Basic Information

Insect: Sisyra terminalis
Gene Symbol: su(Hw)
Assembly: GCA_958496175.1
Location: OY292274.1:26167472-26171216[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.008 16.8 1.8 1 23 122 145 122 145 0.96

2 11 5e-05 0.0033 18.0 1.1 1 21 172 192 172 193 0.95

3 11 1.6e-08 1.1e-06 28.9 0.6 1 23 204 226 204 226 0.98

4 11 0.00011 0.0071 16.9 0.2 1 23 236 258 236 258 0.98

5 11 1.8e-05 0.0012 19.4 0.5 1 23 264 286 264 286 0.99

6 11 1.1e-07 7.1e-06 26.4 0.8 1 23 292 314 292 314 0.99

7 11 8.1e-05 0.0053 17.3 2.5 1 23 320 342 320 342 0.94

8 11 3.6e-05 0.0023 18.4 3.0 1 23 348 371 348 371 0.96

9 11 2.4e-06 0.00016 22.1 0.2 2 23 378 399 377 399 0.94

10 11 5.4e-07 3.6e-05 24.2 2.6 1 23 405 427 405 427 0.98

11 11 1.8e-06 0.00012 22.6 3.1 2 23 434 456 434 456 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.008	16.8	1.8	1	23	122	145	122	145	0.96
2	11	5e-05	0.0033	18.0	1.1	1	21	172	192	172	193	0.95
3	11	1.6e-08	1.1e-06	28.9	0.6	1	23	204	226	204	226	0.98
4	11	0.00011	0.0071	16.9	0.2	1	23	236	258	236	258	0.98
5	11	1.8e-05	0.0012	19.4	0.5	1	23	264	286	264	286	0.99
6	11	1.1e-07	7.1e-06	26.4	0.8	1	23	292	314	292	314	0.99
7	11	8.1e-05	0.0053	17.3	2.5	1	23	320	342	320	342	0.94
8	11	3.6e-05	0.0023	18.4	3.0	1	23	348	371	348	371	0.96
9	11	2.4e-06	0.00016	22.1	0.2	2	23	378	399	377	399	0.94
10	11	5.4e-07	3.6e-05	24.2	2.6	1	23	405	427	405	427	0.98
11	11	1.8e-06	0.00012	22.6	3.1	2	23	434	456	434	456	0.95

Sequence Information

Coding Sequence: atggCTACCCTAAAGGTAGAGATAGTAGATAAGTCTTCTATTTCACATGACGATAGTATGGATGGCATGGACAGTATTCTGTCCGGCGAAGACACTGAAGAGGAAGATTTAGAAGCTGGAGAAGTCAAGATGATCGAATGTCCAGTTTGCAACTTAAACGTTATTTCTTTTatgaTGAAAGAACATAAGGAAACTTGTGGTGGTGCTGAAGATATTTCCAGAGAAGTATACGTAGATAGTAACGAAGATACAAACGAGGATGAATCTGATGAAAATACGAACCTTCCAGATCCAACAAAAACTAAACTAACCAGATGTGAATGCTGTGACGAGACTATTGATAAAGCGCATATAACTGGCAAATTTAAATGTCCTGAATGCAATTTCCTTTTTaccaaggaaaaaaatttgcataagcATATTGATGTCATTCATTCTTTCACAACCGAAGATTTAAATTCTTCTGAATTAGTTCTGACcgcaaaagaaaataaatctgaTAGTCCAAAAAGTTTTCCTTGTCCACGTTGCAATCGAGTCTACACAAGAAAGTTTCACTTGGACCGACATATTCAACAAACTGGTTGTGATGGCAAACAAAAACCAAGCTTTCCTTGCAAaGTATGCGGAAAAGTATTTAATCGTAAAGATAATTTACGAGACCATTTGCGACTCCACACAGGGGAacaaaaaccaaagaaaattttcccatGCCCTATATGCAAACGTGAATTTCATGGTCCTGCTGTTTTGTATGTCCACATGCGTACACATACAGGAGAAAAACCATTTAAATGTGATTTATGCCCAAAAGCATTTCCGTCCAGTGGTGCAAAAATGAAGCACCGCCGAACTCATACTGGGGAAAGGCCATATGTTTGTAAAGAGTGTGGAAAAACTTTTGCCGCAAAAGAAACTTTAAATCGCCACACTCGTACTCATACCAACGACAAGCCGCACGCGTGCAGCTTTTGTGGGCAACGATTTATTCAAGCCTCGCAACTAAGGGCTCACATTTTCCACCATACTGGGGAATATGGGCATAAATGCGACCAATGCGGAAAAACATTTAACCGACGAATTCGATTAACAATGCACATCAAGTATGTGCATGAAGGAGCCCAACCACTTCCATGTGACAAGTGCGATAAAACATTTATTCGAAAAGAGGATTTGCAGCGTCATGCTATCTTACATAGTGGAGTTAAAGaacATGAATGTCCCACTTGTGGTAAATGTTTTGCTATTAAATCATCGTTAAAGATCCACATGTTGACTCATCGTAAAGAGCAACCACGTTCTTGTCACGATTGTGGAAGAGCTTTTATTCGTCAAGATTGTCTTATTAGACATATGCGAGCTAAACATCGTGATGATTTACAAAATATCATGATAAATGCTGAGAAAAAACGATTAATTGCTACAGTTGCATCCACCGACGTAGACGAAATAAAAGAGTCGCCAATTTGGACTGAAGTAACATTAACAGATTCAATCAAAGAATTATTAATGCTCTTGGTTGATGAAGAATCATTAGAATCCTTTGGTTGGCCACAAACTCCTGTCGACAAATTGTTGGATTTATTAATTATCCGATGTGGTCATAAACCGGCAAAAGAAGAAGACTATTCTTATGTTGATCGGTTACGCgaaaatacaaaattacttttcaCAGCTGTAATTGATGATCAATCTGTTAAAACTTTACTTAATAACAAAACTGTTGACGAGGTTATTCAACACGTTTTAAAATTAGCtaagaattaa
Protein Sequence: MATLKVEIVDKSSISHDDSMDGMDSILSGEDTEEEDLEAGEVKMIECPVCNLNVISFMMKEHKETCGGAEDISREVYVDSNEDTNEDESDENTNLPDPTKTKLTRCECCDETIDKAHITGKFKCPECNFLFTKEKNLHKHIDVIHSFTTEDLNSSELVLTAKENKSDSPKSFPCPRCNRVYTRKFHLDRHIQQTGCDGKQKPSFPCKVCGKVFNRKDNLRDHLRLHTGEQKPKKIFPCPICKREFHGPAVLYVHMRTHTGEKPFKCDLCPKAFPSSGAKMKHRRTHTGERPYVCKECGKTFAAKETLNRHTRTHTNDKPHACSFCGQRFIQASQLRAHIFHHTGEYGHKCDQCGKTFNRRIRLTMHIKYVHEGAQPLPCDKCDKTFIRKEDLQRHAILHSGVKEHECPTCGKCFAIKSSLKIHMLTHRKEQPRSCHDCGRAFIRQDCLIRHMRAKHRDDLQNIMINAEKKRLIATVASTDVDEIKESPIWTEVTLTDSIKELLMLLVDEESLESFGWPQTPVDKLLDLLIIRCGHKPAKEEDYSYVDRLRENTKLLFTAVIDDQSVKTLLNNKTVDEVIQHVLKLAKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349054;
90% Identity: -
80% Identity: -