Smos005589.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01006165.1:1791878-1794427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.2e-06 0.00025 21.4 0.1 2 23 75 96 74 96 0.96 2 19 4.8e-06 0.00028 21.3 0.7 1 23 102 124 102 124 0.97 3 19 0.0011 0.067 13.8 1.8 2 23 130 151 129 151 0.96 4 19 0.00022 0.013 16.0 1.8 3 19 160 176 158 181 0.95 5 19 0.00012 0.007 16.9 7.1 1 23 188 211 188 211 0.98 6 19 0.00017 0.01 16.4 4.3 2 23 220 242 219 242 0.97 7 19 4.2 2.5e+02 2.5 0.3 1 21 266 285 266 286 0.87 8 19 0.0019 0.11 13.1 0.2 2 23 298 320 297 320 0.96 9 19 0.00056 0.033 14.8 2.3 1 23 338 361 338 361 0.98 10 19 0.62 37 5.2 1.9 1 22 385 405 385 405 0.96 11 19 2.3e-05 0.0014 19.1 1.6 1 23 417 440 417 440 0.98 12 19 3.1e-05 0.0019 18.7 2.6 1 23 455 477 455 477 0.99 13 19 0.0027 0.16 12.6 1.1 1 23 481 504 481 504 0.96 14 19 0.00072 0.043 14.4 1.8 1 23 543 565 543 565 0.92 15 19 2.3e-06 0.00014 22.2 1.4 1 23 571 594 571 594 0.97 16 19 0.00011 0.0063 17.0 0.9 2 23 601 623 600 623 0.96 17 19 0.0063 0.38 11.4 0.2 2 23 677 699 676 699 0.96 18 19 0.00023 0.014 16.0 2.6 1 23 725 747 725 747 0.98 19 19 0.039 2.3 8.9 1.6 3 23 822 843 820 843 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAATCAAAGAAGAGCCAGATCCGAGGCTAAACGACCACGAAGTGATATATAGAACGGctgaaagtgaaattgaagACGGTGTGAACTATTATCAACATGTAAGCATAAGAGATCATTTGCGATCGATTTGGGGCGAGGAAACTGACATCAAACCGAAAATAGAACCTTTGGACAATGATGGGTCAAATGGCGATGGCACAACTAAAGAAGcaattaaatgtaaattttgtgGGAAAATATTCACTGATCCAGCGGATCTAGCTAGGCATAAGCTCATTCATTCGGAGAAGAAACAGTTCGAGTGCACGATTTGTCAGAAAAAATTTGCACGCGCAGATGGCTTGAAAAAACATAAATCGGTTCATGCTGAAAAAACACTAAAATGtgacaaatgtgaaaaaactTTCGGTTTAAAGGCTCATTTGGACAGGCATAAGCTCGTTCAttcacaaaaaagaaaacgattcGGATGTGACATTTGCCACAAGACATTTATGACAAAGTCCGATTTAACGCGCCACGACAATGAGAAACATAACTCGTCAAGGAAACTGTTTGAGTGTAAGGTTTGTCACAAAAATTTTTGCAGTCCAGATGGTTTTAAACATCATCAGAAAACAGCACATCAAGAGACACCACATAGATcaaataaatgtacattttgCGACAGAGCGTTCTGCAGTAAGTATTATCTTAGGATTCATAAACGAAGTGAACATTTCAGTTTGCTTCGACAACAGGAGAAATCAACGGGCGGTTTGCATGAACTATTCCTAGGTTTTCGAACATTTGAATGTTACCGATGCAAACTTGTAGCGAGTTTTACGGGGCTAAAGAGACACATGAAAGTGTGTCgcggaaagagagaaataattAGAACAGTCAAATGTGAGCTATGTGGCATTCGATACACAGCGATCCAAACTCTAAGGAATCACATGCGCAATGTTCATTCAGTTGTTTTGACAAATGAAGCGATAAAAAAGATGAAGATTGAAAAGCCGCATAAATGTACATTTTGCGATAAAGGATTCTTCAAGAAGGTTCAACTGGGCGTTCATGTTCGGACTGAGCATTTCGATCTGCTTCGACAACAGGACAAATCGACAGGTGGCTTGCACGAACAATTCCAAGGTATTCGAACATTTGAATGTTATCGATGCAAGTATTCGGGAAATCATTCTGACGTCCGGAAACACATGAGAACATGTCAAGAAGGACAAACCAAAAACGTTTTACCATTCAAATGTAACCTTTGCAACTATAgatattcaaacaaaagtAGTATAGAATTACATATGCGCATTCAACACCCAAAAGATATGATCAAAAAAGCAGAAGTAAATACAAAGATATTCCAATGTTTTGATTGCAAGACAATTCTTAGTAACTCCTATTCCTTACGGCAACATATGCGCAAGCATTCTCTGCCATTCAGATGTGAATACTGTAGCGAAAGATTCCCTCAGATCGATGAAAGAAACAAGCATCAACAGCAGTCACACTCtcatttgataaaaaatacaaaaaatcgTAAATATAAGTGCACACTTTGCAAATACTTCGGACCAATGTGGATGGCAATCAAGCATTTAGCAGACTTGCATGGAATCAACCAGTTCGAATGTGATATTTGTGGTCTGAAATGTTCCAGTCGCAAAAGTTTGATAAAGCATAGGCCCACTCATTTGCCAATGAAAAGATACCAGTGTGAAATTTGCCAAAAAAGTTTTCGCCAGCCAAACCTTTTATTAAAGCACAAACAACGAATGCATAACGAAGAAAAGCCACTCAAATGCACATTCTGCGACAGAAGATTCGTTAACAATTCGGATTTCATCATTCATAATAGGTCTGTTCATTTCAGTTTGCTTCGACAACTCGACAAATTGACGGGTAATTTGCATGAGCTTTTCCACGGTATTCGATCATATGAGTGTTACCGGTGCAAATATTCATCGAGTACAACGGTGATTAAGAATCACATGATGAAGTGTGAAgggaaaaaggaaaaaacaataaagtGTGAACTTTGTGATACCCAATTTAAAAACGTCCTTGTTCTTGCGAATCACATGCGcaacattcattcaatttctgtgaaaaaaCGAGCACAGGAAGAATCACTGAGAATCGCAGAACAATCGCAAAATAGTAAAAAGTTATTTCAGTGCTTTGATTGTAAGATTCACTACATACGCAAAGGAATGTTAAGTCGTCATATGATGCTCCATTCTGGAAAAGTCCCATTGAAATGTGACTATCGCACGAAGACAATCTCCCGAGCCGAGCTAAAAATTAGACATCAACGTAGTGTACACTTCCACTTGCTTAAAAATAATAGTCGGAAGATTCGCGGTGAAAAGAAGCTGGTCCAGAATGAGCAACGCTCAAAGAAATCTCTCGGCAGAGCTGTTGCCAAGTTTCAGGGAGATCGTCTCATGAAACCAATAAACTGTGGATTATGCAGCTATAGGTGTCAATTTAATATAGCTCTTAAGCGGCACATGCGCAATGCTCATTTGATTGCAGTGAAGGAATAG
- Protein Sequence
- MVRIKEEPDPRLNDHEVIYRTAESEIEDGVNYYQHVSIRDHLRSIWGEETDIKPKIEPLDNDGSNGDGTTKEAIKCKFCGKIFTDPADLARHKLIHSEKKQFECTICQKKFARADGLKKHKSVHAEKTLKCDKCEKTFGLKAHLDRHKLVHSQKRKRFGCDICHKTFMTKSDLTRHDNEKHNSSRKLFECKVCHKNFCSPDGFKHHQKTAHQETPHRSNKCTFCDRAFCSKYYLRIHKRSEHFSLLRQQEKSTGGLHELFLGFRTFECYRCKLVASFTGLKRHMKVCRGKREIIRTVKCELCGIRYTAIQTLRNHMRNVHSVVLTNEAIKKMKIEKPHKCTFCDKGFFKKVQLGVHVRTEHFDLLRQQDKSTGGLHEQFQGIRTFECYRCKYSGNHSDVRKHMRTCQEGQTKNVLPFKCNLCNYRYSNKSSIELHMRIQHPKDMIKKAEVNTKIFQCFDCKTILSNSYSLRQHMRKHSLPFRCEYCSERFPQIDERNKHQQQSHSHLIKNTKNRKYKCTLCKYFGPMWMAIKHLADLHGINQFECDICGLKCSSRKSLIKHRPTHLPMKRYQCEICQKSFRQPNLLLKHKQRMHNEEKPLKCTFCDRRFVNNSDFIIHNRSVHFSLLRQLDKLTGNLHELFHGIRSYECYRCKYSSSTTVIKNHMMKCEGKKEKTIKCELCDTQFKNVLVLANHMRNIHSISVKKRAQEESLRIAEQSQNSKKLFQCFDCKIHYIRKGMLSRHMMLHSGKVPLKCDYRTKTISRAELKIRHQRSVHFHLLKNNSRKIRGEKKLVQNEQRSKKSLGRAVAKFQGDRLMKPINCGLCSYRCQFNIALKRHMRNAHLIAVKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -