Ster017816.1
Basic Information
- Insect
- Sisyra terminalis
- Gene Symbol
- -
- Assembly
- GCA_958496175.1
- Location
- OY292279.1:44086363-44102354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.8e-05 0.0038 17.8 0.7 1 23 155 177 155 177 0.96 2 21 3.2e-05 0.0021 18.6 0.4 1 23 183 205 183 205 0.96 3 21 0.00054 0.036 14.7 0.1 1 23 211 233 211 233 0.97 4 21 3.5e-06 0.00023 21.6 3.3 1 23 239 261 239 261 0.97 5 21 0.00015 0.0099 16.5 1.8 1 23 267 289 267 289 0.97 6 21 0.00077 0.051 14.2 0.1 1 23 295 317 295 317 0.97 7 21 1.3e-05 0.00089 19.8 1.2 1 23 323 345 323 345 0.98 8 21 0.00028 0.018 15.6 0.6 1 23 351 373 351 373 0.97 9 21 9.1e-05 0.006 17.2 0.9 1 23 379 401 379 401 0.97 10 21 0.0004 0.026 15.1 4.7 1 23 566 588 566 588 0.98 11 21 5.9e-06 0.00039 20.9 1.5 1 23 594 616 594 616 0.96 12 21 0.0073 0.48 11.2 2.0 1 23 674 696 674 696 0.98 13 21 0.00017 0.011 16.3 0.9 1 23 702 724 702 724 0.97 14 21 0.7 46 4.9 0.1 1 17 730 746 730 747 0.91 15 21 5.2e-05 0.0034 17.9 1.2 1 23 856 878 856 878 0.98 16 21 2.7e-06 0.00018 22.0 0.3 1 23 884 906 884 906 0.98 17 21 4.6 3e+02 2.4 0.1 9 23 937 951 936 951 0.88 18 21 1.1e-06 7e-05 23.2 0.4 1 23 957 979 957 979 0.97 19 21 0.00014 0.0091 16.6 2.2 1 23 985 1007 985 1007 0.96 20 21 3.4e-08 2.2e-06 27.9 1.9 1 23 1013 1035 1013 1035 0.99 21 21 4.9e-07 3.2e-05 24.3 0.4 1 23 1041 1063 1041 1063 0.97
Sequence Information
- Coding Sequence
- ATGAAACATCAATACTGGACAACAGGTAGCTTAGACGAGGACGTCGAAAATTGGAGAAAGATAGAAAAGGATGGATTCGATTATGGAAAAGCTCGAAAAGCTTTTCCCCAGATTTCAGATGTGGAAAAACTTGGCCAAGTTTTGTGCTTCATTTGTTTGGCGAAAATTCAATGTTGccatgaattaaaaacaaaatgcgatcaaataagaaaacaattggaATCTGTAACCATTTCCTCATTAAGTGATCTGAAACAAAACTTcaagaatggaaaaaaatccaatGAAAATAGTAAAAGTTTGGACGAAGTTACCCCGACGACCGAAATACGTATGGAGGTTTCAACTACAAGTGATTGTATGCCCTTTAAAACTGAAATCGAAACGGACACAGAAATTTTTGCACTACAAAGCGaaataaaaaaaagcgaTGAGGACGATAAAATTTCGATGAAAAAATCTTTTCCTTGTACAGTTTGTCCTAAAGTTTGTACGTCATCATGGAATTTACGGCAACATTCCTTGATTCATACGGATGAAAAAACATATgcttgtgatgtttgtaaTAAAACATTTAACGCTTCTGCCAATTTAACAAAACATAAAACAATCCATTCGGGCAAAAAAAGTttcgtttgtgatgtttgtgGTAAATCATTTGATCTCATCGCCTTATTAAAAGAACACAAAAATAACCATACCGAAGAAAAACCTCACGTTTGTGACATTTGTAataAGTCTTTTACTGTACGTTCCagtttaaataaacataaaagaaaTCATAGTGTTACCAAACcgtacgtttgtgatgtttgtaACAAATCATTTTCGCGATATGAACGATTCGAACAACATAAAATAAAGCATACGGGTGAAAAGCCTTACgcttgtgatgtttgtaaTAAATCTTTCATGGCGTCTGAAAGTTTAATCACACATAAATTGATTCACACGGGTGATAAACCttatgtttgtgatgtttgtcataaaacATTCACTGTTTCATCTAGTCTGGTCACCCATAAGTTAATTCATAGTGGAGAGAAGCCGTACGTTTGTGACGTTTGTAATAAGTCATTTAGTTTAGTCAGTCGTTTAAAGTCACACAAATTGATTCATTTTGGTAAAAAACTTTACgattgtgatgtttgtaaaaaatcatttacGCTATCTGGAACTTTAAAGACGCACAAGTTGGTTCATATTGATGAAAAGTCTTACGATTGTGATGTTTGTCATTTCATAAACTGTTATCAAAACTTGTGTTTCATTTGTGCAACAAAAGTGCAAGCATGTTACGATTTCAAAGCCAAATGTGGTCAAACCCAAAGTGCATTGCAAGCCTATGCAGAATCAAACGAAGAGGAGGTGGAAATTTCACTGCAATTATCACCTTCCCCAGATTCTTCCATCAaatctgaaattaaaattgacgAAGATCTgtttcatattgaaaaaaacgataCGAACTTGATCGTAAACGAAATTGCCATCCCAAGTGAAAATCCAAGCGATGAAAAATTTACCGTGGAAATCTTATCAAATACAAACATCACAACCCAAGAACCAAGTGCTTCGAATTGTTCAATTGAGTTGGAACGCGTCAATAGCATTCCCCCATTAGaaatcaaagttgaaactaccaaaaaaataaaagaaaatcaaaccaCAAATCCACCTGCACCGGAACGGCCCTATGTTTGTACAGTGTGCTTTAAAGCCTTTAGACAAAAAATCCATTTGCATGAACATTTTCGAGTTCATACGGGAGTCAAACCTtttgtttgtgatgtttgtaATAAGTCATTTAAACGTTCAATTACATTACGACGCCATAAAATAAATCACATCACTAAAGAATCAAATATTGGTGAGAAATTAGTTTGCCATTTAAATTCTTCGACTAATCATGAGACTATCGAAACTATTGAAAAAGATCAAATCGATAATTGTAATAAATCATTGGATCAGCCAAGTGTATTGAATGAAGAAACCATTGTTTACTTTGGCAATAAAACttatgtttgtgatgtttgtaATAAATCTTTAAGTTCTATGCAATGTTTAACGTATCATAAAATGATTCACACGGGCGAAAAACCGCATGTTTGTGATATTTGTCAGAAGGCATTCATTCGTGTAAATGACTTAACCATGCATAAACGGCTACACAATCGGAAAGAACATTatgtgtgtgatgtttgtaAACAAGAATACAGAACTGTTGGAGATTTACGAGAATCTTTGGAATTTCCATTAAGAATTGTTAAATCAGAAGTTGATTACGATAAAGTATACAAAGAAAACTTCAGAAAAAATCATAGTCCAGGAAAATGTAAGAAAACTCCTGAAGATATCCAACATGGAAGAAATTCGTGGACATCTGAACTTGATACCAAAGAGTTTAAAGCTGAAGAAGTCGACCACTATTTACCAAATATCCAAGAGGCAAATTCATCGACTTATTTGTCGTTAAAACGCGATATTGACATTGATGAGGGAATTTTTACCACTACTAAAGaATCAAAAACCACAGTAGAAAGAAAACCGTTTTTAAAACGGCGTTTTACTTGTACAATTTGTGCGAAAAGTTTCGGCCGTAAACAAGATTGGCGCCAACATTATCGAATTCATACGGGTGAAAGGCcatacgtttgtgatgtttgtaATAAGCAATTTACTCAATCGGGGAATTTAAATGTACATAAGTTGATTCATACAGGAGAAAAATGTTATGTTTGTGATATTTGTAGTAAGTGTCGTGGATTTGGTTTGTTTTGTTGGAAAAGTCAATTGATTTATTGTCAATCATTTATTCGTCCTAGAGATTTAATAAAGCATAAAGTTTTGCATTCGGGCGAAAAACCGTATgcttgtgatgtttgtaataaaTCATTTAGTCGATCTGATAATTTAGTGCAACACAAATTGATTCATGCCACTGAAAAGCCtcatgtttgtgatgtttgtaATAAATCGTTTGCCCATAAAACATTGTTAGTGGCACATAAATTGAATCATACAGGTGAAAAACCGTACGTTTGTGATTTGTGTGatAAATCTTTTACTCGGACGAGTAATTTAAAGAAACATCAGTTGACACATTCTAATGAGAAGCTTTATGCTTGTaatgtttgtgAGAAATCGTATAATCAGGCGAGCAATTTAAGAAGACATCAGTTAGTGCATGCTAACGAGGCAAAGGGATGA
- Protein Sequence
- MKHQYWTTGSLDEDVENWRKIEKDGFDYGKARKAFPQISDVEKLGQVLCFICLAKIQCCHELKTKCDQIRKQLESVTISSLSDLKQNFKNGKKSNENSKSLDEVTPTTEIRMEVSTTSDCMPFKTEIETDTEIFALQSEIKKSDEDDKISMKKSFPCTVCPKVCTSSWNLRQHSLIHTDEKTYACDVCNKTFNASANLTKHKTIHSGKKSFVCDVCGKSFDLIALLKEHKNNHTEEKPHVCDICNKSFTVRSSLNKHKRNHSVTKPYVCDVCNKSFSRYERFEQHKIKHTGEKPYACDVCNKSFMASESLITHKLIHTGDKPYVCDVCHKTFTVSSSLVTHKLIHSGEKPYVCDVCNKSFSLVSRLKSHKLIHFGKKLYDCDVCKKSFTLSGTLKTHKLVHIDEKSYDCDVCHFINCYQNLCFICATKVQACYDFKAKCGQTQSALQAYAESNEEEVEISLQLSPSPDSSIKSEIKIDEDLFHIEKNDTNLIVNEIAIPSENPSDEKFTVEILSNTNITTQEPSASNCSIELERVNSIPPLEIKVETTKKIKENQTTNPPAPERPYVCTVCFKAFRQKIHLHEHFRVHTGVKPFVCDVCNKSFKRSITLRRHKINHITKESNIGEKLVCHLNSSTNHETIETIEKDQIDNCNKSLDQPSVLNEETIVYFGNKTYVCDVCNKSLSSMQCLTYHKMIHTGEKPHVCDICQKAFIRVNDLTMHKRLHNRKEHYVCDVCKQEYRTVGDLRESLEFPLRIVKSEVDYDKVYKENFRKNHSPGKCKKTPEDIQHGRNSWTSELDTKEFKAEEVDHYLPNIQEANSSTYLSLKRDIDIDEGIFTTTKESKTTVERKPFLKRRFTCTICAKSFGRKQDWRQHYRIHTGERPYVCDVCNKQFTQSGNLNVHKLIHTGEKCYVCDICSKCRGFGLFCWKSQLIYCQSFIRPRDLIKHKVLHSGEKPYACDVCNKSFSRSDNLVQHKLIHATEKPHVCDVCNKSFAHKTLLVAHKLNHTGEKPYVCDLCDKSFTRTSNLKKHQLTHSNEKLYACNVCEKSYNQASNLRRHQLVHANEAKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -