Basic Information

Insect: Sitobion miscanthi
Gene Symbol: Ctcfl
Assembly: GCA_008086715.1
Location: Lachesis:363605-372266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.062 13.6 2.4 3 23 233 253 231 253 0.96

2 11 3.8e-07 0.00014 22.0 0.7 1 23 259 281 259 281 0.98

3 11 0.0033 1.2 9.6 0.4 1 23 287 310 287 310 0.89

4 11 0.0087 3.2 8.3 3.4 1 21 316 336 316 338 0.95

5 11 2.2e-05 0.0079 16.4 1.9 1 23 344 366 344 366 0.99

6 11 3.8e-06 0.0014 18.8 2.0 1 23 372 394 372 394 0.98

7 11 0.00012 0.044 14.1 1.1 1 23 401 424 401 424 0.97

8 11 0.019 6.8 7.2 1.8 2 23 431 452 430 452 0.90

9 11 5.9e-05 0.022 15.1 2.9 1 23 458 480 458 480 0.99

10 11 3.5e-06 0.0013 19.0 4.3 1 23 486 509 486 509 0.96

11 11 2.3e-06 0.00084 19.5 5.0 1 23 523 545 523 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.062	13.6	2.4	3	23	233	253	231	253	0.96
2	11	3.8e-07	0.00014	22.0	0.7	1	23	259	281	259	281	0.98
3	11	0.0033	1.2	9.6	0.4	1	23	287	310	287	310	0.89
4	11	0.0087	3.2	8.3	3.4	1	21	316	336	316	338	0.95
5	11	2.2e-05	0.0079	16.4	1.9	1	23	344	366	344	366	0.99
6	11	3.8e-06	0.0014	18.8	2.0	1	23	372	394	372	394	0.98
7	11	0.00012	0.044	14.1	1.1	1	23	401	424	401	424	0.97
8	11	0.019	6.8	7.2	1.8	2	23	431	452	430	452	0.90
9	11	5.9e-05	0.022	15.1	2.9	1	23	458	480	458	480	0.99
10	11	3.5e-06	0.0013	19.0	4.3	1	23	486	509	486	509	0.96
11	11	2.3e-06	0.00084	19.5	5.0	1	23	523	545	523	545	0.98

Sequence Information

Coding Sequence: TTATTATTATTTTAGACTTTGAGCCGAGTGTTAGATGTCGGATCATCTGAAAATACTATGACTTTTGATGAGAGTTTCATAAAGTTGGAGGCTTCAACTTCTGACACTGAAACTATAACAGAAATACAAAATTACTTGGATTCATTTAATAAAGAAATTGAAGGAAATGAATTAACACACGAACAAACTGATGGGAACTCAGTAGATCCTGCACATCTCATGGGTCAAAATGACCAATATTATTATCAAGCAACTACAGGAGATGGCCAGATGGTTATGGTTGGAGGGCTTTCAGGACTTAATTTAGAAATTATGGCTTGCACAAATCAAAACAATTTAAATAACTTCACTGAAATTGCTCTGCCTAATGCACAAGATAAAATTAAAAAAGATAACCCTAAAATTGTTCCTTTAGGAGATAGTGGATATCAAACGGTCACTCTCGTTCAAGCTGACACTGACCCCCACAATTATGTTGTCTATGTAGTCAATCAAAATGATAGCAATTATGAAACATCAAACTATAGTAAGGAGATTTCTAAAGAAGACCATGATCCCGATGTTATAAATATATATAATTTCATTGATGGGGAAGATCCAACTCTACCAAAAAAACAAGAAATAGAAGAAGAAAATGACAAAACTAAAATACTTAAGTTAGTTCCTAAAAAGTCACAAACTTCTCTATTACATTTATGTGATTACTGTCCTTACTCTACTGGAAAAAGGTATTTGTTATCTCGTCATATGAAATCTCATTCTAAAGAACGTCCATTTATATGTACTATTTGTGATCGTGGTTTCAAAACTTTAACTTCTTTGCAAAATCATGTTAATACTCATACTGGAACAAAACCATATAGTTGTATAAGTTGTCCAAGTAATTTTACTACATCAGGAGAACTTGTTAGACATGTGCGGTATAAGCATACTCATGAAAAACCACATAAATGTACAATATGTGATTATGCTAGTGTAGAACTGAGCAAAATGAGAAATCACATGAGATGTCATACTGGTGAAAGACCATACCAATGTCCCCATTGTACTTATGCAAGTCCAGATACATTTAAACTGAAGCGCCATTTGCGTATACACACTGGTGAGAAACCATATGAGTGTGATATTTGCTTTACTAAGTTTACCCAATCCAACAGTTTAAAGACACACAGACAAATACATAGTGGGGAAAAGCCTGTATTTAAATGTGACCTTTGTCCAGCCACTTGTGGTCGAAAAACTGATTTACGTATTCATGTACAAAAGCTTCACACTTCCGACAAACCAATTAAGTGCAAGCGATGTGGTGATGCATTCCCTGATCGTTACCAGTATAAAGTTCACTGTCTTTCACACAAAGGGGAAAAATGTTTTAAATGTGAATTGTGTTCTTATGCTTCCACATTTCAGCGTCATCTTGAAACTCATATGTTAACACATACAGATGAAAAACCATTTCAATGTGATCAATGTGATCGGTCATTCAGACAACAACAATTACTACACCGCCATTATAATTTGCGTCATAATCCAGCATATATACGACCTCCTCCACAAGAGAAACCTTATCACTGTAATACATGCAAACTATCATTTAGACATAAAGGAAATTTACTAAGACATATGGAAATTCATTTGCAAGAATCAACTGGAAATTATCGAAAGACAGCATTAAAAAAAAAACTAGAATATATAGATTCAGCTGATGAGGATGAATCTGAGGACGACACAAGTACTCCATCAAGTGGAACTGGAGCTATAACAGTACAAGGTGAAGATGGACAGCAATATGTTCTGCTTGAAGTGATTCCACTTGGTGGTCAAGATCAGATAGATAACGCATCTACAAATGTATCAATAAAACAAGTTGACAAATCTTTTTCACCAAGTCAAAAAGACCTTACAGTTTTAGATCCACTGTCTTTGTTAGACGTGAAAGAAGAATGTGATGATGGCATTGAAAATTGTTTCGGTTTTGATGACAACGATGATGGTTAA
Protein Sequence: LLLF*TLSRVLDVGSSENTMTFDESFIKLEASTSDTETITEIQNYLDSFNKEIEGNELTHEQTDGNSVDPAHLMGQNDQYYYQATTGDGQMVMVGGLSGLNLEIMACTNQNNLNNFTEIALPNAQDKIKKDNPKIVPLGDSGYQTVTLVQADTDPHNYVVYVVNQNDSNYETSNYSKEISKEDHDPDVINIYNFIDGEDPTLPKKQEIEEENDKTKILKLVPKKSQTSLLHLCDYCPYSTGKRYLLSRHMKSHSKERPFICTICDRGFKTLTSLQNHVNTHTGTKPYSCISCPSNFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFTKFTQSNSLKTHRQIHSGEKPVFKCDLCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCLSHKGEKCFKCELCSYASTFQRHLETHMLTHTDEKPFQCDQCDRSFRQQQLLHRHYNLRHNPAYIRPPPQEKPYHCNTCKLSFRHKGNLLRHMEIHLQESTGNYRKTALKKKLEYIDSADEDESEDDTSTPSSGTGAITVQGEDGQQYVLLEVIPLGGQDQIDNASTNVSIKQVDKSFSPSQKDLTVLDPLSLLDVKEECDDGIENCFGFDDNDDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019633;
90% Identity: -
80% Identity: -