Ster016315.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292279.1:18435137-18438534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.9e-06 0.00033 21.1 1.8 1 23 150 172 150 172 0.97 2 13 0.2 13 6.6 2.3 1 21 178 198 178 199 0.90 3 13 1.3e-05 0.00085 19.8 0.9 1 23 206 228 206 228 0.97 4 13 0.00014 0.0093 16.6 3.2 3 20 320 337 319 340 0.94 5 13 1.4e-05 0.00094 19.7 2.6 1 23 346 368 346 368 0.98 6 13 0.0037 0.24 12.1 0.9 1 23 374 397 374 397 0.95 7 13 0.0046 0.3 11.8 0.5 1 23 409 431 409 431 0.96 8 13 0.0065 0.43 11.3 0.6 1 21 439 459 439 460 0.93 9 13 2.3e-06 0.00015 22.2 0.9 1 23 468 490 468 490 0.96 10 13 3.8e-05 0.0025 18.3 2.4 1 23 496 518 496 518 0.97 11 13 2e-05 0.0013 19.2 1.1 5 23 528 546 524 546 0.93 12 13 7.2e-06 0.00047 20.6 0.2 1 23 552 574 552 574 0.98 13 13 0.27 18 6.2 0.9 1 23 579 602 579 602 0.94
Sequence Information
- Coding Sequence
- atggaatcaaCGTTGAAGTTCAACTTTCAAAAAATGTGTAGAACTTGTAAAGCTGAATCCGAAAATTTACAATCGATATATGATCCATTGTCAGATGATAAACAAATCAATTTGGCATATATGTTAATGGAGTGTGCTTCAATTAAAgtgAAAATTGATGATGGTTTACCAGTAGCGATATGTACGAGATGTGTTGATAGGCTGCAAAAAGCTTTTGAGTTTATATCGGAATGCCAACAAACTGATACTTATTTGCGTCTTCTGTTACAAGAAACCGATGAAGTTGTGATAAAAACTGAAAATCTCGATGATGGTACTTCTGGAAATGAAGATAGTATTGTTGTAgaagaaaaaatcattgttgaaaatataaaaaatgatacGGACACATCTTTGGatgaaacaaatcaattaaatttaggtACTCAAGAAAATTCTATTAGAATTTTCTTCTGTAAACTTtgtaataaaagatttaatcgTTTGGATAATGTAAAACGGCATATGGCAGtacatttaaaaaagaaaccTCATTTTTGTTCGATTTGTAACCGAGgatttaatgatataaaccgATTCAATAAACATTCAAAGAAGTGTAACAATCGAGATGTGCACGTTTGTAATGTTTGTAATAGAGGTTTTAGTCGACTTGACGCTCTTCAAGCACATAAAACCACGCATGCAGATGTCGATGATAAAGTGTTGGAGTCATTAcaaaatattgagaaatatattttagtgGAAAACATTGAATCGAAAGAGATGAAGGAGTTACAATCGCTTGATCGTTTCGAAGAAGTGACAAACCACGATAGTTCATCATCTCAAGATAGCGATAGTGACGATAGTCCAATTATCTTGAAATCAAATCGAGGTCGTCCTAAAAAACCTGACCCAGTTACTTCACAAGTTAACCGACGAAAAAAGGTGGTCTACCTTTCGGGAAATCCACCATGTCCGAtttgtcacaaaaaattcaaattagccAGCCAATTGAAGCGCCACTTGGCATGTCACGTAAAAACAAAACCGTTTTCTTGTCCGCAATGTGCGAAAAAGTTTGCACGTCGAGATCACATGTTGCGACATATGAAACTCCATGCCAACAAAAAGGAGTTCAAATGCGATATGTGTTTACGGGAATTTTATAAGGAATCGCAACTTGTGCAACATAAGGCTATTAAGCATGGTATTGGGCAACGGCAACTCCCGGAAAAACGATTCAACTGCGATATTTGTTTGAAGGCGTTTACGACGCAAAAGTATCGAGATATCCATGTCCGAGCACACGATGAAAACGCTAGAAAGGGTTATCGGTGCAACAATTGCGGGGAAACTTTTCTGTACAAAAGAGATCTTTTGCAACACGAAAAGCAAAACGTGGGttgtttgagaaaatttttatgcTCTGAATGTGGGCAGAGATTCATTCGGAAAAACTATTTGGTGGTTCATATGAGACGACATCGTGGCGAAAAGCCctataaatgcaaatattgcAGCAAAGcaTTCCCTCGATCGACTGACGTGACCAGGCACGAAAAGTTTCACACGGGTGAAAAGAATCACTTGTGCATTATGTGCGGAAAAGGCTTCGGACGGGCATATAACTTAACGTTACATATGCGGACACATACTGGAGAAAGGCCATATTCTTGTACTTATTGCGAAGCAGCTTTTGCTCAAAGCAACGACTTGAGAGCCCATGTCCGAAGACATACAGGGGAACGGTACTATTGCGATTTGTGTTCCGAATCGTTCCTTATGGGCTACATGCTGAAGCAACACAAACGCAATGTCCACAAAATTGATTGCACCAATGAGAAAATCGAACCAAAAAAACCAACGTAA
- Protein Sequence
- MESTLKFNFQKMCRTCKAESENLQSIYDPLSDDKQINLAYMLMECASIKVKIDDGLPVAICTRCVDRLQKAFEFISECQQTDTYLRLLLQETDEVVIKTENLDDGTSGNEDSIVVEEKIIVENIKNDTDTSLDETNQLNLGTQENSIRIFFCKLCNKRFNRLDNVKRHMAVHLKKKPHFCSICNRGFNDINRFNKHSKKCNNRDVHVCNVCNRGFSRLDALQAHKTTHADVDDKVLESLQNIEKYILVENIESKEMKELQSLDRFEEVTNHDSSSSQDSDSDDSPIILKSNRGRPKKPDPVTSQVNRRKKVVYLSGNPPCPICHKKFKLASQLKRHLACHVKTKPFSCPQCAKKFARRDHMLRHMKLHANKKEFKCDMCLREFYKESQLVQHKAIKHGIGQRQLPEKRFNCDICLKAFTTQKYRDIHVRAHDENARKGYRCNNCGETFLYKRDLLQHEKQNVGCLRKFLCSECGQRFIRKNYLVVHMRRHRGEKPYKCKYCSKAFPRSTDVTRHEKFHTGEKNHLCIMCGKGFGRAYNLTLHMRTHTGERPYSCTYCEAAFAQSNDLRAHVRRHTGERYYCDLCSESFLMGYMLKQHKRNVHKIDCTNEKIEPKKPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -