Smos000025.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000020.1:1398460-1400083[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-09 7.1e-06 25.8 0.0 4 44 258 297 255 298 0.92 2 4 6e-08 6.5e-05 22.7 0.0 4 39 307 342 305 348 0.89 3 4 0.0016 1.7 8.5 0.0 23 38 374 389 361 394 0.79 4 4 5.6e-10 6e-07 29.2 0.0 5 37 416 447 414 453 0.91
Sequence Information
- Coding Sequence
- ATGGACTCGCCAACAATACTGCGTACCATCAAATGGAATGATCATAAGAAGGAGATTATTGAGGAGCAACAGTATTTGTTTGACAATAATTTGGAAACGGACTGTACGCTAATCACTGCAAAAGGAGTCCGTATCCAAGCGCATCAGATTGTTTTATCGTCGTCGAGTGATTTTTTCCGGAAGATATTCAGCGAATTACCATCATCGGTCGAGTCACCAACAATTCATATACCAGATATTGATAGATCAGTATTAGAAGCTATACTTAAATTCATTTACACTGGCGAAACCAATATCGCTTCAGGCTATTTGACAACCTTACTCGAATTCTGTAATTTCTTGGATATCAAAGGATGTGTCGCTAATGGTTTTACATTGAATGGAGCTGGTTTGAAGGTAGGAGGTGATATCAATCCAAAAgatgaaaatggaatcaatAAGCTATACAATAGTTCGAGCGAGAGTTGGTCATGTGAAGAGTATATGGTGGTTACACAAGCGGAGAGTGTAAACAGTGAAGAGGAGAGCATTGAGCCTGATTATTTAGAGGAGTATCTAGAAGATGATGGAATAATTAAGGAGGAACAAATGtttatggaaaatgaataCGATGAAGGTAGGCAAGAAGACAATGAATTCATatcatttgaaatcgaaaaagaagtTGAAGATATGCCGAGTGTGTTTACAAAAGACGGTACAGACACTCCTGAGAGCAGCAGCAAACGTCAGCGAAATATAAGTCGACCAGGTACGCGCAGTACAAGCTCACAAATTGACAAGGCTTTGAACGAAGTAAACAATGGCAAAACCATTCACCGACTGTCGGTAGAATATAATTTACCACGTTCGACTTTGTACCATCGGTTCcgcaacaatgaaaatttgaaacagaACTATCGACTCGAACGAAAATCCGCACTAGACAGTGCTGTACAAGCCGTGTTACACGAACGACTAAGTTTGAAAATGGCTGCCGATAGATACAAAGTCCCAAAAACGGCTATTTGGCGCGAGGTACGAAAGTGTGAACAGTATCAACCATCGAATAAAGAAGTCACCGTGGAAAGACAAAATGCGCAGCGTGAAATTTTGTCCGGAAAAAGTTTGACCAGTATTAGTGCTAAATATGGTATACCATTAACTACACTTCATCGCGACAAGAAAAAGCTATCCGTCGAAGGAAAACTGCCGGAATCGTTTCGCGTTAAAGATCGGACTGAGAACTCTGAATATGGCCAAAGATTGGAGATGGCTTTGATAAAGTGTCGCAGCGGAATGTCACAGTATCAAGCGGCGAAATTGTTTAATATTCCAAAAGCGaCCATGTGGCGGTATGCAAACGCATTGAACAAATCCAACCGAAAATCAAAAGTCAAACAAAATGAGTAG
- Protein Sequence
- MDSPTILRTIKWNDHKKEIIEEQQYLFDNNLETDCTLITAKGVRIQAHQIVLSSSSDFFRKIFSELPSSVESPTIHIPDIDRSVLEAILKFIYTGETNIASGYLTTLLEFCNFLDIKGCVANGFTLNGAGLKVGGDINPKDENGINKLYNSSSESWSCEEYMVVTQAESVNSEEESIEPDYLEEYLEDDGIIKEEQMFMENEYDEGRQEDNEFISFEIEKEVEDMPSVFTKDGTDTPESSSKRQRNISRPGTRSTSSQIDKALNEVNNGKTIHRLSVEYNLPRSTLYHRFRNNENLKQNYRLERKSALDSAVQAVLHERLSLKMAADRYKVPKTAIWREVRKCEQYQPSNKEVTVERQNAQREILSGKSLTSISAKYGIPLTTLHRDKKKLSVEGKLPESFRVKDRTENSEYGQRLEMALIKCRSGMSQYQAAKLFNIPKATMWRYANALNKSNRKSKVKQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350886;
- 90% Identity
- iTF_01350886;
- 80% Identity
- iTF_01350886;