Smos011395.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000859.1:3662-4194[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3 9e+03 -3.4 0.2 35 43 3 11 2 12 0.72 2 2 4.9e-08 5.3e-05 23.0 0.0 2 37 14 48 13 54 0.89
Sequence Information
- Coding Sequence
- ATGGTGCGTGCATACAAGAGAAAGACCGAGAAAAAGGATCCACAGAACATTGTTAGTGCTCTTTGTGCGAATCAAGTTGGTATGTCTATTCGTGCTGCTGCCCGGGATTTTGGAGTGAGCGACAGATCATTGCGTCGTCACTTGGGCACGAATCGACGGCTTGCAAATGAAAAGGAAGAGGAATATGACATGGACGACATGTCAGCTGAATTGACTCAAGGCAATGCACCATCATCCGATGTATCTATGTCAGCTGAATCGGCTCAAGGCGAGGCATCAACTTCAACTGCATCGGTCCAAGAATTGTCGGGCTTGCTTCAGGCCATCAAACCTTATCCAAAGACACCACCACGCAAACCTGGTAAACGTGGCCGAAAACCGCAAAAGACCGCGATTCTAACAGATGATGAAACCTTTTTGATGATCAAACAGGCCAAAGAAGTATGA
- Protein Sequence
- MVRAYKRKTEKKDPQNIVSALCANQVGMSIRAAARDFGVSDRSLRRHLGTNRRLANEKEEEYDMDDMSAELTQGNAPSSDVSMSAESAQGEASTSTASVQELSGLLQAIKPYPKTPPRKPGKRGRKPQKTAILTDDETFLMIKQAKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -