Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292279.1:42541340-42545803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.47 31 5.5 0.3 1 14 143 156 143 163 0.91

2 9 9.4e-06 0.00062 20.3 1.2 1 23 176 198 176 198 0.98

3 9 7.6e-05 0.005 17.4 0.4 1 23 286 309 286 309 0.94

4 9 0.035 2.3 9.0 6.4 1 20 319 338 319 341 0.93

5 9 8.9e-05 0.0059 17.2 0.6 1 23 347 369 347 369 0.99

6 9 5.8e-05 0.0038 17.8 4.4 1 23 375 397 375 397 0.98

7 9 0.04 2.6 8.8 0.2 3 23 402 423 401 423 0.94

8 9 0.003 0.2 12.4 2.3 1 23 432 454 432 454 0.98

9 9 5.7 3.7e+02 2.1 0.0 1 11 460 470 460 475 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.47	31	5.5	0.3	1	14	143	156	143	163	0.91
2	9	9.4e-06	0.00062	20.3	1.2	1	23	176	198	176	198	0.98
3	9	7.6e-05	0.005	17.4	0.4	1	23	286	309	286	309	0.94
4	9	0.035	2.3	9.0	6.4	1	20	319	338	319	341	0.93
5	9	8.9e-05	0.0059	17.2	0.6	1	23	347	369	347	369	0.99
6	9	5.8e-05	0.0038	17.8	4.4	1	23	375	397	375	397	0.98
7	9	0.04	2.6	8.8	0.2	3	23	402	423	401	423	0.94
8	9	0.003	0.2	12.4	2.3	1	23	432	454	432	454	0.98
9	9	5.7	3.7e+02	2.1	0.0	1	11	460	470	460	475	0.81

Sequence Information

Coding Sequence: ATGTCGCAAACAGCAGATTGTGATGGATGTGTTATTTGTAACGGGAAATATGAAGTCCTAATTCCTGTCGAAGAAAAAGTCACCAAGTGCAATGGACTTACGGTGGCCGAAGCTCTCGAACATCTCCAATTCTTTTCgGTTTCATTCGATGGTGTAAAAACAATGTTAAATGTGTGCTTGGGATGTATATCGAAAATCCAATATTGTTTTGCATTTAAGTCATTGTGCAGTCAAAGCGAAAAAGCATTAAAACAAAAACTCCAATGTAAAATTCAAGGAACCATTTCTTTAGTATCCTTAATTCCCAAACACGAGGAAAGTCTTCTCGAACATTCTTACAGCAAGGAAATCGCTGAGAATGTAAATACCGAAGATACAGCCGAAGATGATAACAAGACGcttgatcaaaatttaaattcagaaatatttgtttgttcAATATGCTTAAAGGAATTTAATGATCGTACGTCTGTAGATTTTCATTTTGCCTCAGAACATGACATAGAAACAGCAGAGGGCTTAAAATACAAGTGTAAAGTTTGTTATAAACCATTTTTCAACGCATCTAGTTTACGTAACCACGAAATAACTCACAAAGAGGAAGATGAAAGCAATTTAGCCGTGGCTACAATAACCGAAGAGGAAGTTTTAAATGCAGATGATTTAGATGAAAATATAGAAATGGAGGAAATTTATTTGGAAGAGGATGTTGAAGAAACACCTgttgaaaatgaattttctgtaaatattgAGGATGCTGAAAATACACATGAAGTTCAAGTTCTTTTAAGTGAAGAAGGCACACCTGCTACAGATGAAGAAGATTCTCCCAAAAACATGAAGAGTgaacaaatatttgtttgtaGAATTTGTAACATGGAATTTAACTATCGAGCTTCGCTAAACAAGCATATGGCTGGAAAGCATTATGAAGAAACACAAGAAACTTTAAGACACAAATGTAGATATTGtggcaaaaaatttttctatGCTAGTCGATTACGGGAACACGAAAATTGTCATACAGATGAATTCCGTTATCAGTGTTCCCTGTGCGAAAGCGCTTTTAGATATGAGGCAACATTGCGGAAACACATCCAATCGCATACATCTGGAAACCAACATGTGTGTAAGATATGCAataaaacCTTCCTATATCAGACGTACTTAAAGAAGCATATGTTGACACATCGAGATCGACTTTGCAGATATTGTAATGCGATTTTCCCCAACAAAATGGTTCTGATGAAACATCTACTTGCAAATCATCCAGAGTATAGTGGCGAGAAAACATACTCGTGCACGGCATGTGAAAAGAATTTTCTGCATAAAATATCTTTGGCAAAGCATTTGCGAACGCATAACGGCGATAGACCATTTGTTTGTAgtgtttgtagtaaGCCTGTCCAGGACTGGGGCCTTGTCCTTTGGGGACGGAAGTATACAGGATATTTTTGTAGAAGGCTTGAACACCACCCTGGAATTATATTTCCTAAGCACCCTTCCAATACGGTCAGATACACCTCGAAGATACGGGAGAGACCCGAGACGATCCAAATTCTCAACTTCGTTCGGAGGTCGCGAGCCATTTCGTGCTTTCAACCAATTAACGACCAAACCACTCCAAAAACTGGTTGGTCTCAGTCAAACTCATATAGCGAATTCCAGGGATTTCGTGGACAGATTAGCAACCATCAGGGTTGGTCCAGATGA
Protein Sequence: MSQTADCDGCVICNGKYEVLIPVEEKVTKCNGLTVAEALEHLQFFSVSFDGVKTMLNVCLGCISKIQYCFAFKSLCSQSEKALKQKLQCKIQGTISLVSLIPKHEESLLEHSYSKEIAENVNTEDTAEDDNKTLDQNLNSEIFVCSICLKEFNDRTSVDFHFASEHDIETAEGLKYKCKVCYKPFFNASSLRNHEITHKEEDESNLAVATITEEEVLNADDLDENIEMEEIYLEEDVEETPVENEFSVNIEDAENTHEVQVLLSEEGTPATDEEDSPKNMKSEQIFVCRICNMEFNYRASLNKHMAGKHYEETQETLRHKCRYCGKKFFYASRLREHENCHTDEFRYQCSLCESAFRYEATLRKHIQSHTSGNQHVCKICNKTFLYQTYLKKHMLTHRDRLCRYCNAIFPNKMVLMKHLLANHPEYSGEKTYSCTACEKNFLHKISLAKHLRTHNGDRPFVCSVCSKPVQDWGLVLWGRKYTGYFCRRLEHHPGIIFPKHPSNTVRYTSKIRERPETIQILNFVRRSRAISCFQPINDQTTPKTGWSQSNSYSEFQGFRGQISNHQGWSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -