Basic Information

Insect: Sisyra terminalis
Gene Symbol: ush
Assembly: GCA_958496175.1
Location: OY292278.1:32702348-32724114[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 0.76 10.6 0.1 1 20 215 234 215 236 0.92

2 9 0.00026 0.017 15.7 2.2 1 23 281 303 281 303 0.98

3 9 0.022 1.5 9.7 0.8 3 20 335 352 334 354 0.93

4 9 0.096 6.3 7.7 4.4 2 21 655 674 654 675 0.94

5 9 0.0057 0.37 11.5 0.0 3 20 716 733 714 735 0.91

6 9 0.33 22 6.0 0.1 2 23 779 800 778 800 0.96

7 9 0.0096 0.63 10.8 1.3 1 23 806 828 806 828 0.99

8 9 0.51 34 5.4 2.4 1 23 891 914 891 914 0.94

9 9 0.022 1.4 9.7 0.9 2 21 1025 1044 1024 1045 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	0.76	10.6	0.1	1	20	215	234	215	236	0.92
2	9	0.00026	0.017	15.7	2.2	1	23	281	303	281	303	0.98
3	9	0.022	1.5	9.7	0.8	3	20	335	352	334	354	0.93
4	9	0.096	6.3	7.7	4.4	2	21	655	674	654	675	0.94
5	9	0.0057	0.37	11.5	0.0	3	20	716	733	714	735	0.91
6	9	0.33	22	6.0	0.1	2	23	779	800	778	800	0.96
7	9	0.0096	0.63	10.8	1.3	1	23	806	828	806	828	0.99
8	9	0.51	34	5.4	2.4	1	23	891	914	891	914	0.94
9	9	0.022	1.4	9.7	0.9	2	21	1025	1044	1024	1045	0.93

Sequence Information

Coding Sequence: ATGTTCGATGCATTTTATCTTCGTCGGGGCCTTCTGACTGAATCTCGTCCGGGTCATGTAACCGATCTAACCCACCCGGTCGCTATGCCACATATAGGATATACGTATCCAGAGAAAACCACCCTCTACTCGCCGAATGGTGGTGCTACCTCTACTGCTCGAGGTGAAGATGAAGAATGGACTAGTGATACCGAACGTACAATGCCAGAAGTAAAACCAGCGTCCGAAGAAAAATCGCCAGCTGCAGAATCTGAGTCGAACTCGAGTCCTCCGCCGACTGTAGCGACATCAGAAGCTCTTTCTCCGGTTACATCTGAATCGGTAGTTACCACACCTCGCCTAAGACTTAACACAAGCTTAGCGACAGATCCAGCATTGCGACCGCAAGCTACGGCTATCGTACCCGCTAATCTTTCGGATTCATCAGAGGCTACTGTTACTAAAGTTCCCACAACAACCGCTGATTACATTGAATCTTTACCACCGGCTTTTCAAGAAGCTTTGGCCGCAGGAAGATTTTTTGGTCTTCCGCCACTCGGTTTTATCGACACCACAGTCACACCAAGTATTCCTGCAGTTGCTGCAAAACTTCCAACAGAGTCTCAAGAAACTACTTCACCGCGAGTTCTTACAACTCCGCTGTATGTTTGTATGCCGTGCGGAATTAAATTTTCCTCTTTAAGCACTTTAGAAGCGCATCAAACTTACTATTGCTCTCACCGAAAAAATGGAAGTGATGCAGAAGAAGCCAAATCCATTGTTAGTGGAGCCGATTCAAGTGTTGAGCCAAATGATGATTCTTGTGAAAATCCTGCAAAAGCTCAACGAACAGGAAAACAATATGCTTGCACTCATTGTTCCTACAGTGCCGATAAAAAAGTTAGTCTCAATCGACACATGCGAATGCATTCCGTGTCTCCGACTATTCCACCGGCTGCACCACCCCCAATTACTAACGGTGATGCTACCAGCGATGCAACCTTAACAAGTCAAGATCGATATTGTGCTGATTGTGATATTCGGTTTAGTTCTCTAAAAACATTTCGTGCTCATAAACTCCACTATTGCAGCACACGCCATATTGCTAAAGCCAGTGGAACTTCATCAACTGCTCATTCAGCTACTCAATCAAAAACTAGTTCTTCCACAACCTCAGATTCCGCACCCACATCACCAAACGACGGAAACTCGTGCAGAACTCCTCCATCTCCTACCCAAATGAATGGTGCAAATTCCCAACAATTTTTAGCCCTACCAACAAACCCAATTTTAATCGTTCCATATTCCCTCTTCCGCAGTGCAAGTGTTCTAGCCGGTCCCTCAGTTGCGGGAATTCCGTCATCCGATTCACCCTGTTTCCTACTTCCAAATGGCGTTATTCAACCTGTATCGCAATCTCTAACTACCAATACCTCCAAAACCACTACTCGATCAAGCGCTGAGGTTCTAAAAGCGGCAAACAAGCTTCGTGAAAATAACATATCGAAAGAATCAAGCGCTCCACTAGATTTAAGCGTTCGGCGAACGCCAGAAATGAAAGACTTAATAATTGAACTCGGCGACGACTACGAAAAAGAGAACCACAACCAACAAATCCCAACTCCAGAACAAATCATTTGCGCTCCGTCTCTACCTGGTTCGCCACCTCTTACGCCTTCACCCCGACGATCTCCTTCAGATTATTCATCCCCGAAAAGAAAAATCGAAGAGTCTCGAAGTAATAGTCCGAAATACGCTAGAACAACCCCAAAATCAACCGTatccgaaaccgaaagttctcACAATGAAAAGAATAATACTCTGAATATACTTCCAACATTGGCCAATACATCGGGCTTCTCCTATTCAGGACTTCATCCACTGTTGCTTCAACAGATGGCTCCGGAATTGGCGTTACGTTTGGCCGAACTTCCAATACCGCCAATAGCATCTCCGCAGGTTTTAGTCAAACAAGGAGTCTCGAAATGTAAAGAGTGCAATATCGTGTTTTGTAAACATGAAAATTATGTGGCacacaaaaaacattattgttcAGCACGACAAGACGACGAAAGCTCGActtcgaaaaattcaaatagtcCACCTGTGAGTCCAGTTCCAACCACAGATAAAGTAAGTCCTACAGGACAGTATCAACAGCTTATCTGTGTAGCGTGTGGAATTAAGTTTACGTCGTTAGATAATTTAAATGCTCATCAAACGTATTATTGCTTGAATCGTAATGAACTCCATACTAAAGTAACCGAAACTGATGTACGACGATGTTTAAAATGTAAAGCCATTTCGGAACCAGGACATCAATGTGTTATTGCGATTCCTTTATCAGGAGGCTGGAAATGTCCATGTTGTGATGTGGTCAGTGCTACAGCAAGTGCTGCTCAACGCCACATTGAATCACACAGTGGAGTCAAAGCCTACAGATGCACAATTTGTCGATACAAAGGAAATACTTTACGAGGAATGAGAACTCATATACGGATGCATTTCGAAAAGCGAACCGTCGATTTGcaggaGGAGAAATACATTACCTGTATTCTCGAAGAAGATATGCCAAGAAATTTAGCCATGAACAACACTTCAATGCCGGCGACATTAACATCACCTTCTGTGGATATAACCGAACGCCAATCGCCTGCTGTTTCTGAATCATCCAAAACTGACGATCAACGTCACTACTGCGATTTGTGTAGTTATAGTTCAACATTTCGTGGAAATGTCCTTCGTCATTTCAAACTTATCCACAGCGGATCTGAAAAATCAGTGCCGAAAGTCGCAACTGGAGAAGGCGATGAATCGTTAATCAGCAACGGTCCCTCTTCGGCTACATCAAAATCGATGCCCCTACTTGACGAGGAGGAAGTTCacgtaaaaaaagaaaaacttgaaTCGGCGAATAGCGTACACAGCGATTCTAATCCTCCATCTAATGCATCTCAATCGGGCGAAACCACAACTACGTCTGCGAGCAAAAAGACTTCTACTCCGGACATTGTtgtgaaaaatgaaacaaaCTCAAACAGTGATGGCATTGATTCAGAGTTAATCCAAGAGGCTGTTAAACTAGGACCTAAATATTGTAAATCTTGTGACATATCTTTTAGTTATTACTCTACTTTTATTGCACATAAAAAATTCTATTGTTCGAGTCATGCGGGTGAAATTACATCTGCCggaaataataataacacaGCCAATAATCGGACGGCAAAAGCCTCCGTGTTATAG
Protein Sequence: MFDAFYLRRGLLTESRPGHVTDLTHPVAMPHIGYTYPEKTTLYSPNGGATSTARGEDEEWTSDTERTMPEVKPASEEKSPAAESESNSSPPPTVATSEALSPVTSESVVTTPRLRLNTSLATDPALRPQATAIVPANLSDSSEATVTKVPTTTADYIESLPPAFQEALAAGRFFGLPPLGFIDTTVTPSIPAVAAKLPTESQETTSPRVLTTPLYVCMPCGIKFSSLSTLEAHQTYYCSHRKNGSDAEEAKSIVSGADSSVEPNDDSCENPAKAQRTGKQYACTHCSYSADKKVSLNRHMRMHSVSPTIPPAAPPPITNGDATSDATLTSQDRYCADCDIRFSSLKTFRAHKLHYCSTRHIAKASGTSSTAHSATQSKTSSSTTSDSAPTSPNDGNSCRTPPSPTQMNGANSQQFLALPTNPILIVPYSLFRSASVLAGPSVAGIPSSDSPCFLLPNGVIQPVSQSLTTNTSKTTTRSSAEVLKAANKLRENNISKESSAPLDLSVRRTPEMKDLIIELGDDYEKENHNQQIPTPEQIICAPSLPGSPPLTPSPRRSPSDYSSPKRKIEESRSNSPKYARTTPKSTVSETESSHNEKNNTLNILPTLANTSGFSYSGLHPLLLQQMAPELALRLAELPIPPIASPQVLVKQGVSKCKECNIVFCKHENYVAHKKHYCSARQDDESSTSKNSNSPPVSPVPTTDKVSPTGQYQQLICVACGIKFTSLDNLNAHQTYYCLNRNELHTKVTETDVRRCLKCKAISEPGHQCVIAIPLSGGWKCPCCDVVSATASAAQRHIESHSGVKAYRCTICRYKGNTLRGMRTHIRMHFEKRTVDLQEEKYITCILEEDMPRNLAMNNTSMPATLTSPSVDITERQSPAVSESSKTDDQRHYCDLCSYSSTFRGNVLRHFKLIHSGSEKSVPKVATGEGDESLISNGPSSATSKSMPLLDEEEVHVKKEKLESANSVHSDSNPPSNASQSGETTTTSASKKTSTPDIVVKNETNSNSDGIDSELIQEAVKLGPKYCKSCDISFSYYSTFIAHKKFYCSSHAGEITSAGNNNNTANNRTAKASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349203;
90% Identity: iTF_01349203;
80% Identity: -