Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292279.1:45025115-45029638[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.6e-05 0.0024 18.4 0.2 1 23 249 271 249 271 0.94

2 10 3e-05 0.002 18.7 2.8 1 23 276 298 276 298 0.98

3 10 0.0025 0.17 12.6 6.0 1 23 304 326 304 326 0.97

4 10 2.7e-06 0.00018 22.0 0.3 1 23 332 354 332 354 0.98

5 10 3.6e-05 0.0024 18.4 0.8 1 23 360 382 360 382 0.97

6 10 4.8e-06 0.00031 21.2 1.5 1 23 388 410 388 410 0.98

7 10 0.00056 0.037 14.7 1.6 1 23 416 438 416 438 0.96

8 10 2.9e-07 1.9e-05 25.0 2.2 1 23 444 466 444 466 0.97

9 10 0.14 9 7.2 0.6 8 23 496 511 491 511 0.94

10 10 0.00055 0.037 14.7 1.9 2 23 516 538 516 538 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.6e-05	0.0024	18.4	0.2	1	23	249	271	249	271	0.94
2	10	3e-05	0.002	18.7	2.8	1	23	276	298	276	298	0.98
3	10	0.0025	0.17	12.6	6.0	1	23	304	326	304	326	0.97
4	10	2.7e-06	0.00018	22.0	0.3	1	23	332	354	332	354	0.98
5	10	3.6e-05	0.0024	18.4	0.8	1	23	360	382	360	382	0.97
6	10	4.8e-06	0.00031	21.2	1.5	1	23	388	410	388	410	0.98
7	10	0.00056	0.037	14.7	1.6	1	23	416	438	416	438	0.96
8	10	2.9e-07	1.9e-05	25.0	2.2	1	23	444	466	444	466	0.97
9	10	0.14	9	7.2	0.6	8	23	496	511	491	511	0.94
10	10	0.00055	0.037	14.7	1.9	2	23	516	538	516	538	0.97

Sequence Information

Coding Sequence: ATGTTTACTTTGCTGGAAGTCCAGCGATGTTTGATTTGTTCGAAGGAAACCGACCAAATGATTCTCCTGAACCAAACCTGGAACGGATGGGAAGCTATAACTTTGGAAAATGCTTTGCAATATTTACAGTTTCCTAGTATTGCAAATATGGAAATAGATGGACATGTTTTGTGTGTGGTTTGTGTAGCAAAAGTTCAAATttgttacaaattaaaaatgaaatgttacCAAATTGAAAAAGACTTGGAAATTTCATCCGAAAGTACATCTTGTGAACGATCTATTGGTTCAACAGTGCTACCGATTAATAATGTAATACCCAGAAGTACCCACGTGGAAATCATCAAAGTAAATTCCAGTGAAAATGATAATTTAGAAGTAATTACAAAACGAGAAGATATTTTCCCACCAATGTCTTCTACAATGAATCATTCTCCCACTAATCCACAAGTTAATATTGGTAAGGGAATTGTTGGTAATATTTCCAccgaaaattataattttcaagaaGAAGACTCCCACGAAATTGCTCAAATCAAAGAAGAAATAAATGTTGAACATCTAGAAACGAATTTGGCACATTCGGAAATTAAACCACAAATGCCAGTTGTGCTAAATGATTCGGATATCAAATCAGAAATTGATATTGACTGGAAAAATATTGTCGTTAAAGATGAAACCGACTTTCAGTCGGTTGCCAGTGACGATATGAATCGAAAAGATGTAAATGTGTCAAAGGAAAACTATATTTGTCCACTTTGTGATGAAAACTTTGCCAACAATTACCAACTACGTCAACATTTCGTTATTCACAATGGAGATGTATACATTTGTAAAGATTGCAAGAAAACgtttaagaaaattgaatatttatatacacATCGAAGAGTTCATACTGGCGAAAAACCATTTGCTTGTGATGTTTGTCGTGAATCATTTCATCGACGAAGTCAATTGAGATACCATAAACACACACACACCGACGAAAATCcgtacgtttgtgatgtttgtgataaaaaatttgcaaaacaaAATGATTTGATTATTCATAAAAGAATTCATACAGGCGAAAAACCATACGCTTGTGATGTTTGTGATAAAAGATTTTATCGAACGACTCTCTTAAAAATCCACAAGGCGACGCACTTGGGCGAGAAGAAGttcgtttgtgatgtttgtaATAAGTCGTTTACTAGCGGATACAATCTAAAGTCGCATAAGTTGCGGCATACGGGTGTGGTAAcacacgtttgtgatgtttgtaataaatcattttatgGATATCCCGATTTCCGTAAACATAGAATGGCACACAATGCACGTAAGCCACAtgtgtgtgatgtttgtgATAAAGCATTTACTAGATCCAGTCATTTGATTATTCATAAAAGAATTCATACAGGCGAAAAACCctatgtttgtgatgtttgtagtaagtactGTAAATCATGTGTTGTTTTCCCTCATAATATATGCTACAACCATGAATCTTTTGTTCAATCGTCAACTTTAAAAGTACATAAACTAAAGCATACAGAGAAACCACGGTGTGAAATTTGCAatgTAACACGGTCATCTCCCGGCAATTTAAAATCACATATTAAACGATGCCACCCTAATGaagttatgaaataa
Protein Sequence: MFTLLEVQRCLICSKETDQMILLNQTWNGWEAITLENALQYLQFPSIANMEIDGHVLCVVCVAKVQICYKLKMKCYQIEKDLEISSESTSCERSIGSTVLPINNVIPRSTHVEIIKVNSSENDNLEVITKREDIFPPMSSTMNHSPTNPQVNIGKGIVGNISTENYNFQEEDSHEIAQIKEEINVEHLETNLAHSEIKPQMPVVLNDSDIKSEIDIDWKNIVVKDETDFQSVASDDMNRKDVNVSKENYICPLCDENFANNYQLRQHFVIHNGDVYICKDCKKTFKKIEYLYTHRRVHTGEKPFACDVCRESFHRRSQLRYHKHTHTDENPYVCDVCDKKFAKQNDLIIHKRIHTGEKPYACDVCDKRFYRTTLLKIHKATHLGEKKFVCDVCNKSFTSGYNLKSHKLRHTGVVTHVCDVCNKSFYGYPDFRKHRMAHNARKPHVCDVCDKAFTRSSHLIIHKRIHTGEKPYVCDVCSKYCKSCVVFPHNICYNHESFVQSSTLKVHKLKHTEKPRCEICNVTRSSPGNLKSHIKRCHPNEVMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -