Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006196.1:5909381-5915086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.6e-05 0.0022 18.5 0.7 1 23 157 179 157 179 0.95

2 15 0.00033 0.019 15.5 0.7 1 23 185 207 185 207 0.97

3 15 4.5e-05 0.0027 18.2 0.1 1 23 307 329 307 329 0.96

4 15 0.058 3.5 8.4 0.1 2 23 336 357 335 357 0.97

5 15 1.5e-05 0.00091 19.7 0.7 1 23 388 410 388 410 0.97

6 15 0.055 3.3 8.5 0.2 1 23 426 448 426 448 0.94

7 15 0.0025 0.15 12.7 0.3 2 23 455 477 454 477 0.96

8 15 0.051 3.1 8.6 2.4 2 19 485 502 484 503 0.95

9 15 1.5e-05 0.00089 19.7 4.5 1 23 512 534 512 534 0.97

10 15 0.0012 0.073 13.7 0.6 2 23 540 561 539 561 0.96

11 15 5.3e-06 0.00031 21.1 0.5 1 23 569 591 569 591 0.98

12 15 0.0051 0.3 11.7 0.2 3 23 599 619 597 619 0.97

13 15 2.1e-05 0.0013 19.2 0.2 1 23 625 647 625 648 0.95

14 15 0.015 0.91 10.2 0.2 1 23 662 684 662 684 0.96

15 15 0.0048 0.29 11.8 0.0 1 20 1100 1119 1100 1122 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.6e-05	0.0022	18.5	0.7	1	23	157	179	157	179	0.95
2	15	0.00033	0.019	15.5	0.7	1	23	185	207	185	207	0.97
3	15	4.5e-05	0.0027	18.2	0.1	1	23	307	329	307	329	0.96
4	15	0.058	3.5	8.4	0.1	2	23	336	357	335	357	0.97
5	15	1.5e-05	0.00091	19.7	0.7	1	23	388	410	388	410	0.97
6	15	0.055	3.3	8.5	0.2	1	23	426	448	426	448	0.94
7	15	0.0025	0.15	12.7	0.3	2	23	455	477	454	477	0.96
8	15	0.051	3.1	8.6	2.4	2	19	485	502	484	503	0.95
9	15	1.5e-05	0.00089	19.7	4.5	1	23	512	534	512	534	0.97
10	15	0.0012	0.073	13.7	0.6	2	23	540	561	539	561	0.96
11	15	5.3e-06	0.00031	21.1	0.5	1	23	569	591	569	591	0.98
12	15	0.0051	0.3	11.7	0.2	3	23	599	619	597	619	0.97
13	15	2.1e-05	0.0013	19.2	0.2	1	23	625	647	625	648	0.95
14	15	0.015	0.91	10.2	0.2	1	23	662	684	662	684	0.96
15	15	0.0048	0.29	11.8	0.0	1	20	1100	1119	1100	1122	0.93

Sequence Information

Coding Sequence: ATGGATCCTGAGTATGGAATAACCTGGGCTGAGGGGGTGGAACATGAGCATGGCCACCAAATAATATGCGAATCCCGTTCGGATGAtttaatcgaagaaaacaatGACATCGAAGAGGATGAAGAGTATTTGGTTGGCGAAGAGATAATACCGTCAACGGAAATTATCACCATATCCAACAGTTTGGATCAAATAGCGGCCGAAAATTTGATCTACATGGCACAGGATGGCAGTGTTGCAAATATGGGTGATTTAATAGAAGAGCACGTCGATCAGGTCGACAATGCCGACTACAATGAACAACAGTATTTCGAGTGTCATGTCACCGAGGAGGTGATCACCGACGATTGGGTACAGCAACAAGGCGAAGACAGAGTTGAGGTGCCGGTGTATCAATTGGTGGGAAATGAACAAAGCGAGGAGGTGATGGTGCCACTTCCAACTGACGAGTACACGACATCACGTCCGTATCCGTGTGATTTTTGTAGTCGTCGCTTCCGCAAAAAGGCCAATCTTATGAATCACATGGTCGCGCATAAGAATGTGAAGCCGCATATTTGCAATTTGTGTGGAGCTCGTTACAtacgaaaaatggaattgatgaATCACTTGAAAGTGCACGCTCAGGTGCCGGATTCAAATTTGGAATACATGGGCCATAATGATGGTAAAAGTGCCGATGAGCAAGACGATGACGAAGAATCGCTATTGACCGTAATGCACACGAGTGAACCGGGCAAACAACGACGTCGAGCGGCGCAGGCAAATATAAGTGTAGCAAGAAAAGTGATTCGAACCGTTGAAAGTGGTAAAAAGATACCACCACAAAAGAAACGATACAACGAAAGTGCCGACACATCCACCAACTATGAAACAATTTTGCCCGATCAAATACCGGTGACGGATCCGAGCCGACCATTTGTCTGTCAAGTGTGTGGTGTTAGTTTTAGCCGAGAAAAAGCCTTAAATGCTCATGTATCGCTGCACGGTGTCGACAATGCAATCGAATGTGATACGTGCAATGAATTGTTCTGGTCAGCGGAATCGTTACAAGAGCACCAGAAAATTCATGAGGTCGATGATGAGAGCAGCGGTTCGGAGTATGAACCGGACGGTGATAAAACAGCTAGTGATGATGATTTCGATCAAAAATATGGCAATTACTATTGTAACATTTGTGGTATGGCGTTCCATCGACCCGAATTACTCAAACGACATGCCAAAGAACATAAAAACGACtacgaatcgaatcgaaatgacaGTGCCAATGAGAATCACTGCTGCAACGTGTGCGGCAGCACATTTGCCGAAGCATTGGATCTACTCGCCCATGCTGAAATTCATACCAGGGCTTCAGTACAAAAGTGCACATTGTGTGGCGAATCATTCGCACATGACAATGaaattcgacaacatattGCGACCGCACATGAAAAGGAGCTTACATCGACGACATGCCGCATGTGCGGCAAACACTGTAAAGACGAACGCACGCTGATGAAACATGCCTGGGACCATTCCAAAGAGAAAAACCATTCCTGTTTGAAGTGTGGCAAAACATTTTACAACAAAGCACGGCTCAAGCGTCACATGCAATCGCATCGCAATAAATCGGTCTCTTGTAATGTGTGCGGTGAAAGTTTCCCCGATGGTCGTACTCTAATGAACCATCGACATTCGCATACAAATTTATCGGGACGACAGTTTCCATGCCGTGAATGTGGTAAAACATTTGGATCGCGTAGCTCACAACAGATTCATATGCGAATACATACcgGTGAACGACCTTATGGCTGTCGATTTTGTTGGAAGGCATTTGCCGATGGTGGCACTCTGCGCAAACATGAACGTATCCATACAGGTGAAAAACCATATGCTTGCCCCGTATGTCCGAGAGCGTTTAATCAACGCGTTGTACTGCGTGAACATATTCGTTCACATCACTCGCAGCCCGATCCAAACTATGAAGACTCACTGATGCCATACTATTGCACGGTTTGCGGGAACCTTTTCAAAACGTCACAGGAAATTATACAACATTTGATTGAACACAGTGATGCGAATACCGTATCAAACCGACAGCCAGTTgTTGGACCGCGAAAATACAAACGGCGACGTAAGTTGAAGCCAGAAGAATTGGAATCGTTccgtaaatcgaaaaatgataCGACTCCCGGAAAATCCACATCAAAGCGAACGTCTCGCAAACGAGATGTatccgaacaaagtgatacataTTATAGTTCATCGTATGAGCACCAAGAGGATGTGAACTATGAATCGAGTCGAAATGACAATGAAATGGAGAATATTGAAGTGGACGAGCCCATAATTCAGCGAATACAAAGTGTTGGAACGCGCGTTAAGCATGAATCAGTTGATGACACAACCGATCCACTCTACACCGCCGACTATCTCGAAACAACACCAAGACGAAAATCACCCACAAAAAGACAATTGGCGGCACAGTCACTGGATGTTGcatcaccatcatcaccaTTGCATTCGTCGTCCACACAACGTCAGGCCCGGTTGATACATACCAGCAAAAAGAAAGTGTTGATCGAAACAAAGGGCGGACGAACGGCAACCAAAGTAAAAACAATCgtaacaacaaatgaaataaagaaagtGACGCCTGACGTGGATAACGGTGGAACACGGCGATCGAGTCGAGCGAAACCGCAAACAATAAAGAAAGTAGAAATGATGCAATCGCCATCGCCATCGCCATCCCGATCACTGACCAACGGAACACCACGATCGGCTAAATCGCAAGCTGCGATCagttcaaattcaaagttTCAGAACAATTTAATCGCCGAACTGTCGAAGAAGAGTTCGAATTTTAGTCCGGATGTTGTGAGCGATTTGGAAGAGATTTTAGGTTCACCAATTAAAACCACACGTGAAAGTCGCAGTGATCAAGTATCTCGAACGCAAACCAAATCGtacaatttgaatgcaaaagtCAGTGGAATGGTGCGTGTCGATTACAAATCGCAAACGGATGATGAAGCAAAACCACTCGCGACTCGTTCAAGTAAACGGCTGAGTAATCGTGTTCAACCGATGCCAAATGCTCTGACCAAATCGTCAAAAACCACCACTAGAACGGTGAAAAAATCATCGGTCGCATTCAATGCTGGCGTCGGTCTATCAAGCGAAGAGAGTCAAGAGAGTCAAGATGAGCCCGACGACAATTTACAATTATCAAACAATTTACCAGACAATATCGTGTTGAATATCAAGCAGGAGAAAGAGGTTTCATACACAATGACAGACGAAAATAATGGGTTCTCATGTGATATGTGTTCAGCCGTATTCAGCGATCGAGCACAATTGCTTGTACATGTTCCtgtacatatttaa
Protein Sequence: MDPEYGITWAEGVEHEHGHQIICESRSDDLIEENNDIEEDEEYLVGEEIIPSTEIITISNSLDQIAAENLIYMAQDGSVANMGDLIEEHVDQVDNADYNEQQYFECHVTEEVITDDWVQQQGEDRVEVPVYQLVGNEQSEEVMVPLPTDEYTTSRPYPCDFCSRRFRKKANLMNHMVAHKNVKPHICNLCGARYIRKMELMNHLKVHAQVPDSNLEYMGHNDGKSADEQDDDEESLLTVMHTSEPGKQRRRAAQANISVARKVIRTVESGKKIPPQKKRYNESADTSTNYETILPDQIPVTDPSRPFVCQVCGVSFSREKALNAHVSLHGVDNAIECDTCNELFWSAESLQEHQKIHEVDDESSGSEYEPDGDKTASDDDFDQKYGNYYCNICGMAFHRPELLKRHAKEHKNDYESNRNDSANENHCCNVCGSTFAEALDLLAHAEIHTRASVQKCTLCGESFAHDNEIRQHIATAHEKELTSTTCRMCGKHCKDERTLMKHAWDHSKEKNHSCLKCGKTFYNKARLKRHMQSHRNKSVSCNVCGESFPDGRTLMNHRHSHTNLSGRQFPCRECGKTFGSRSSQQIHMRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACPVCPRAFNQRVVLREHIRSHHSQPDPNYEDSLMPYYCTVCGNLFKTSQEIIQHLIEHSDANTVSNRQPVVGPRKYKRRRKLKPEELESFRKSKNDTTPGKSTSKRTSRKRDVSEQSDTYYSSSYEHQEDVNYESSRNDNEMENIEVDEPIIQRIQSVGTRVKHESVDDTTDPLYTADYLETTPRRKSPTKRQLAAQSLDVASPSSPLHSSSTQRQARLIHTSKKKVLIETKGGRTATKVKTIVTTNEIKKVTPDVDNGGTRRSSRAKPQTIKKVEMMQSPSPSPSRSLTNGTPRSAKSQAAISSNSKFQNNLIAELSKKSSNFSPDVVSDLEEILGSPIKTTRESRSDQVSRTQTKSYNLNAKVSGMVRVDYKSQTDDEAKPLATRSSKRLSNRVQPMPNALTKSSKTTTRTVKKSSVAFNAGVGLSSEESQESQDEPDDNLQLSNNLPDNIVLNIKQEKEVSYTMTDENNGFSCDMCSAVFSDRAQLLVHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -