Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006164.1:4699892-4745862[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00011 0.0068 16.9 0.2 3 23 171 191 170 191 0.97

2 13 2.1e-06 0.00013 22.4 0.7 1 23 197 219 197 219 0.98

3 13 3.8e-06 0.00023 21.6 2.6 1 23 225 247 225 247 0.98

4 13 9.7e-05 0.0058 17.1 3.4 1 23 253 275 253 275 0.98

5 13 2.4e-05 0.0015 19.0 1.6 1 23 285 307 285 307 0.99

6 13 2.7e-06 0.00016 22.0 1.8 1 23 313 335 313 335 0.98

7 13 8.5e-06 0.00051 20.5 0.1 1 23 342 364 342 364 0.99

8 13 1.8e-05 0.001 19.5 1.1 1 23 370 392 370 392 0.97

9 13 4.8e-05 0.0029 18.1 1.0 1 23 399 421 399 421 0.99

10 13 6.1e-07 3.7e-05 24.1 1.4 1 23 427 449 427 449 0.98

11 13 0.00043 0.026 15.1 0.3 1 20 455 474 455 477 0.93

12 13 2.9e-05 0.0017 18.8 0.7 2 23 484 505 483 505 0.97

13 13 1.2e-06 7.1e-05 23.1 1.4 1 23 511 534 511 534 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00011	0.0068	16.9	0.2	3	23	171	191	170	191	0.97
2	13	2.1e-06	0.00013	22.4	0.7	1	23	197	219	197	219	0.98
3	13	3.8e-06	0.00023	21.6	2.6	1	23	225	247	225	247	0.98
4	13	9.7e-05	0.0058	17.1	3.4	1	23	253	275	253	275	0.98
5	13	2.4e-05	0.0015	19.0	1.6	1	23	285	307	285	307	0.99
6	13	2.7e-06	0.00016	22.0	1.8	1	23	313	335	313	335	0.98
7	13	8.5e-06	0.00051	20.5	0.1	1	23	342	364	342	364	0.99
8	13	1.8e-05	0.001	19.5	1.1	1	23	370	392	370	392	0.97
9	13	4.8e-05	0.0029	18.1	1.0	1	23	399	421	399	421	0.99
10	13	6.1e-07	3.7e-05	24.1	1.4	1	23	427	449	427	449	0.98
11	13	0.00043	0.026	15.1	0.3	1	20	455	474	455	477	0.93
12	13	2.9e-05	0.0017	18.8	0.7	2	23	484	505	483	505	0.97
13	13	1.2e-06	7.1e-05	23.1	1.4	1	23	511	534	511	534	0.97

Sequence Information

Coding Sequence: ATGTTTGAGCAACAAATCAAAGCTGAACCGATGGCATTCTATTCGACAACGACATGTCCGCCACAACCACCACCTCAGATGGTTCAGCCTATGGctccacaacaacaacagcaacaacaacaacctcAGCAGgctcaacagcaacagcaacagcagcaacaacaatcgcagccgcaacagcaacaggagCAGCAAcctcaacagcaacaacaacagcagcagcagcagcagcaacaacaacaacaacaacagcctcAGCAAACGGTTATCACAAATTTAACATTGCAACATGTGAAAGATATACCCGCACAATTGCTTCTCCAAAATCCCACACTGGATTGGAGGAATCGACTTCCAGGCGAAAATgagcaaacaaacgaagaGtCGCAACCACCGGATACTCCAATGTCTTCGGCATCGGATGCAACCAAACAAGAAATAAATACTGGTCTTCAAATGTCGATAACGCCGCAAACGAATGCCACGCATACAAGAAGCAAGCCACAAGCGTGTAAAGTGTGCGGCAAAATGCTGTCATCGGCCAGCAGTTATTATGTGCACATGAAATTGCATTCGGGAACGAAACCATTTGCTTGTACGGTTTGCGATGCTGCATTTTGCCGAAAACCGTATCTCGAAGTTCACATGCGAACACACACCGGGGAAAGACCCTTCCAATGTGATCTCTGTCTGAAACGATTTAGTCAAAAATCATCGCTAAATACTCACAAACGGATTCACACAGgCGAACGACCGTTCCAGTGCGGGCAGTGTCTGAAGACATTTACGCAGAAGTGCGCTCTAACATTGCACACACGAATTCATACGGGTTATTGGAGCATGCATAAACCGTTCCAGTGCACACAGTGTAATGCTGCATTCTGCCGGAAACCATATCTTGACATACACATGCGAATCCACACTGGAGAACGTCCGTTTCAATGCGAAGTTTGTCTGAAACgtttcacacaaaaatcaacgCTCAATATCCACAAGCGAATTCACACTGTTCAGGAACGGCCTTTTCAATGCGAACAGTGCCCAGCTGCGTTTGCGCGCAAACCTTACCTCGATATACACATGCGAACGCATACCGGTGAGCGACCTTTCGAATGCGAAGTTTGTTTAAAACGTTTCACACAGAAATCGTCGCTAAACATCCACAAAACCATACATACCGTTGGAAATCGACCGTTTCGATGTGAATTGTGTCCGGCCGCATTTTGTCGTAAGCCGTATCTCGATATCCATCAGCGCACACACACTGGCGAACGGCCATTCGAATGTGAGATTTGTTCAAAGCGATTCTCGCAGAGATCAACGCTGAATATTCACAAACGAATTCACACAGGTGAGAGACCGTACGCCTGCGATATTTGTAATAAAACATTTGCCGTTAAGAGCTATGTGACTGCTCACAGATGGTCGCATGTGTCTGAAAAACCTTTAAGCTGTGATCGTTGTTCCATGACATTCACGAGCAAAGCTCAGTTCGCCGTTCACATTCGCACACATTCAGCGGGTCAAAATTACGAATGTAACATTTGCGGACGAACATTCATACGGGATAGCTATTTGATTAGACACCACAATCGAGTGCATCGTGATAATCGAACAACAGCGAATAGCATCGCAACGATAAATAGTGTTGCAGCGGGCGATATGGGATCAACAATCAATGCCACATCGGAAACGGGTACCGTTTATGATGCGGCCACTGGCCAAGTGTGTGACTTAAGGTACGTATCGGATCTGCAGCAGTTGAGTGGAGCGCAAATAGCATCGCCAATGCAACCGGATCGTACAAATGCTGGCAAtgtaaatacaaaataa
Protein Sequence: MFEQQIKAEPMAFYSTTTCPPQPPPQMVQPMAPQQQQQQQQPQQAQQQQQQQQQQSQPQQQQEQQPQQQQQQQQQQQQQQQQQQPQQTVITNLTLQHVKDIPAQLLLQNPTLDWRNRLPGENEQTNEESQPPDTPMSSASDATKQEINTGLQMSITPQTNATHTRSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFACTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFSQKSSLNTHKRIHTGERPFQCGQCLKTFTQKCALTLHTRIHTGYWSMHKPFQCTQCNAAFCRKPYLDIHMRIHTGERPFQCEVCLKRFTQKSTLNIHKRIHTVQERPFQCEQCPAAFARKPYLDIHMRTHTGERPFECEVCLKRFTQKSSLNIHKTIHTVGNRPFRCELCPAAFCRKPYLDIHQRTHTGERPFECEICSKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKAQFAVHIRTHSAGQNYECNICGRTFIRDSYLIRHHNRVHRDNRTTANSIATINSVAAGDMGSTINATSETGTVYDAATGQVCDLRYVSDLQQLSGAQIASPMQPDRTNAGNVNTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -