Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292274.1:67631232-67642592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.1e-07 3.3e-05 24.3 2.1 2 23 696 717 695 717 0.97

2 9 4.9e-05 0.0032 18.0 2.9 3 23 725 745 723 745 0.95

3 9 2e-06 0.00013 22.4 0.1 1 23 751 773 751 773 0.98

4 9 5.3e-05 0.0035 17.9 2.7 1 23 779 801 779 801 0.99

5 9 6.5e-05 0.0043 17.6 5.3 1 23 808 830 808 830 0.98

6 9 2.7e-07 1.8e-05 25.1 3.2 1 23 836 858 836 858 0.98

7 9 0.00043 0.028 15.0 0.7 1 23 864 886 864 886 0.98

8 9 6.1e-05 0.004 17.7 3.2 1 23 892 915 892 915 0.97

9 9 2.1 1.4e+02 3.4 0.8 2 20 922 940 921 945 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.1e-07	3.3e-05	24.3	2.1	2	23	696	717	695	717	0.97
2	9	4.9e-05	0.0032	18.0	2.9	3	23	725	745	723	745	0.95
3	9	2e-06	0.00013	22.4	0.1	1	23	751	773	751	773	0.98
4	9	5.3e-05	0.0035	17.9	2.7	1	23	779	801	779	801	0.99
5	9	6.5e-05	0.0043	17.6	5.3	1	23	808	830	808	830	0.98
6	9	2.7e-07	1.8e-05	25.1	3.2	1	23	836	858	836	858	0.98
7	9	0.00043	0.028	15.0	0.7	1	23	864	886	864	886	0.98
8	9	6.1e-05	0.004	17.7	3.2	1	23	892	915	892	915	0.97
9	9	2.1	1.4e+02	3.4	0.8	2	20	922	940	921	945	0.88

Sequence Information

Coding Sequence: ATGGATGTGAAAATTAAGCCCGACTTATGTCGTGTGTGCCTCTCCAATCAAGATTTGTTgccaattttcaatgatttcaaCGATTTGtccaaatgtaataaaattgttGCATGTGCTGCTGTCCATGTGGAGGACAATGATCCATTGCCGGCCTTTATCTGTCGATTGTGCAACCAAGTGCTGGAGTTGGCgtatattttcaaaacaaaatgcGAGGACACGGACCGAGAACTTCGTCAACTTGTCGAAGTTGGCATCCAACGGAAAAACAGCTTGAATACGCCGTCATCTGTGCATATAGAAGTAGCAAATTGTGAACCGATTTTCAGTAATATACAAATCAATATTGTAAATCATCAACCGTATTATCCTTCTGGAGAAGCTTCGGTGGAGTCTATTGAGGCTTTGCCGAACGAAGAGCCAACCCTTTACCAATCAGTACCAGAAGAAAATGAAAtagtacaATTAGAAAAAGAGTCGCTTAGTATTCCGCAATCGATAGACGAGGAAATTTTAAACGTTCTAACCGAAACTGGTTCATTAAAATCGGTGCCATCTAGCCGATCAgaaaataatgaaccctatccTTTGGAAGTAATCTCTCCGACGGAGGCCGTCAAAACTTATCTCCACTTTCCTTCGAATAAATCTGACgcaaaaaaccataaaaatgcCAGCAATGATATGTATTACAATGACGACATAGAACTGGGCGAAGAGTGTGAGGTGATCACCGATGGAGTTGcatctttggaaaaaaatgaaaaagaacaGACCACAACGCCCAGAGGGCGTTTTGTGGTAATCAAATCCATTGTGAAACCGGAAAACATTCGCTATGTGCCCttggaaaatattcaaaataaaaatgatttgattCCGATACGACCGAGTGATAATACACTGCGGAAAGTTTACGAAATTGACGATGAGGGTACGTTTAAAAACGACGTTCCCGAGCCGGCTTCATATATTGAAACGGAAACCGAAACGGAAAACGCGCACAATGAAACGTATTTCCAACCAATCGAAAATAATATCATCgaagaaaaatgtataaattttttgcCGACAAACGAGGTGGAAGTTGATGAAAAATGTGTCAGTTTTTTGCCACCGAGTGAAAATTCCGagaataaaaacattattttatacaaaacttaTATATCGAAAAAAGATGACGAAAAACCAAAGAGGGGTcgcataaaaaaaatcgataaatccAAGCCACCGCACGGTGTTTCCTATTTAAAATCCGGACGGAAAATCGTTTCCAATGTCatcaaaaaatcgaaaactttGCACGTTCCAAAAATGATCGAGGGAAATAATCAAACGAGTCGTACAAAGAAAATCATTCGACGGGCACGCGTTGAAAAAATATCCACATGGGACGAGACCAATAATTTACAAGGCGAAACAAATCGAATGCTTTCGACTAGTTTACTAAACTCGGATAAACATTATAAGCAGTTAAATAATCCACAGAAACAAGTACTGATTCAACGAATGAAATTGGAAAATCTACGCCCCACGTCGAAGAAAGATATAATTGAGCGTGGAATTCCCGATCCTTTACCACTGACAGAACTTGATAAACCACGGACGAAAAAATCGGCACAAAAACACAGCCTGTCCAACGATTTAGCTATAATCAATGGATCTAATAAAAGTATTAGTAAATTTTATCAAGATAAACAGTTACAATCGATCGATCAAGATCtcaaagtaattaataattcgTTAAATAATTTGGACAAATCAAATTCGGCGATCACTGTGCCAGCCAAAACTGGACGTCACACAGCAATCAAGTCAAAAACGCCAATGAAAAGAAATCGTGTCGAAGCCCAACCAATCGACTTTGATCTGGAATCAAGTACCAGGAAAAGTGAGCGGCAACGATCGCCCAAGAAAATTTTCCCCGAAATTGATGTTTTTGCTACGCAAAAACGAAAAGCCGATGCGCGAGTACAACGAAGTGAGGAGAGTGATGGTCAGTTGGAGGAAGATAGGAAGACGGAGGATTATGTAAAAAGCGTGTTGCTCAAGGATAAAGTTAAGTTGGACTATGGGACAGGGTTGTCGTGTAATGTTTGTAACAAATCATTTCCGTATCGGAGTCACTTGATTCGTCATGTGCGGACGCACACCGGCGTAAAGCCACACCTGTGCCAATATTGCCAGAAGACGTTCTCGTCGTTGTCGTCGTTGAATATCCACGTGAAAAACCACCTGGGGGACTTCACGTACGTGTGCGAGGTGTGTCAGAAGGGGTTCGTTCAGCCGAGTGTGTTGAAACGGCATATGTTGTCGCACACGGGCGAGCACCCGTTCCAATGTGAGATTTGTTATCGGACGTTCGTCCACGACAGTAGTTTGAAGTTGCACTTGAAAATGCATACGATCAAGGAGCCGCAACACAAGTGTGATATTTGCGAGAAGAAGTTCAAGTACTTGAGTACGTTGACCAGCCACAAGAAGACACACTCGGGAATCAAGCCGTTCACGTGTAGTGAATGTCGTAAGGCGTTCTATCGACGTAGTTTACTCAAAAGACATATGCGGTCGCACACCAACGAAAGGCCGTACAAGTGCCGGTACTGTAAGGCGCGTTTTGCCTACAGTGGCGGTTTGGCGTCCCACCAAAAACTCCACACCGGCATCAGACCGTACCGGTGTGAGCTGTGCTCGTTTTCGTTCTTCCGGAAATCGCATTTGGCCAATCACATGGATAAGATCCACAATAATGGCACGGCGATGGAATGTTGCGAATGTAATGTGAAATTTGAATCGTTACAATTGTGGCGTGATCACTGGAGTCAGTCGGATCACCCGACGGAAAACGCGCTCGACACTGACGTCTGGATAAAATGGGAGAGCGAATCGGGTTCAGTGTGGCGTCACCATTCCGAATCAACCGCTACAATATGCGGCGCTATGCGACCAGGCCAACAAGTGCTGAAATCTTCCGACGACCGCGTTTCACCCGAATCCAATCCAATCGTGAAAAATGTGATTTTCCTCAGTGATTATTGA
Protein Sequence: MDVKIKPDLCRVCLSNQDLLPIFNDFNDLSKCNKIVACAAVHVEDNDPLPAFICRLCNQVLELAYIFKTKCEDTDRELRQLVEVGIQRKNSLNTPSSVHIEVANCEPIFSNIQINIVNHQPYYPSGEASVESIEALPNEEPTLYQSVPEENEIVQLEKESLSIPQSIDEEILNVLTETGSLKSVPSSRSENNEPYPLEVISPTEAVKTYLHFPSNKSDAKNHKNASNDMYYNDDIELGEECEVITDGVASLEKNEKEQTTTPRGRFVVIKSIVKPENIRYVPLENIQNKNDLIPIRPSDNTLRKVYEIDDEGTFKNDVPEPASYIETETETENAHNETYFQPIENNIIEEKCINFLPTNEVEVDEKCVSFLPPSENSENKNIILYKTYISKKDDEKPKRGRIKKIDKSKPPHGVSYLKSGRKIVSNVIKKSKTLHVPKMIEGNNQTSRTKKIIRRARVEKISTWDETNNLQGETNRMLSTSLLNSDKHYKQLNNPQKQVLIQRMKLENLRPTSKKDIIERGIPDPLPLTELDKPRTKKSAQKHSLSNDLAIINGSNKSISKFYQDKQLQSIDQDLKVINNSLNNLDKSNSAITVPAKTGRHTAIKSKTPMKRNRVEAQPIDFDLESSTRKSERQRSPKKIFPEIDVFATQKRKADARVQRSEESDGQLEEDRKTEDYVKSVLLKDKVKLDYGTGLSCNVCNKSFPYRSHLIRHVRTHTGVKPHLCQYCQKTFSSLSSLNIHVKNHLGDFTYVCEVCQKGFVQPSVLKRHMLSHTGEHPFQCEICYRTFVHDSSLKLHLKMHTIKEPQHKCDICEKKFKYLSTLTSHKKTHSGIKPFTCSECRKAFYRRSLLKRHMRSHTNERPYKCRYCKARFAYSGGLASHQKLHTGIRPYRCELCSFSFFRKSHLANHMDKIHNNGTAMECCECNVKFESLQLWRDHWSQSDHPTENALDTDVWIKWESESGSVWRHHSESTATICGAMRPGQQVLKSSDDRVSPESNPIVKNVIFLSDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -