Smos014477.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- bab1
- Assembly
- GCA_009176505.1
- Location
- VUAH01006225.1:17814044-17821153[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-16 5.1e-13 48.6 0.0 2 45 449 493 448 493 0.95
Sequence Information
- Coding Sequence
- ATGTCCGTGcaacaattttgtttgcgcTGGAACAATCATCAGCCGAACTTTATATCAGTGTTTTCATCACTTTTACATAATGAGGCTCTTGTTGACGTTACGCTAGCGGCTGAAGGAAGACAGCTGCAGGCCCATAAAGTGGTGCTTTCGGCATGCAGCTCATACTTTCAGTCGCTGTTCACAACCAATCCTTGCCAGCATCCGATAGTGATATTGAAAGATGTCCAATACAATGATCTGAAAACGATGGTTGATTTCATGTACTATGGCGAAGTAAATGTGTCACAAGAACAACTTCCACATATACTGAAAACAGCTGAAATGCTGAAAATCAAAGGTTTAGCTGAGATGCCCGATCCAGTCTCCCTTACCAAATCGGAGAGCAAGTCATCGGATCAAACTGATCCGAATGTGCAAAACAGTGGCGTTGAGTCGATGTGGGGCAGCAGCGAATCACAGCAATATCACCAACAGACTCTGCAACATCAAACATCACACCAGTCTCAACAGCAGCAATCACAAAGACGCTCTCCAACACCTGGCACAATATCACCCTCGGCAAATCGACGAAAGCGGCTGCGAAAGGCCTCAACAGCTGGTTCTGGTTCCGCATCCACTGAGCGCACATCGGAAGAACATAGCAGCATCGAAGGTCAAGCAGATGCCACAAATCAACCACATGATGCAACGCACGAAAATGTTGATGCCGGAAATCACTCACATCACATTCATCAGATcTCTTATATTAAGAAATCGGATGAATTGTCAAATGTGTCGCAACAACAGATGCCCATAGATATTACGAGCCCAACTACGCCATCAGATCATGGAACGTCGGTTAGTTGTTCGCAATCACAAACACCGCACGGTGTGCAATGGATCGATTCGAATTATAGATTTACACTATCAACATGTACGACAAATGTTGGACTAGCATCATCCGCACACCACAACAATCCGGAAGATAATCAGCACACATCAAATACAGCTCCAACATCAAATACAGCTGTGTCATCGAATCACACTCAAATCCAATACGGATCGGCGTACACGAGTGGCCAGATGATTACAACATTAAATCCAAATACTTTAGTCAATAATTATTCGGCGAGTTTATCGACACCGACATCTCCACAAGGAAACGACTCAAATATAGTACAATATAGTCAAGGACCCACTCCAAACCAGTCACCTATTAATTCTAGTGgaacaacaaatcaacaacaacagtcaCAACAGCCGCCACAGGCCGCACAACCACAAACCACATCTTCATCGTCAACATCCACTGCCACAACATCACAAGCAGCCCCAAAACGGAAGCGATCAGTTAATCCACAGAGCGATGAGAATTTCCAACGAGCTCTGGAGGCAGTTCGTTACGGTGGCATTGGTTTCTGTAAGGCAGCTCGCATGTATGGTTGTAATAATCGAACGCTATGGCTTGAATACAAGAAGCGCGGCTATCCAATCAGTCGGCCGAGCATAaagaatcgaatcaaattggAACCGAACATGACACCGCCGCCAACATCGCCCGCACCAACCAATGAAGAAAACACATCGATGGAAAACTATGAACACAACATGACACCAGCCCAGCAATCGACAATTAACATGAGCGCCGTTCCACCGCCAGCCGAAACACCAACATCAATTATGTGCCCGCCACACGCACACCCAGCAATGGGCGTCATGAGTTTTCTCGACACAACGCGTACAACGCACGTGTCATTCGAACCGCATCCAACCACACTGCAGCGCCAACGATATCCAGACGGAGTAAATGTCAATCCAACGGCCATAAACTTACAAGGACTCAACTTTAATTCGATGTAA
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVFSSLLHNEALVDVTLAAEGRQLQAHKVVLSACSSYFQSLFTTNPCQHPIVILKDVQYNDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDPVSLTKSESKSSDQTDPNVQNSGVESMWGSSESQQYHQQTLQHQTSHQSQQQQSQRRSPTPGTISPSANRRKRLRKASTAGSGSASTERTSEEHSSIEGQADATNQPHDATHENVDAGNHSHHIHQISYIKKSDELSNVSQQQMPIDITSPTTPSDHGTSVSCSQSQTPHGVQWIDSNYRFTLSTCTTNVGLASSAHHNNPEDNQHTSNTAPTSNTAVSSNHTQIQYGSAYTSGQMITTLNPNTLVNNYSASLSTPTSPQGNDSNIVQYSQGPTPNQSPINSSGTTNQQQQSQQPPQAAQPQTTSSSSTSTATTSQAAPKRKRSVNPQSDENFQRALEAVRYGGIGFCKAARMYGCNNRTLWLEYKKRGYPISRPSIKNRIKLEPNMTPPPTSPAPTNEENTSMENYEHNMTPAQQSTINMSAVPPPAETPTSIMCPPHAHPAMGVMSFLDTTRTTHVSFEPHPTTLQRQRYPDGVNVNPTAINLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133365;
- 90% Identity
- iTF_01350839;
- 80% Identity
- iTF_01350839;