Ster013257.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292278.1:8027317-8028603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.8e-07 4.5e-05 23.9 0.3 1 23 67 89 67 89 0.98 2 12 3e-07 2e-05 25.0 1.9 1 23 95 117 95 117 0.99 3 12 3.5e-07 2.3e-05 24.8 0.6 1 23 123 145 123 145 0.99 4 12 0.00017 0.011 16.3 12.4 1 23 151 173 151 174 0.96 5 12 0.0095 0.63 10.8 0.5 1 11 179 189 179 194 0.90 6 12 2.4e-06 0.00016 22.2 3.9 1 23 230 252 230 252 0.98 7 12 0.00026 0.017 15.7 2.9 2 23 259 280 258 280 0.97 8 12 7.2e-06 0.00047 20.6 3.0 1 20 286 305 286 307 0.95 9 12 9.2e-06 0.00061 20.3 1.6 1 23 315 337 315 337 0.95 10 12 1e-05 0.00067 20.2 3.8 1 23 343 365 343 365 0.99 11 12 0.0002 0.013 16.1 0.4 1 23 372 394 372 394 0.98 12 12 0.00041 0.027 15.1 5.4 1 23 399 421 399 421 0.98
Sequence Information
- Coding Sequence
- ATGATGGAATTTATCAAATTGGGAAAACGGGACGACGAGAAGGTGGAGAGCACGCAGATGACGGATTTGTCGTACAAAATCGACGATATATCGAAATCGGAGAAAAAGTATCATACACTAGGTCCCACGTTGAACGTGGAGAAGGCAATTACGATAAATAAACCGACGCAGAAATGTCTGGGCAGTGGTCGCCAATTGTTCAATTGTAACGTATGCCAAAAGGTCTTCGCCCAAAGTGCTAAACTCGCCGAACATATGAGATCGCATACGGGCGAACGTCCGTTTAAGTGCGACGTTTGCGGTAAAAGTTTCGCCCAAACCGCTCATTTGGTCACCCATAAACGGACCCACACTGGCGAGCGGCCGTTTAAGTGTAACGTTTGTGCGAAAACTTTTTCGCAGAGTGGAAATTTGTCGCAACATGTACGAATTCATACGGGCGAGCGCCCGTACAAGTGTAATCTATGTCACAAATGTTTTTCGCAAACGGCCCACCTCACCACGCATAAGAAAACGCATCACGAGAATCGATTTTTCAAGTGTGAGATTTGCCATAAAACTTTTTCGCTACACGAAACAATACAGCCCGAACAGCCGTTTCGGTGTAATACGTGCACGATGAACCAGTCGGGGATTTTAATTTTGCCAAATTCGAACAACACTTCCGGCCATGCCGAGGAACGGACGTTCGAGTGCACGATTTGTTGCAAGGCCTATTCGCGAAAGAGTAATCTAACGAATCACATGCGGTCGCATGACACAACACGATCGTTAAAGTGCTCTTTTTGCAGCGAAACATTCAAACACACCGAGGAGCTAACCGCTCATAAATTGACCCACAACGACGAATATTCGTTCAAATGCGACCACTGCAACAAAACCTTCTCCGAATACAGCAATCTCAAAGCCCATACCCATGCGAACCAATGCGAGGCACGCGCATTCAAATGCGACAGCTGCGAAAAAAGTTTCACCGAAAAATCATCCCTCAATCGCCACAAGGGCATTCACAATGTCAAGCGAATGTTCCAATGTAACTTTTGTAGCAAAAGCTTCTCGTGGAATTACAGTCTCAAGAAACATCTGCGAACGCATAAAAACGATCGAGCCGTGTACGTTTGTGAgatttgtatgaaaaaattcGATCAAATCGAACAACTAAATGCACATAAACAAACACATTTTACTGAAACGCACGAGTGCAACGAATGCTATAAAACGTTTTCATTACGTGAACATTTAGTAATGCATAAAAAAACCCATGGAATCCCtgattatgttttttga
- Protein Sequence
- MMEFIKLGKRDDEKVESTQMTDLSYKIDDISKSEKKYHTLGPTLNVEKAITINKPTQKCLGSGRQLFNCNVCQKVFAQSAKLAEHMRSHTGERPFKCDVCGKSFAQTAHLVTHKRTHTGERPFKCNVCAKTFSQSGNLSQHVRIHTGERPYKCNLCHKCFSQTAHLTTHKKTHHENRFFKCEICHKTFSLHETIQPEQPFRCNTCTMNQSGILILPNSNNTSGHAEERTFECTICCKAYSRKSNLTNHMRSHDTTRSLKCSFCSETFKHTEELTAHKLTHNDEYSFKCDHCNKTFSEYSNLKAHTHANQCEARAFKCDSCEKSFTEKSSLNRHKGIHNVKRMFQCNFCSKSFSWNYSLKKHLRTHKNDRAVYVCEICMKKFDQIEQLNAHKQTHFTETHECNECYKTFSLREHLVMHKKTHGIPDYVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349053;
- 90% Identity
- iTF_01349053;
- 80% Identity
- -