Smis000100.1
Basic Information
- Insect
- Sitobion miscanthi
- Gene Symbol
- -
- Assembly
- GCA_008086715.1
- Location
- ctg987:10261-13706[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-10 2.8e-06 26.7 0.0 5 36 1 32 1 35 0.94 2 2 0.00058 3.1 7.4 0.0 9 35 54 80 47 83 0.82
Sequence Information
- Coding Sequence
- ATGGAGTTGGCATTAAACGCAATAACTGCTGGTTCGTACTCCATCAGCCAGGCGGCTGTGGAATTTAATGTCCCCGAGACTACTTTGCGCAGCATTAAACCAAAGGCGGCTGTCAGATCATACGTCCGTACAAAGGACAACGTTGCCTTAAAGCGTGGCGTTGCTCTTGTCATTGAGTCTGGGTACTCGGTGAACGAAGCATCGAGGGTGGTGAAGGTTCCGCGAACCACTTTGCGGAAGGAACTTGAGATCGTTAGGAAGGACCGCGCTTCTGACGTACCGGTGCCGGTGTCGTCGTCTATCGTCGATAACGAGTTTGGCTACGGGGAACCGCGTGTCGTGTTACAGCCTAGGTCAGTAATGATTTCTGCTGCGGTGGGCGCCACGTCGGAACCGGCGACGGCTTCGGCGCTGGAGCCTGTCGGGTCGTCTCCATTACGGTCTACGGCTGGTATCACGACGCCGGAACGGCAGTGCGACGTCCAGCGTCCAGCAGTAGCGGAGTCGGCGGCCGAGGGTGCCACGTCGGAACCGGCGACGGCTTCGGCGATGGGACCTGTCGGGTCGGCTCCGTTACGGCCGTCCGTGACGCGTGGTACTTCGGCGCTGAGGTTCCGCATGCAAAACAAAATTATCTTCGAGGGCGACGGAGCCAAAACCGTGCCGACGATGTGCGTTCTAACCGACCGATCGGCCTACAATAGGCCTCCCCCTCCCGTGCCCACCAACCTGACACTTAGTCCGCAGCAATCGTTGGCCATCCCTCCGGCTGCAACGATAGAGAAATCCGTATCCAAATTTGAAAACGGAAAGATGCGCAAGGTCTTTGTGAAGGGCCTCGCGCACAAACGCAGTGCGTATTTCCCCCGGCAAAGAAATACTTCCGCATCCAAAGGCGGAGAATCGGAATACGTGCCCTTGACCACACCGGAAGGGGACGAAACCCTAATGGTGAAGGCGGTCGGAGATCAACCGAGGGGACATAATATATACACAACCCCGTCACCGATAAAGGACAGTGTATACGATTTCGTCGAGTCCGAACGATCTCGGTCCCGGTCTCCTATCAAGTCCCCGCCCACATATGCCATTGGCTCTCCAGTGGCCGGACCGTCTTGGCGGTCACCCGTCAGGCTAACCGGTATTCCGGACGGAATGGCCAAATCGCCGATCGTTATGTCACCCACTCCGTCGAGGCCCGTATCCGAATCGTCACCACTCAGGATCGATAACGAGTGGGTGGATACCGACGAAAGTGACGAGGGTTTTCGGCCCAGGCGCAGGACTGTTGCCGAAAAGCAACAGGTGGCCGACGACACCCAGTCGAGGAAGTCGTATACCCTCGTATCGATGTCGGCGATCGAGAATAAACTTGGGCCGTATTGGGTGGACCCAAGTTTCAGGAGCATCGCGCACGGTCTTACCGTCATGGGTAGGATGAAGGTGTACGGGGGGCACTGGAACCTCCCCGGGGTAAAAGACTTACCCAACCCCTTCAGCCGGTACTTGCGAAATGGCGACGAAGCGATACCGAACCCTGCATATATTGCTACAAAAGCAGTGCAGGAGCCAGCGCAGCCGGCGCGAGAAGTGACGCCACCACACCAAACAGTGGCGGATACTTCTTCGCAAAACGTGAGGACGTCGACGAAACACCAAGGTCTGAACAAGCGGTTGCCGGACCACCACCCGCTTATCGCGATGTTCCGGAAAACCCTTAAGATTATACACGGCGGTGAGTCCAATGCGGCGAACAATTACGTCGGTAACGTTTCGCGGATATTGTATTTCATCCACAATGAATTGGTTGGGATGAACACTCTGCCAAAACATTGGGCTGACCTGGTGTCGGCCGACATCAGCCACTACGAGAGGTTCATCGAACTACGTGAAAACCTGGGACAAACCAAGTCGAAGACGATAAATTATTTGAAAGACTTGCGCAAGCTATTTCAATATATACTGGACAATTATATACACACTGACACGACGTTCCCGAAGGGTTTTGACCTCATGCCGTGCGAGGCGACCGTGACGAAAATCAAAATACTCGCCTCAAACCTGACACTAATCTACCAGAGAAAGACCAAACAACAACCCGGCGAACTCTTCGTCCGAAAAACAATGGAGGCCGAAGAGCTTCCCCAACATTCCGAAGTCAATACGTGCATACAATCCATTGAGTCGGGTATACCGGAATACCTGACTCAATTGCAAGAAATTTTCAAGAACGAAGGTAGGGTGTCCGTCAGGAGCGAAAAGTCCGGGACACCCGCCGAAAAAAGGTTGTCGAGTCTCTGGAGAAATGTTACATGTGCTATTATGATAAGCCTGCTGTGGTCGTCCAAACAGAGGAGCGGCGCTGTCGTTAACATGACAATTGGTGAGTGGGAAAACAGGAAGCACCACCTGGACAGCGCCGTGGTGACGGTGAGGGACCGCAAGACGGGTGACAAAGAGCCCGCCTCCATTGTTATTGATGATGAAATGGAGAGGCACATGACGATATACTATGACTTACGTACGAGGACCGGATACGAGAGAACGAACTTTTTTGTGACTAACCGAGGAGAGATAGTTAAAAAACTTTATGACGACGTAAATAAGACTTTTGGATCAAACCTCTCCTCCAGGACGTTTCGTATAATGACAGAGACGGAAGGCCGTAGACACGACGCTGCAACGTCATCGATGGTCGCGAAGGCGTTGCAGCACTCGGAGGTCACGGCCTTGAAACATTACCGGGTCACGGACACAGACGAGGCCATAAGGCGACAAGCCAACTTGGACAAGGTGACACATACGGCACTGGTGAAGTTCTACATTGACAATCAGTAG
- Protein Sequence
- MELALNAITAGSYSISQAAVEFNVPETTLRSIKPKAAVRSYVRTKDNVALKRGVALVIESGYSVNEASRVVKVPRTTLRKELEIVRKDRASDVPVPVSSSIVDNEFGYGEPRVVLQPRSVMISAAVGATSEPATASALEPVGSSPLRSTAGITTPERQCDVQRPAVAESAAEGATSEPATASAMGPVGSAPLRPSVTRGTSALRFRMQNKIIFEGDGAKTVPTMCVLTDRSAYNRPPPPVPTNLTLSPQQSLAIPPAATIEKSVSKFENGKMRKVFVKGLAHKRSAYFPRQRNTSASKGGESEYVPLTTPEGDETLMVKAVGDQPRGHNIYTTPSPIKDSVYDFVESERSRSRSPIKSPPTYAIGSPVAGPSWRSPVRLTGIPDGMAKSPIVMSPTPSRPVSESSPLRIDNEWVDTDESDEGFRPRRRTVAEKQQVADDTQSRKSYTLVSMSAIENKLGPYWVDPSFRSIAHGLTVMGRMKVYGGHWNLPGVKDLPNPFSRYLRNGDEAIPNPAYIATKAVQEPAQPAREVTPPHQTVADTSSQNVRTSTKHQGLNKRLPDHHPLIAMFRKTLKIIHGGESNAANNYVGNVSRILYFIHNELVGMNTLPKHWADLVSADISHYERFIELRENLGQTKSKTINYLKDLRKLFQYILDNYIHTDTTFPKGFDLMPCEATVTKIKILASNLTLIYQRKTKQQPGELFVRKTMEAEELPQHSEVNTCIQSIESGIPEYLTQLQEIFKNEGRVSVRSEKSGTPAEKRLSSLWRNVTCAIMISLLWSSKQRSGAVVNMTIGEWENRKHHLDSAVVTVRDRKTGDKEPASIVIDDEMERHMTIYYDLRTRTGYERTNFFVTNRGEIVKKLYDDVNKTFGSNLSSRTFRIMTETEGRRHDAATSSMVAKALQHSEVTALKHYRVTDTDEAIRRQANLDKVTHTALVKFYIDNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -