Ster018128.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- L
- Assembly
- GCA_958496175.1
- Location
- OY292280.1:1068452-1078793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.3e-05 0.0028 18.2 1.2 1 23 78 100 78 100 0.98 2 22 0.17 11 6.9 5.6 1 23 106 128 106 128 0.98 3 22 0.00012 0.0082 16.7 3.1 1 23 134 156 134 156 0.98 4 22 0.00011 0.007 17.0 0.2 1 23 162 184 162 184 0.98 5 22 0.00067 0.044 14.4 0.4 1 23 265 290 265 290 0.95 6 22 1.7 1.1e+02 3.8 0.8 1 23 335 359 335 359 0.85 7 22 0.072 4.7 8.0 0.8 2 23 396 418 395 418 0.91 8 22 0.16 10 7.0 0.5 3 19 426 442 424 447 0.91 9 22 0.019 1.2 9.9 0.3 2 23 513 534 512 534 0.96 10 22 0.001 0.069 13.8 1.2 2 23 572 593 571 593 0.95 11 22 0.00046 0.03 14.9 1.8 1 23 601 624 601 624 0.91 12 22 0.059 3.9 8.3 0.6 1 23 629 652 629 652 0.92 13 22 3 2e+02 3.0 0.2 1 23 700 722 700 722 0.94 14 22 0.00066 0.044 14.5 0.3 1 23 726 749 726 749 0.95 15 22 0.0016 0.1 13.3 4.4 2 23 837 858 836 858 0.96 16 22 0.01 0.68 10.7 0.6 1 23 868 890 868 890 0.98 17 22 1.8 1.2e+02 3.6 1.3 2 23 898 919 897 919 0.95 18 22 0.14 9.1 7.2 3.4 1 23 1023 1045 1023 1045 0.95 19 22 0.57 38 5.2 1.4 1 23 1053 1075 1053 1075 0.96 20 22 0.023 1.5 9.6 0.4 1 23 1083 1105 1083 1105 0.97 21 22 0.7 46 4.9 1.1 1 23 1112 1134 1112 1134 0.91 22 22 0.0011 0.071 13.8 0.1 1 23 1158 1180 1158 1180 0.97
Sequence Information
- Coding Sequence
- ATGATCACGTGCAAAAACAAAGGGTTGCGTTTAGAAGAAGTCATTGGAAAAATTCATCAACGATCTTTCAAAGATTCGATGGGTACCGAACCTGGTGGAAGTTGGCACAGTGATTTGCCGGACGAACCTAGAACGCCGCCGACACCGATGTCGTGTCCAACACCCAACTCCAGCACCGATTTACCGGACGCTGATCTTTCATTTACGATTGGAGTCACCGAAGCAACACCGTACGCCTGCCAATTTTGCAACAAAGCCTACCCACGATTAAGCTACCTCAAGAAACACGAACAGACGCATAGTGATCAGATGCCATTCCAATGTGATTTTTGTTCGAGGTTGTTTAAACATAAACGGTCACGAGATCGTCACATTAAACTCCACACAGGTGATAAGAAGTACCGCTGTATCCATTGTGAAGCAGCGTTTTCCCGCAGTGACCACCTGAAAATCCATTTACGAACCCACGACAACGGAAAGCCATTCCAATGCATGGTATGCAACCGGGGTTACAATACAGCAGCAGCATTAACTTCACATATGCAAAACCACAAAAGACAGCAACGGCAATTAATCGATAGCACTGCCGTGAAATCTCCCAAAGAGAACCGGAATCCCGTAGAACCGGAAGGTTCTCCAACGGATGCTAGGCCGGATCACGTGGGTGTCACGAATGGATCTACTTTAGAAGTAGCAACTTCGAACACCTTTAGTAGCTTAACGACATCAAACGTGCCTCAGCATCCGAACCGTGCTGATTCAAACCCACCAGTGCCTTCCCTAATTACGCTTTACCGATGCACGCAAACTCAATGTGGAAAAATCTTTCATACCGCAGTGGAACTAGAGAATCATCAAGTGATTGTCCATAATGTGGAAAATGCCGTCCATTCGAATAAATCTCGTCTTCGAAAACATGTTGAAAAATCGTCGATTGATTCCGAAAACAATTCGGATAGTAGCCAAACTAGAGTTGATACCAATTCAATGTTTAGCTCTAAATATGTTTGTATGTACTGCACTGAGGATAGTTTTACTAAAATGGACGACTTAAAGCAGCATATCCATGCTGTACACCAATCGATCCTAAACGGAGATATGCGAATATCTCCATCAACCCCAAAAAACGTATCTCCTTTCTATCCCCCATTGTTGTCACCCTCCGTGGATACCTCAACATTCCTACAATGTAGCCTGTGTACAATGCGCTTCCCCAATATCTCAACCCTACATTTACACGTTTACAACGTACATCGGTATTCCGGAGTTCAAATATGCCCCTACTGTGCACTTTCATTCGAAAGCTACGACCTACTAACTGAACATTGTCTACAAATGCATcgaactaatttatttttaccagAACAAATTAAACCAACGGATCTGAGCAAGAAGACGAAAAGTTTAGAACGTGAGGATACGCCCagtaaaaaacaaaagaagGATCTAGCGTTTGTTCATCCTGGAGATAGTGCAACGCCAGCATCCACCTCGTCATCGTCAACCCCAAACCAATACGAATGTCCCGGTACTCTAATGTGCAATCAATGTGATGCGGCCTTTCCCGAGTTCGAATCGTTCCGAACTCATCTTAAACTTCACTTGCAACAAGCCGATTCCCTACGCAATTTGATGGAACGACCTTCCAGTGCTTCCCTCGATGCAACCGGGACCAGTCTAATGCAGgagattttaaaaaatgctGCTTTGCTCACCTGTCCGCATTGCTCACAAACGTTTAAGGACGTCCTAAGTCTGGAACGCCACGTGTACTCCCACTTCCTGGTTCCTGTTTCAGAGTACCTATGTCGCCACTGCAATAAATCTTATATGAATCCTGAAGAACTTCAAAAGCATCTCTTGGATTTCCACACTCAACACATTTACCGCTGTACGTTATGTCGCGAAATGTTCGACTCGAAAGTTTCGATACAAATGCATTTCGCTGTTAAACATAGCAATGAGTGCCAAATGTTTCGGTGTGCAATATGTCCAAACGATTCCCGCTCACTATTCCGAAACGACAAATCCGGAAAGCTTCATATCCGAAACTCGCACGATTTGAATCTCCTTATGCCGGGAGTCAGTGTAAAACCCTTTCGATGTAGTTTCTGCAACGTCGAAATGGACAACGAACTCGACTTGCAACTGCACTTAACTGTCCACTTTCATCCATTTAAGTGTAAAATATGCCAACGGGGATTTCCGGTTGAGTATCTTCTAGAACTGCATATGACCGAATACCATGCTAACTCAACGaTTAAAAATGGATCGGGTGATAGTACCAATGGGGACCACTCCAGAAAAATTGATGATCTCCAACTATCGATTTTACGCTCAACAAAACTTCACTCGACTGATACCAATAGTGAAATGGAGAGTGATTTTAAGATTCGGATGTGTGATATGTGCGATAGAAATGATTTTATCAGCGAAGCAGAATTAGTTTCGCATCGAAAGTTGGTTCATCACTTGAAACCGGCGTCGAAAAATGGAGTTGTGAGTCTTCACTGTGCCTACTGTAATGAAAACTGTAAATCGCGCTCTGAGCTTGAAAACCATATGAAGCAACATTCCCAAAGTAGTGGAGTATCCGGAAAGCATAAGTGTAATATTTGTGATGAATTATGTCCATCGGCAGCATTGTTAGCTGAACATAAATTGACGCACTGTAAGGTGCTTACCGGTAGTTCTTGTACGCATTGCAAAGCGACTATAGTAACTGATGAACAGTTTTTCTCGCATTTGATTCAACATAATAATATTAGTAGCAATAGTTCTAGCTCCCAAATTTCCCTACCGACACCGTGTGTCATTTGTCGGCAAACCCTCATTTCGAACATTGAAGTCCGAATCCACTCCCAGTTCCACCTCAGAAACAATCAAAGTACCAATGAGTACCAGTGCGTTTTGTGCTTAAAATCAGTCGAGAAACCCAACATAGTTCCAACCAACGGTGGAATGAATTCCCATATTTGTAAGGACTGTTACTCAACACATAGTTTTTCCGTACAGTTGGATAATGGAACAAAACTCGAACGGAAAACTCCTGacgattcaaaaaaattctccTGCATCAAATGCCACTTAAATTTCAGTTCCGAACATGAAATCCAAACACACATGGCCACGCATGTACTCTCGGAAAACTCGCAGTTTGAGTGCCACTTGTGTCGAAGTAAATTAACTTCTTCCCTCAAACTTCAAATCCATTTAATCGAGCATACTTTCGCGGGATTTGGCAGCTACACGTGCTACTTATGTTCAGCTGTTTTCACGGCTGCGCAAGGCCTACACTCGCACATGCTCGAGCATGGATTGGCAGCTCGGCCATACGACTGTCCTCGATGTAGTCTACGTTTCTTCTTTCGAGCAGAACTTGACAATCACAGCTACCAGCACCTGCACGAACAGGATTGCGTCTTACAGCTCAGTTCTACATCCACTGAACAAATCGCCAAATCACAAAACTTCAACTGTAATGAGTGCGGATTGGAGTTTGAAGATGTCACTAGTTTAGTGAGTCACGTCAAAGTTCACAACAACAACAATCATCGCAACAACGAAGACTTCATTAATGGAGCTGAAAGGAAAAATAAGGCAACCACTTCAATGTGCGACGAAAATGAATATATAGAAGTGGAAAAATTATCTTCGCAAAAAATTCAAGCGTCAAAACACGTGAACAACGAAAACTGA
- Protein Sequence
- MITCKNKGLRLEEVIGKIHQRSFKDSMGTEPGGSWHSDLPDEPRTPPTPMSCPTPNSSTDLPDADLSFTIGVTEATPYACQFCNKAYPRLSYLKKHEQTHSDQMPFQCDFCSRLFKHKRSRDRHIKLHTGDKKYRCIHCEAAFSRSDHLKIHLRTHDNGKPFQCMVCNRGYNTAAALTSHMQNHKRQQRQLIDSTAVKSPKENRNPVEPEGSPTDARPDHVGVTNGSTLEVATSNTFSSLTTSNVPQHPNRADSNPPVPSLITLYRCTQTQCGKIFHTAVELENHQVIVHNVENAVHSNKSRLRKHVEKSSIDSENNSDSSQTRVDTNSMFSSKYVCMYCTEDSFTKMDDLKQHIHAVHQSILNGDMRISPSTPKNVSPFYPPLLSPSVDTSTFLQCSLCTMRFPNISTLHLHVYNVHRYSGVQICPYCALSFESYDLLTEHCLQMHRTNLFLPEQIKPTDLSKKTKSLEREDTPSKKQKKDLAFVHPGDSATPASTSSSSTPNQYECPGTLMCNQCDAAFPEFESFRTHLKLHLQQADSLRNLMERPSSASLDATGTSLMQEILKNAALLTCPHCSQTFKDVLSLERHVYSHFLVPVSEYLCRHCNKSYMNPEELQKHLLDFHTQHIYRCTLCREMFDSKVSIQMHFAVKHSNECQMFRCAICPNDSRSLFRNDKSGKLHIRNSHDLNLLMPGVSVKPFRCSFCNVEMDNELDLQLHLTVHFHPFKCKICQRGFPVEYLLELHMTEYHANSTIKNGSGDSTNGDHSRKIDDLQLSILRSTKLHSTDTNSEMESDFKIRMCDMCDRNDFISEAELVSHRKLVHHLKPASKNGVVSLHCAYCNENCKSRSELENHMKQHSQSSGVSGKHKCNICDELCPSAALLAEHKLTHCKVLTGSSCTHCKATIVTDEQFFSHLIQHNNISSNSSSSQISLPTPCVICRQTLISNIEVRIHSQFHLRNNQSTNEYQCVLCLKSVEKPNIVPTNGGMNSHICKDCYSTHSFSVQLDNGTKLERKTPDDSKKFSCIKCHLNFSSEHEIQTHMATHVLSENSQFECHLCRSKLTSSLKLQIHLIEHTFAGFGSYTCYLCSAVFTAAQGLHSHMLEHGLAARPYDCPRCSLRFFFRAELDNHSYQHLHEQDCVLQLSSTSTEQIAKSQNFNCNECGLEFEDVTSLVSHVKVHNNNNHRNNEDFINGAERKNKATTSMCDENEYIEVEKLSSQKIQASKHVNNEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349089;
- 90% Identity
- -
- 80% Identity
- -