Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292279.1:44107429-44122492[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.3 6.2e+02 1.4 0.6 1 9 223 231 223 245 0.86

2 16 1.7e-06 0.00011 22.6 0.8 1 23 251 273 251 273 0.96

3 16 0.00015 0.0096 16.5 1.1 1 23 279 301 279 301 0.98

4 16 6.5e-05 0.0043 17.6 3.6 1 23 313 335 313 335 0.97

5 16 0.79 52 4.8 0.2 8 23 529 544 528 544 0.92

6 16 1.2e-06 7.9e-05 23.1 0.1 1 23 550 572 550 572 0.95

7 16 0.0037 0.25 12.1 1.3 1 17 689 705 689 706 0.94

8 16 2.6e-05 0.0017 18.9 1.0 1 23 717 739 717 739 0.96

9 16 0.0035 0.23 12.2 0.3 1 23 745 767 745 767 0.96

10 16 0.019 1.3 9.8 0.6 1 23 773 795 773 795 0.94

11 16 5.5e-06 0.00036 21.0 1.3 1 23 801 823 801 823 0.96

12 16 0.0015 0.099 13.3 0.7 1 23 829 851 829 851 0.96

13 16 1.8e-06 0.00012 22.6 0.8 1 23 857 879 857 879 0.98

14 16 0.00032 0.021 15.4 3.0 1 23 885 907 885 907 0.97

15 16 1.8e-05 0.0012 19.4 3.5 1 23 913 935 913 935 0.96

16 16 1.7e-05 0.0011 19.5 0.5 1 23 941 963 941 963 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.3	6.2e+02	1.4	0.6	1	9	223	231	223	245	0.86
2	16	1.7e-06	0.00011	22.6	0.8	1	23	251	273	251	273	0.96
3	16	0.00015	0.0096	16.5	1.1	1	23	279	301	279	301	0.98
4	16	6.5e-05	0.0043	17.6	3.6	1	23	313	335	313	335	0.97
5	16	0.79	52	4.8	0.2	8	23	529	544	528	544	0.92
6	16	1.2e-06	7.9e-05	23.1	0.1	1	23	550	572	550	572	0.95
7	16	0.0037	0.25	12.1	1.3	1	17	689	705	689	706	0.94
8	16	2.6e-05	0.0017	18.9	1.0	1	23	717	739	717	739	0.96
9	16	0.0035	0.23	12.2	0.3	1	23	745	767	745	767	0.96
10	16	0.019	1.3	9.8	0.6	1	23	773	795	773	795	0.94
11	16	5.5e-06	0.00036	21.0	1.3	1	23	801	823	801	823	0.96
12	16	0.0015	0.099	13.3	0.7	1	23	829	851	829	851	0.96
13	16	1.8e-06	0.00012	22.6	0.8	1	23	857	879	857	879	0.98
14	16	0.00032	0.021	15.4	3.0	1	23	885	907	885	907	0.97
15	16	1.8e-05	0.0012	19.4	3.5	1	23	913	935	913	935	0.96
16	16	1.7e-05	0.0011	19.5	0.5	1	23	941	963	941	963	0.98

Sequence Information

Coding Sequence: ATGGAAATAGTTTTACGAAGATGTTTTCTTTGTTCTGAAAACCAAAGACTTTTAATTCCTCCAGAACAATTATTAGCCGAATGTGAGGAAATTACTGTGGACCAAATTTTAGAAGAGCTCCACTTCTGGACTATTTCAGATGGTGGTCAAGTTGACCGTAGTCTATGTTATATTTGTATGGCAAAACTTTTATGTTGTTATCATCTCAAAAGAAAATGTAATCAACTAGCAAAAGAATGGAAAATCGGTTCTACTTCTTTGCCTACGTCATCTGGTATCAATCCAGAGGATAACTCCGAAATGGTGGAAGTATGGAAAATGGTCGAAGTCTCCGAAAACAGTACCGAAGAAAAACCAACCCCTAATTGCATTAATATCAACATTGAGATTGAAAATGTTAACAAATCTCTTCATCCCAAAAACGaaaatatttttgaagaagtTTTAATCACAAACGATAACTTCCAGACCTGGGACACAAGTGGGTCGTATCATGACGAAGAAGAAACTGATATTGCAATCGAAAAGTGCAACGATATAAATGATGTTAACATTTTTGAAGTGCATACGAATGATGCAGATGATAAGGCGGGAATATgTAAATCATTCCTCAAATCTAAGGGTTTAAGTCTACACAAACTGACCCATACGGCCAACGAAAAATCTTACATGTgtaatgtttgtaagaaGCCGATTCGGTATTCATGTATTTCGGCTAGTCATAAAATAATTCACGCCGACAAGCAATTGTATAAGTGCGATGTTTGTGataaatcatttgttCATCCCAGTGAATTAAAAGATCATAAAGTGATTCATTCCGTTGAAAAACTatatgtttgtgatgtttgtaAGGAATCCTATCGTTTCCAAAGTAATTTAGATGAGCATAAAAAGAGTCATTCCGTTGAAAAGGAGAGAAAAGGAAAGAAGGTGTATCGgtgtgatgtttgtgataaagttTTTCGCCATTGGGGTGGATTACATTCGCACAAGTATAGGCACATGAAAGATAAACCCTTTGTGTGCGATGTTTGTGaTGGTGAAGAACTAGATGGCATCTTGTGTTGTATCTGTATGGCAAATCTTTTAAGTTCATATCAACTTAAACAAAAATGTGATCTCATAGAAAATGAATGGAATGATAATCCTACGATAGAATCTTTGCCAACATCCAATAGCATCAAATCGGAGGATAATCAAGTCGAACCTAATGAACCTCATAGTGAAATGTATGAGGTATGGAAAATGATCGaagaaaatgaacaaaatgCGTCCAATTCTTTGGAAAACCAAATCACAACCCGGAAACCAAGAAAAACATACGGCACTAGGTTCCGAATAAAAAATGaaaaaaaaataaattcagctAATAGTCCGCAAAAACGGAACCGAAAGTTGGGAATTCGCAACAGTAAAAAAACAAAGTCGGATGATCTTGAAGATTTAATTCCATATACCAAAATTGGAACACCAACATCCAATGTGGTGGTCGTAGAAGATTTTATATCACTGACAAAAATCGCAACGCAAAAAATTAATACTGCTGAAAGAATTGCTATCACAGAAGCGCCAAGTATAAaTGAATCTTATCGGTTTTTAAGTAATTTAGAAGATCATAAAAGAGTTCATGGCAATAGGAAACTATATAATTGCAATATTTGTggtaAATCATTTAATCAGCCAAGTGCCCTAACGATTCACAAAGGTATTCATGTTGATAATAAACGACACGTGTGTGATGTTTGTCATGCTGCAAATCTTGCCCGATTTTTATGCCTACTTTGTGTAGCCAAAGTACAAACTTGTTATACATTAAAACGGAAATGTTATCAAGTTAAAGAACTAGAAAATCTTCCTAATTCACCACTGTTAAACATCAATTCTGAAGAGGCCAAAAGAAATCCAATTGCCGATACTGAAGAGTTGACCATCACAAATCTTTTTTCACCTAAATTTGAAGTGGATGAAGgaattttcataacaaaaagtgAACAATCAGCTCCAGAGTCTGGACCAAAAAGAGAAGATTATGGAAATGATTCAAATCCAGGGGAAAGACCATTTGTTTGTTCGGTTTGTCAAAAAGGGTTCAAGCACAGATAtcatttgaaacaatatttcatTATACACACGGGGGAAAAGCcacacgtttgtgatgtttgtaATAAATCGTTTGCAAAATCGGGGAATTTATCACaacataaattaattcattcgGTGAAAAGGCAACATGTGTGttatgtttgtaaCAGGGCATTTGCTAATGTTGATGTTTTGAAACAACATTACATAGTTCACAACAATCGGCAACgttatttttgtgatttttgcAgTAAATCTTTCACTGAAGAAAGATTTTTGGTAGCACATAGTGCTATACATTCGGGCGAGAAGCCCTATTTTTGCGATGGTTGTGataaatcatttagtCGATCAAGTACTTTGTTGTCCCATAAACTTCTTCACAGTGGCGAAAAACCttatgtttgtgatgtttgtaataAAGCGTTTCACTATCCTGCCGGATTATATCAACACAAATATATTCATACATCGAGGAAAGGATATGAATGCGAAATTTGtaaaaaatcgttTAGTAAGCCGAGTAATGTgaataaacataaattgattCATTCCGGAGTAAAACCacatgtttgtgatgtttgtaattctTCATTTGCTCGTTCCGATGATTTACATAAACATAAGAAAGTCCACACGGACGAAAAGCCTTACGAGTGTGATATTTGTAataagCATTTTAGACGTTCAGATCATTTAGCAACGCATAAAATTTTGCACAGTGGTGAAAAACCGTATGTTtgcgatgtttgtaATAAATCGTTTAATCGAAAAGATGTTTTAGTGACCCATAAAATCACTCATAGTAGTGAAAAGCCGCatgtgtgtgatgtttgtaATGATCTAATCCTTGATCGAACCTTGTGCTTAATTTGTCTATCCAAAGTTTACGATTGTTATAATTTGACTAGAAAATGCGACCAAGTGGAAAAGTCTTTGGAAACTGTAACCAACGGATTGTATTCATTTTCGGCAAATAATATCAAACTTGAAAACACTTTCGAACCTGAAGAAAATCGCCTGGAGGAATGGGAAATCAAAGCCGAAGAAATTGATATCAATCAGGGAATTTCAAAAGgatcAACAGTGGAAACTGATGAGAAAGTTGACACAAGTTTTGAGGATAAAACAATGACAAAAAATCATGATAAATTtcatgtttgtgatgtttgtagtaagagTTGA
Protein Sequence: MEIVLRRCFLCSENQRLLIPPEQLLAECEEITVDQILEELHFWTISDGGQVDRSLCYICMAKLLCCYHLKRKCNQLAKEWKIGSTSLPTSSGINPEDNSEMVEVWKMVEVSENSTEEKPTPNCININIEIENVNKSLHPKNENIFEEVLITNDNFQTWDTSGSYHDEEETDIAIEKCNDINDVNIFEVHTNDADDKAGICKSFLKSKGLSLHKLTHTANEKSYMCNVCKKPIRYSCISASHKIIHADKQLYKCDVCDKSFVHPSELKDHKVIHSVEKLYVCDVCKESYRFQSNLDEHKKSHSVEKERKGKKVYRCDVCDKVFRHWGGLHSHKYRHMKDKPFVCDVCDGEELDGILCCICMANLLSSYQLKQKCDLIENEWNDNPTIESLPTSNSIKSEDNQVEPNEPHSEMYEVWKMIEENEQNASNSLENQITTRKPRKTYGTRFRIKNEKKINSANSPQKRNRKLGIRNSKKTKSDDLEDLIPYTKIGTPTSNVVVVEDFISLTKIATQKINTAERIAITEAPSINESYRFLSNLEDHKRVHGNRKLYNCNICGKSFNQPSALTIHKGIHVDNKRHVCDVCHAANLARFLCLLCVAKVQTCYTLKRKCYQVKELENLPNSPLLNINSEEAKRNPIADTEELTITNLFSPKFEVDEGIFITKSEQSAPESGPKREDYGNDSNPGERPFVCSVCQKGFKHRYHLKQYFIIHTGEKPHVCDVCNKSFAKSGNLSQHKLIHSVKRQHVCYVCNRAFANVDVLKQHYIVHNNRQRYFCDFCSKSFTEERFLVAHSAIHSGEKPYFCDGCDKSFSRSSTLLSHKLLHSGEKPYVCDVCNKAFHYPAGLYQHKYIHTSRKGYECEICKKSFSKPSNVNKHKLIHSGVKPHVCDVCNSSFARSDDLHKHKKVHTDEKPYECDICNKHFRRSDHLATHKILHSGEKPYVCDVCNKSFNRKDVLVTHKITHSSEKPHVCDVCNDLILDRTLCLICLSKVYDCYNLTRKCDQVEKSLETVTNGLYSFSANNIKLENTFEPEENRLEEWEIKAEEIDINQGISKGSTVETDEKVDTSFEDKTMTKNHDKFHVCDVCSKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -