Smos018713.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- bab1
- Assembly
- GCA_009176505.1
- Location
- VUAH01006149.1:1426786-1474912[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-09 1.1e-06 28.3 0.0 2 35 307 341 306 347 0.92
Sequence Information
- Coding Sequence
- ATGTCAGTGACCGCAAATATAAGTGACAAAATACCCATGAAACTTAGCCAAAATGTGGAATCGCAGGCAGCATTTTGCTTGCGTTGGAATAATTTCCAATCGAATATGTTGGATGTGTTTGAGCGGCTATTTCTTGACGAATGCTTTGTGGATGTGACACTTGCGTGTGAGGGTCAATTAATCAAGGCACATAAAATGGTGTTGTCGGCAAGTAGTTcatattttcaagaaattttcaCAACAACACCCTGTACACATCCAGTCATCATCATGAAAGACGTTCCGCTAAAGGATTTACGCAAAATTCTCGAGTTTATGTACAAGGGTGAAATAAATGTAAGCAAACCGGAGATTACATCGTTGTTGCTTGTCGCTGAGGCGCTTCATGTACGAGGACTAGCACAAATTGACACAAGCAACGAAGAACCACAGCCATCCACCTCAAATGCGGACGTTTTAGCGGACATGCAAAAATCCAACAAAGTGAATCGGCTATTAAAACGCGAATCATCCGTTGAGTCATTGGTTTTGATCGAAGACGAATCATTACTGCAGCCAGCCAAACAAGCCAAAATGACCGCCAATGACACAAGCCAAAAATCAGAATCGCCACAAAACACACCAACCGATGAACTAGCCTATAATTCGATGCGCGAAGCCGAAGATGATTTCCTTGAAAGTGCGGCCGAATACGATGCGGATGATTTCGATCCAATCGCCGtcgattccattcaaatcaaacaagaaGAAGATATCATTAGCAATTACTCAACTGATAACGGGAACCTTCAAGGTTTCCATTGGATGGATCCAAAtgttcactcactcacatCGGAGATACTAGATATTGATGGAGTCAAACCGAAAACAGGCAAAAAAAGTGAAACGTcttcaaaattgaaagcaCCTTCATGGACGGCCGATCAATTACGGGAAGCGATCGATTCGGTGGTGAGGCAAAAAATGCGTTTCACACAAGCAAGCACCAAATACAATATACCGAAAGGAACGCTATACGATAATATTCTTGgtaaatcgaatcgaatggaaGTATTGGCCAAATCCGGTTTGAATGCACACGATGAAAATGCGATACTGGAATATTGTTGTGATCTCTCGGCGTCACCGTACAATCGGCGCACACGAAAACCGCTATCAGAAATTTTGCAGTTCGTCTATCGGTTGGAGAACTGTAATCATCAAGTGTTTGACGAGAATGGGAGATTCGCCTATCGATGGTGGTGGGCATTTTGTAAAAAGTATTCAATCGTCTCACTACATTACGATAACAAtgcaaatatcaaaatgaccgaacgaaattga
- Protein Sequence
- MSVTANISDKIPMKLSQNVESQAAFCLRWNNFQSNMLDVFERLFLDECFVDVTLACEGQLIKAHKMVLSASSSYFQEIFTTTPCTHPVIIMKDVPLKDLRKILEFMYKGEINVSKPEITSLLLVAEALHVRGLAQIDTSNEEPQPSTSNADVLADMQKSNKVNRLLKRESSVESLVLIEDESLLQPAKQAKMTANDTSQKSESPQNTPTDELAYNSMREAEDDFLESAAEYDADDFDPIAVDSIQIKQEEDIISNYSTDNGNLQGFHWMDPNVHSLTSEILDIDGVKPKTGKKSETSSKLKAPSWTADQLREAIDSVVRQKMRFTQASTKYNIPKGTLYDNILGKSNRMEVLAKSGLNAHDENAILEYCCDLSASPYNRRTRKPLSEILQFVYRLENCNHQVFDENGRFAYRWWWAFCKKYSIVSLHYDNNANIKMTERN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350849;
- 90% Identity
- iTF_01350849;
- 80% Identity
- iTF_01350849;