTACTTCGTCGTCACAAATTACGGATGCACAGTGATCCAGGAACACACGTTTGCAATATTTGTGTCAATGTTTTTACCAGCGAAAACGAGTTGATAGAACATCAAACGATGTGTCGAACGAAGCGGGATCAGTGCgttaaagcaaaaaaatccAGAGGTGAAAATGCATCATACGAATGCTACTTGTGCCATAAATTATCACCAAACCATGGAGGCTTGCTCGCTCACATTCGAATGAAACACAGCACATTTGGTGTGAAATGTGACGTGTGCGGATTGTGCTTTTTGTCAAACAGTCTGCTTGAAAAACATCAGCTACGTCATATTGACAGCTTGAGAAATCGGCTATTTGTGTGTAGCATTTGTGGAAAGTCATTGAAGACGGATTCAGGGCTCAAGAGTCACATGAGCCTTCATAGTAATACAGAAAACCTTTACAAATGCTTACTTAAAGGTTGCGAAAAGTATTTTATGACCATACTAGACAGGAATAATCACACACAAACCCATACCAGCGAAAATATTGAGGCGACAAACGAACAAGAAGATACGGATTTGAGTGAAAATGAGCAGAATGACTTAATGGATGGACGAAACTTGGATAAAGCTCCTGACCAGGAACAGCTCAACCGCTATTCTATTACTTCAGAAACAATTCCGAAAAGTGTAACACACATCAAAGTAGAGTCGACAATTGATTACTCATTAGACAAATTACAAGAACAACATTTATCGCTGAGCAAAAGCAATACAGTGGAAACGGTTCCGCAGATGGGTTTAGGTGATACATTCAAGGCAGAAGACAATTTTGTAGAACCAAAAGATTCTTGTGCAGAACAACCATTTCCGAATGTATCACATGTCAAGCCAAGCAAAGCAATCCCCGAAATACATTTACAGTCAGCACCAAGTATGgcacagcaaacgaaaaagagaagaacCAGAAAACAGGTTGAATGTGATGTTTGTGGTAAAACATTGACAAGTGGCCTGTCCAGACATAAGGTGCTTGTTCATAGTCCACCCGGAACGCTTTTTTGTACAATTTGCGCCCGAATATTTCAAACTACTGATGAATTTACGGAGCACCGATCCCATTGTTTATCAAGAAAGAACGGAGGACTGCATAAATGTAATATTTGCAATTGCACACTGAAATCGAgatcatcattttattcacacatgaaattcaaacacaatCCAAATAATATACATAAATGTAGCATGTGTGAAGCATCGTTCATGCATAAGTCTGCCCTTGATAAACACTACGATCGCCATAAGAATGGAAACGACTATCAGTGTAATATTTGCGACAAAATCTATGCGAGAGGAGATATACTTCGTCGTCACAAATTACGGATGCACAGTGATCCAGGAacaaatatttgtaaaatCTGCACCACTGTTTTTGCCACCAAGAACCAGTTGGTTGAACATCAAGTGATGTGTAGAACGAAACGGAATCAGTGCGTTAAAGCCACTAAATccagaaataaaaatgcagtATACGAATGCTATTTATGCCAAAAAGTATCACCAAATCATGGAGGTTTGCGCGCTCACATACGATGGGCACACAGTGCAGATGCAATTAAATACAAATGCAACATTTGCGACAGAAAATACAACAATCGAACCGCACTCAAACTACATTCCAAGTATCATCTTCAACCGGCAAATGATCGAAAGCGGATGTGTAATGTGTGTGGCAAATATCTAGCGAATAACGAAATGCTTAAGAATCACATGTACATTCACACTAATGAAAAACCGTATAAATGCAAACAGGAGGGATGCGATAAATATTTCAGAACCACCATGAACAGGCACGAACATATGCGCACTCACACTGGTGAGAAGCCATTCAAATGCACTGTCGATGGATGCGATCAACGATTTGCATATGGGATCGATTTTAAGCGCCACAAATTCAAATGCCATGGTATTTTCACCAAAAAGATCCCATGCACAATTTGTAATGAAATTTTCCCAGAGAATTTACTATTGAAGAAACACATGCAACGGCATCATGTTAACACGTAG
Protein Sequence: MNKALEKICSAAVHQCLFCPQTFGSASEKDDHILSHFSRKSCGKCNQSLIQIGGTFYVQHNAVTCIKRDCEVHIESMFVDQPIQPALKYEHEEESELFSDAISGPEAQGSQIKDSTIEIISTNTSANIYQTEQDQMLLSESISLAEMIIKDEPADGARGLFEQDDELSNNQYLQTDEHQPAPNTVQQTKKRRMKKPLECDICGIILRSDLHRHKVLAHSQPGMHFCPICVQTFQTTGELSEHRAIVSHCSSKKNRGLHKCSICNAILKTRTSFLKHMKSIHSLNTLHKCNICEASFTQKSALDKHHDRHEDRTHYQCDICNKIYARNDVLRRHKLRMHSDPGTHVCNICVNVFTSENELIEHQTMCRTKRDQCVKAKKSRGENASYECYLCHKLSPNHGGLLAHIRMKHSTFGVKCDVCGLCFLSNSLLEKHQLRHIDSLRNRLFVCSICGKSLKTDSGLKSHMSLHSNTENLYKCLLKGCEKYFMTILDRNNHTQTHTSENIEATNEQEDTDLSENEQNDLMDGRNLDKAPDQEQLNRYSITSETIPKSVTHIKVESTIDYSLDKLQEQHLSLSKSNTVETVPQMGLGDTFKAEDNFVEPKDSCAEQPFPNVSHVKPSKAIPEIHLQSAPSMAQQTKKRRTRKQVECDVCGKTLTSGLSRHKVLVHSPPGTLFCTICARIFQTTDEFTEHRSHCLSRKNGGLHKCNICNCTLKSRSSFYSHMKFKHNPNNIHKCSMCEASFMHKSALDKHYDRHKNGNDYQCNICDKIYARGDILRRHKLRMHSDPGTNICKICTTVFATKNQLVEHQVMCRTKRNQCVKATKSRNKNAVYECYLCQKVSPNHGGLRAHIRWAHSADAIKYKCNICDRKYNNRTALKLHSKYHLQPANDRKRMCNVCGKYLANNEMLKNHMYIHTNEKPYKCKQEGCDKYFRTTMNRHEHMRTHTGEKPFKCTVDGCDQRFAYGIDFKRHKFKCHGIFTKKIPCTICNEIFPENLLLKKHMQRHHVNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -