Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292274.1:59579699-59583689[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.8e-05 0.0012 19.4 0.8 1 23 300 322 300 322 0.98

2 10 0.015 0.97 10.2 0.5 1 23 336 358 336 358 0.96

3 10 5.4e-07 3.6e-05 24.2 2.1 1 23 393 416 393 416 0.96

4 10 0.00052 0.035 14.8 1.6 1 20 483 502 483 504 0.95

5 10 2.4e-05 0.0016 19.0 1.2 2 23 559 580 558 580 0.97

6 10 8.4e-06 0.00055 20.4 3.3 1 23 586 608 586 608 0.98

7 10 1.4e-05 0.00094 19.7 2.0 1 23 614 637 614 637 0.96

8 10 8.9e-08 5.9e-06 26.6 0.7 1 23 643 665 643 665 0.99

9 10 1.1e-06 7e-05 23.2 2.5 1 23 671 693 671 693 0.99

10 10 2e-07 1.3e-05 25.5 1.1 1 23 699 721 699 721 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.8e-05	0.0012	19.4	0.8	1	23	300	322	300	322	0.98
2	10	0.015	0.97	10.2	0.5	1	23	336	358	336	358	0.96
3	10	5.4e-07	3.6e-05	24.2	2.1	1	23	393	416	393	416	0.96
4	10	0.00052	0.035	14.8	1.6	1	20	483	502	483	504	0.95
5	10	2.4e-05	0.0016	19.0	1.2	2	23	559	580	558	580	0.97
6	10	8.4e-06	0.00055	20.4	3.3	1	23	586	608	586	608	0.98
7	10	1.4e-05	0.00094	19.7	2.0	1	23	614	637	614	637	0.96
8	10	8.9e-08	5.9e-06	26.6	0.7	1	23	643	665	643	665	0.99
9	10	1.1e-06	7e-05	23.2	2.5	1	23	671	693	671	693	0.99
10	10	2e-07	1.3e-05	25.5	1.1	1	23	699	721	699	721	0.97

Sequence Information

Coding Sequence: ATGTCGATTGATAATTCAGTGATTAACAACAATCGATCTCTACTTGACTCTAGCAATAGTGAAATTAATCAGAATGATGTACAATATATGAATAATGCCAATACACTTATAAATAGAATGGATTCAGGAGGTTTGCTCGATGTAGCGACGGCTGCAAGTTTATTTTTACCCGAAGGCCCTGAATCACTTCCACCCCCAGATCAATATCCCCCAGAAGAAATTTTATCTGCTCAAGATTTAACTGAGGAAGATAGAAAATTAGCAGCTGCCCTAGTGGCTGTACAATTGGTCCAACAACAAAAACAACAACAGCAACAGcagcttttattaaatgacGCTGGAATATCATCAGTTAATTCCCATAACTCTTCGGAAGTATTACCAGAAATAGTAAACTTAGataaaatgaCTCTGGGAAGATCAATTCCAAATACGCAGTCCTTAGTTCTACCGTCAATAGAAAAATCGGTATCTACAAACTATATAAACAACACCGGCTCACATATTTCAAATCAACAATTAAACATAAACAATGAACCAAATTTACTTTCCCAAACAACTCCAAAACGATCGAATCAATGGgccataaacaaaaataaaactaatgtaAAAAAAGGAGCAAATAAATTACAAttGTCAACAAAATCTCCGTTACGCTTTGCCGCCCTATCCAGTATTTGCTCACCATTTTCTGAAAGTCTTGATAACATAAAGATTGAAGAAGGACTAAATGAAGTAGATGATGCCGAATCGGACTATGACGTCAAAACGGAAACGCGACCTGCAAAGAAAAGTTTACCCCATAAGAAACGAATATCTCGGAAGTTAAGGCACAACCCCAAACATGTTAATTCGCTTTCAAAATGTAATAGTTGTGGAGATAATGTAACAATTGTTTACAAGTGTAACAGTTGTGGTGAACAATTTTCGAATCAATCAGAATATAGTGCCCATAAAGCTACGCATACTGGAAATAGTTCGGCAAATAAATTGGGCAATGTACCATTTGCGTGTCAACTTTGTCCCCAGAGATTCGATAGTCAGTTACTattttttgagcacttgaaaggGCATTACGAACCTTTGGTTCAATTGACTGAATTTCAGAAAAGTcgaattcaaatacaaaatataaaaagcagcGGTGAGAAAGAATCAACGTTAATGACCTCACCTTTTAAGTGTACAAAATGTGGACGAACGTTTAAACGCCAAAAAACATTCGAGGCACATATAAGGGACGTCCATCCGAATcTTGATTTGGAAGAATTTAGCGAGCCTGAAGATTTGATGGAAGGAATTCGATTTAAGGTTGTGGTTGATTCAGAAGATTGTGACAACGATAACGATATGTGGTATCGTGAAGACGAACTTCATGCAACTGAAGCTGATTTACGAgAATTGGAAGCTCAACAGTTTAAAGAAGAACAGATTAATTCTTCAGTTCATACTTGTCATCTTTGTGGAGCTATGTTTGAAACAAAATCGTTTTTAACACAACATTTAACACAATGTTATTTGGCTTTGAAACAAGAAgcagattttttaaattcttcaactAATGATATTCAACCAACAACAGCAAGTCAAAATGTACATTTTAATGATGATGAGgatgacgatgatgatgacGatccaaaatccaaaaaaaaccaaaagaaaaacactCAACTGGTGTGTACAATTTGCGGTAGAATATTTAATCACCGCAATTCACTGGTATATCACTTAAGAAGTCATTCGGGAGAAAGACCACACAAATGTGAGCATTGTGGAAAAAGCTTTTTTGCTTCTAGTGCTCTAAAGgtCCATTTGAGATTACATTCAGGTGCCAAGCCATTCAAATGTGAATTTTGTGGTCGCCACTTTCGTCAATGGGGAGATTTAAAGTATCATACTATTTCAATTCATTCAGATCAACGGCAATATCAATGTGAATATTGTGGAAAAGATTTTGCTCGTAAATACTCTCTAATAGTGCACAGACGAATACATActggagaaaaaaattatcaatgtgAATATTGCAATAAAACTTTTCGAGCCTCTAGCTATTTGCAAAATCACAGAAAAATTCACACGGGAGAAAAGCCGCATCCCTGTGATATTTGTGGAAAACCCTTCAGAGTGCGTTCGGATATGAAACGCCACATGAATACTCATAATAGGGATAGAACACAGAAACCGGATCCTATACAGACGGACATGCAAGATAACAATAgtAAATCAGAAATAACTATAAATGAGTTTTCCGATATTAATCAATTGTCAGCAGAATCGAATTCAACAGAATTAAATAAGGTTGAAGTTAATATGAAAACTGAGGCACAAGATGTCTTGCAAACGCCCAAAGAAGAAGATAATGGACCACTGTATGCTATTCAATCTGACCCATTGGCTATAAGGGAAGGTAACAATACCCTTTACGTTTGGCCCGTctatatgaattaa
Protein Sequence: MSIDNSVINNNRSLLDSSNSEINQNDVQYMNNANTLINRMDSGGLLDVATAASLFLPEGPESLPPPDQYPPEEILSAQDLTEEDRKLAAALVAVQLVQQQKQQQQQQLLLNDAGISSVNSHNSSEVLPEIVNLDKMTLGRSIPNTQSLVLPSIEKSVSTNYINNTGSHISNQQLNINNEPNLLSQTTPKRSNQWAINKNKTNVKKGANKLQLSTKSPLRFAALSSICSPFSESLDNIKIEEGLNEVDDAESDYDVKTETRPAKKSLPHKKRISRKLRHNPKHVNSLSKCNSCGDNVTIVYKCNSCGEQFSNQSEYSAHKATHTGNSSANKLGNVPFACQLCPQRFDSQLLFFEHLKGHYEPLVQLTEFQKSRIQIQNIKSSGEKESTLMTSPFKCTKCGRTFKRQKTFEAHIRDVHPNLDLEEFSEPEDLMEGIRFKVVVDSEDCDNDNDMWYREDELHATEADLRELEAQQFKEEQINSSVHTCHLCGAMFETKSFLTQHLTQCYLALKQEADFLNSSTNDIQPTTASQNVHFNDDEDDDDDDDPKSKKNQKKNTQLVCTICGRIFNHRNSLVYHLRSHSGERPHKCEHCGKSFFASSALKVHLRLHSGAKPFKCEFCGRHFRQWGDLKYHTISIHSDQRQYQCEYCGKDFARKYSLIVHRRIHTGEKNYQCEYCNKTFRASSYLQNHRKIHTGEKPHPCDICGKPFRVRSDMKRHMNTHNRDRTQKPDPIQTDMQDNNSKSEITINEFSDINQLSAESNSTELNKVEVNMKTEAQDVLQTPKEEDNGPLYAIQSDPLAIREGNNTLYVWPVYMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -