Ster004082.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292275.1:5264399-5265859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00053 0.035 14.8 3.0 1 23 102 125 102 125 0.96 2 13 0.029 1.9 9.3 3.9 2 23 131 152 130 152 0.95 3 13 0.033 2.2 9.1 4.8 1 19 156 174 156 178 0.89 4 13 1e-05 0.00068 20.1 3.2 1 23 184 206 184 206 0.99 5 13 0.0013 0.086 13.5 0.6 1 23 212 235 212 235 0.93 6 13 1.4e-05 0.00089 19.8 1.2 1 23 241 263 241 263 0.98 7 13 4.8e-07 3.2e-05 24.3 0.7 1 23 269 291 269 291 0.99 8 13 1.1e-06 7.1e-05 23.2 4.8 1 23 297 319 297 319 0.98 9 13 2.1e-05 0.0014 19.2 0.2 1 23 325 347 325 347 0.98 10 13 0.019 1.3 9.9 11.0 1 23 353 375 353 375 0.96 11 13 8.7e-05 0.0058 17.2 4.0 5 23 384 402 381 402 0.96 12 13 0.00045 0.029 15.0 4.4 1 23 408 430 408 430 0.98 13 13 3.1e-05 0.0021 18.6 2.8 1 23 434 458 434 458 0.92
Sequence Information
- Coding Sequence
- atgtcttGTAATATCAATGAAGAATcatcaaatcaattaaaatctgATTTTAACAAAGCAAAATCTTATATTAAACAAGAACTGGTGGAACCAATTGATTTTCCTATTGAGATCAAGGAAGAGTTACAAATCCAGGAACCAAACGCTACCAGAAAAGGAGAATGTGGTAAAAAAACAGCGACAGTAAAAATTGAACCATCCGAAGAAACCAAGaactttgaaacaattttcGTCGACCAAAGTTTCAAGGAAGAAAATGATGAAGAAAACAACTACGAAAAAATCCGGCTAGATCAAGCGCCTTTCTCGTGCAAGTTGTGCTTTAAAGCCTTTTCAACTGAACCCAGTTTCAAAAGACATAATAGAAATCGTCATTCCAAAGTTCAAATCAAATGCAAAATTTGCGATAAGTCTTACTCTACTATAAAAGTTTGTCGCAAACATGAACGAAGACATACCACAACGTTCAAATGTGAACATTGTAAGAAAGAATTTTACGATAAAAGACTTTGGATAGATCATTGCTCGATACATACTGGCGTTAAGAATTACAAGTGTGAATTGTGTGGTAAAGCTTTTCGATTTTTATCCAATTGGCACAATCATCGACGTCAACATGCCGATGGAAATCCGTACGATTGTTTTTTGTGCGatgaaaagtttaaaactttaacTTCTTATAAAGAACATTTGTTGGCGGTTCATAAAACAATAGAGCCGTTTAGATGTGAATTTTGTGATAAGTCGTTTGAAATGAAGTCTCTATGGTTAACGCACCAAAGAATTCACACCGGTGAAAAACCTTTTAAATGCGATGACTGTGGAAAAACTTTTCGTCTACGCGATTCTTGGCGAATTCATCTAAGAATTCATACCGGCGAACGGCCATTTAAGTGCACCCAGTGCGATAAAACTTTCAGCTTTCGTAGTAGCTACACCTCACATATGCGTAACCATACAGGCGAACGGCCATATAAATGTGAATTATGCCCAAAAGCTTTTCGTGAACGTCGCGATTACACCGCTCATTTGGCTGTCCACAATAAAACAAAGTCATTCCATTGTCAGCACTGTGATAAAACTTTTAGCAGCTCCCGAAATTGTCGTCGACACGAACGCTTCCACATCCAGGAACGACCGTATTCATGCCATTGCGGCAAAGCCTTCACCCAAAAATCCCATTTCGTCGAACATCAGCGAATCCATAGCGACGAAAAACCCTTCCAGTGTCAACATTGTTCGAAAACTTTTCGAGTACAAAGCATTTTGTATCGTCATGTGAAAAGTCATACAGAACTATTCGAGTGCAAAATATGTAATCGAAAATACAACCGTAAGGATTCGTGGAAGAAACACCAAAAATCTAcattacatttacaaaattcGATGGCGAAAACCGAGAAAACGCACGAAACAGCTGAAGAAAATTCTATCGAACCAGAATATTTACTTGGAACTTAA
- Protein Sequence
- MSCNINEESSNQLKSDFNKAKSYIKQELVEPIDFPIEIKEELQIQEPNATRKGECGKKTATVKIEPSEETKNFETIFVDQSFKEENDEENNYEKIRLDQAPFSCKLCFKAFSTEPSFKRHNRNRHSKVQIKCKICDKSYSTIKVCRKHERRHTTTFKCEHCKKEFYDKRLWIDHCSIHTGVKNYKCELCGKAFRFLSNWHNHRRQHADGNPYDCFLCDEKFKTLTSYKEHLLAVHKTIEPFRCEFCDKSFEMKSLWLTHQRIHTGEKPFKCDDCGKTFRLRDSWRIHLRIHTGERPFKCTQCDKTFSFRSSYTSHMRNHTGERPYKCELCPKAFRERRDYTAHLAVHNKTKSFHCQHCDKTFSSSRNCRRHERFHIQERPYSCHCGKAFTQKSHFVEHQRIHSDEKPFQCQHCSKTFRVQSILYRHVKSHTELFECKICNRKYNRKDSWKKHQKSTLHLQNSMAKTEKTHETAEENSIEPEYLLGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -