Ster006370.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292275.1:43703949-43709647[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7e-06 0.00046 20.7 3.2 1 23 23 45 23 45 0.97 2 16 0.0059 0.39 11.5 0.3 1 23 52 75 52 75 0.98 3 16 0.0026 0.17 12.6 0.8 1 23 78 101 78 101 0.96 4 16 0.00026 0.017 15.7 0.0 3 20 111 128 110 130 0.93 5 16 0.0099 0.65 10.8 0.6 1 23 138 160 138 160 0.97 6 16 0.13 8.8 7.2 0.1 1 23 166 188 166 188 0.97 7 16 0.00052 0.034 14.8 4.0 1 23 194 216 194 216 0.96 8 16 0.0017 0.11 13.1 2.9 1 23 222 244 222 244 0.98 9 16 0.0035 0.23 12.2 0.1 2 23 431 452 430 452 0.96 10 16 0.035 2.3 9.0 0.4 1 23 470 493 470 493 0.94 11 16 0.024 1.6 9.5 2.7 2 23 498 520 497 520 0.94 12 16 0.00048 0.032 14.9 0.1 1 21 530 550 530 551 0.94 13 16 2.8e-05 0.0019 18.8 4.2 1 23 559 581 559 581 0.98 14 16 0.033 2.2 9.1 1.1 3 23 589 609 588 609 0.97 15 16 0.00013 0.0085 16.7 1.0 1 23 615 637 615 637 0.94 16 16 0.1 6.7 7.6 6.0 3 23 645 665 643 665 0.96
Sequence Information
- Coding Sequence
- atgaagaaaaacgATATTTTAAGCAACGAAGAAACCGAAGAAACAaCTAAGAGAAAAAAAGTAACTTACTATTGCGACAAATGtgatttaacttttaaaaccaaaagtcaATTGTCGAAACATGAAAAGCAGCATAAAAACAGTTCCGGAGAATTCAAATGCCGAATTTGTGGGGCAATTTTCGAAAGTATAGAATTGAGAGAGAAGCACCGGAATACCTCCCACAAAgtGTTTCGATGTTTTATATGCAACATTAAATTTGGGGATGAGTCATCGTTTATAATACACACAGAAAAGTTTCACGATGGCCGTCATAAAGAATTCGAAATTTGTAACGATTGTGGCAGACAATATTCGACTAAAGCCCAACTTGCCGTTCATTTAGCTTCGAAATGCGGAACTCAACGAAAttttaattgtGAAGAATGTGGTGCAAAATTAATGACAGCAAACGCACTATATCACCATCAATTACGACACTCTGGAACCCGGACGTACATGTGTCGATTTTGTGCCAAGACTTTCTTAACAGGCGGTGAATTAATTGTTCACGAACGCATACACACCAACGAAAAAGCCTTCGTCTGCGAAATTTGTAACAAGGGTTTCTGCCACCGCCAAAGTTTAATCACACACTTCACAATACACACGGGAATCAAACCATTTCAGTGCGAAGGGTGCAGTCGATCGTTTTCTTGCGTTGGAAACCTACTGAAGCATCGCAAATCTCATGCCAACTCTTGCGGCAAAACTCCTCTCACCACCCACAGCGTACAACATCCCTCAACACGTGCGAAAATTCTAGCCAACACACCCAAAGGAATCAAATTACGGAAACGCAAAAGAGAAATCAATTTAACATCAGCATTAAACCAACAAGAGAAAACAGAACAAACTGAATTAGAAATTGATAGCTCGAGTTCAAGACAAACTTTATTGACAATTTCCGAAACTAATAATCCGGAACTAGATTACAATGAGATATGTGAAGTAGAGaTGACTGACGACCTTTTAAAGAAAGAAACCAATACAGATTTAAGTGGATTGAACTCTAAAGAAATAGAAATATTGaacgaaaatgaaaaatcatattGGTGTTATGAAGAAATGAATAGTACCGAGAGTGAATTCGACGATAATATTCCCATTGAAACACTTGATTCAGATCTGCTTTCGGAAAATTCTACAGATTGTCTCGCACAGTTGAATACTGGAAATGTTAAAGAGCAAGAAGATGCAAACGCGGAAAACATGCCAGAAAACAGTGATAAATCTAAAAGCAATaaTATAAAATGTCGATATTGCGGTATAGCCTATGGAAGAGTTGGTTGGTtacaaaaacatgaaaaatggCACGAAAACGGTGGCAACTcaaaaaagaataaatcaaaaactttgtcatcaaattttaaatgttcaatttgtaaattgatttttgaatcgATTGAAGAGAAAATTAAACATCAGTCCGAAAGCCACACTGATAAATTGGAATGTAAtgtttgtaaaaaagttttagCCACGCCACATAGTAAGCGAACGCACATGTTACACTATCACATGAGAGTCCCGAGGAAAATGTACACATACGTTTGCGACAAATGCGGCAAAACATTGTCATCGAAAGGTGCAATGCAAGTGCACGAAAAAAGCAATTGTGGACAAGGGAAACTATACAAATGTAACCAGTGCGAAAAAATGTTTGCGTCTAAACACAGTTTAAAAACCCACTCAAAAGTGCACGAGAACGTTAAAGCTCAACTGTGCAAATTTTGTGGTAAATCGTTTTTATGGAAAGGACAGTTAAAAATTCATGAACGGCGACACAATGGAGAAAAGCCTTATCAGTGTcagtttTGTCCTAAATCATTTGcttatcgggaaagtttgataACTCACAACAGTTTACACACCGGCGTCAAACCTCATCTATGCCACGGCTGTGGATCTCGATTTTCTTGCATCGGTAATTTAGTAAAACACCGACGAACCCACTCAACCACCTGTGGTAAAATTTTACCGGACTCCAACACCGGGTCTTGTTTCAAAGGCTTAAACATGCAAGGAGTCAAACTAAAACAAACtgtaaacattgaaaatgtaaacgaaataaaagttaaagacttgtaa
- Protein Sequence
- MKKNDILSNEETEETTKRKKVTYYCDKCDLTFKTKSQLSKHEKQHKNSSGEFKCRICGAIFESIELREKHRNTSHKVFRCFICNIKFGDESSFIIHTEKFHDGRHKEFEICNDCGRQYSTKAQLAVHLASKCGTQRNFNCEECGAKLMTANALYHHQLRHSGTRTYMCRFCAKTFLTGGELIVHERIHTNEKAFVCEICNKGFCHRQSLITHFTIHTGIKPFQCEGCSRSFSCVGNLLKHRKSHANSCGKTPLTTHSVQHPSTRAKILANTPKGIKLRKRKREINLTSALNQQEKTEQTELEIDSSSSRQTLLTISETNNPELDYNEICEVEMTDDLLKKETNTDLSGLNSKEIEILNENEKSYWCYEEMNSTESEFDDNIPIETLDSDLLSENSTDCLAQLNTGNVKEQEDANAENMPENSDKSKSNNIKCRYCGIAYGRVGWLQKHEKWHENGGNSKKNKSKTLSSNFKCSICKLIFESIEEKIKHQSESHTDKLECNVCKKVLATPHSKRTHMLHYHMRVPRKMYTYVCDKCGKTLSSKGAMQVHEKSNCGQGKLYKCNQCEKMFASKHSLKTHSKVHENVKAQLCKFCGKSFLWKGQLKIHERRHNGEKPYQCQFCPKSFAYRESLITHNSLHTGVKPHLCHGCGSRFSCIGNLVKHRRTHSTTCGKILPDSNTGSCFKGLNMQGVKLKQTVNIENVNEIKVKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -