Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292276.1:7481470-7492329[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.37 25 5.8 5.6 1 23 60 82 60 82 0.98

2 29 4.2e-06 0.00028 21.4 4.5 1 23 88 110 88 110 0.98

3 29 0.0035 0.23 12.2 0.5 1 14 117 130 117 134 0.87

4 29 1.1e-06 7e-05 23.2 2.0 1 23 145 168 145 168 0.97

5 29 0.00033 0.022 15.4 2.0 2 23 174 196 173 196 0.97

6 29 1.8e-05 0.0012 19.4 0.6 2 23 206 227 205 227 0.97

7 29 3.7e-05 0.0024 18.4 0.0 1 23 230 252 230 252 0.97

8 29 0.0003 0.02 15.5 2.7 2 23 259 280 258 280 0.97

9 29 2.5e-06 0.00016 22.1 1.0 1 23 286 308 286 308 0.99

10 29 0.72 47 4.9 9.7 1 23 363 385 363 385 0.97

11 29 5.8e-06 0.00039 20.9 5.3 1 23 391 413 391 413 0.99

12 29 2.8 1.9e+02 3.0 0.3 1 11 420 430 420 434 0.89

13 29 8.7e-05 0.0057 17.2 2.2 1 23 448 471 448 471 0.96

14 29 0.00085 0.056 14.1 6.2 1 23 476 499 476 499 0.98

15 29 0.00019 0.013 16.2 0.9 2 23 510 531 509 531 0.97

16 29 3.4e-05 0.0023 18.5 0.5 1 23 534 556 534 556 0.97

17 29 4.9e-05 0.0032 18.0 1.5 2 23 563 584 562 584 0.97

18 29 5.9e-07 3.9e-05 24.1 3.1 1 23 590 612 590 612 0.99

19 29 0.00071 0.047 14.4 0.6 1 21 653 673 653 674 0.95

20 29 0.07 4.6 8.1 3.9 1 23 693 715 693 715 0.98

21 29 0.02 1.3 9.8 0.6 1 23 721 744 721 744 0.91

22 29 6.5e-05 0.0043 17.6 2.5 1 23 751 773 751 773 0.97

23 29 6.2e-05 0.0041 17.7 1.7 1 23 778 800 778 801 0.94

24 29 0.00022 0.014 16.0 2.7 3 23 808 829 807 829 0.97

25 29 6.2e-06 0.00041 20.8 1.2 2 23 839 860 838 860 0.97

26 29 2.1e-05 0.0014 19.2 0.1 1 23 863 885 863 885 0.97

27 29 0.0009 0.059 14.0 2.2 5 23 895 913 891 913 0.92

28 29 0.00013 0.0088 16.6 2.4 1 23 919 941 919 941 0.95

29 29 0.00013 0.0083 16.7 0.5 1 23 947 970 947 970 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.37	25	5.8	5.6	1	23	60	82	60	82	0.98
2	29	4.2e-06	0.00028	21.4	4.5	1	23	88	110	88	110	0.98
3	29	0.0035	0.23	12.2	0.5	1	14	117	130	117	134	0.87
4	29	1.1e-06	7e-05	23.2	2.0	1	23	145	168	145	168	0.97
5	29	0.00033	0.022	15.4	2.0	2	23	174	196	173	196	0.97
6	29	1.8e-05	0.0012	19.4	0.6	2	23	206	227	205	227	0.97
7	29	3.7e-05	0.0024	18.4	0.0	1	23	230	252	230	252	0.97
8	29	0.0003	0.02	15.5	2.7	2	23	259	280	258	280	0.97
9	29	2.5e-06	0.00016	22.1	1.0	1	23	286	308	286	308	0.99
10	29	0.72	47	4.9	9.7	1	23	363	385	363	385	0.97
11	29	5.8e-06	0.00039	20.9	5.3	1	23	391	413	391	413	0.99
12	29	2.8	1.9e+02	3.0	0.3	1	11	420	430	420	434	0.89
13	29	8.7e-05	0.0057	17.2	2.2	1	23	448	471	448	471	0.96
14	29	0.00085	0.056	14.1	6.2	1	23	476	499	476	499	0.98
15	29	0.00019	0.013	16.2	0.9	2	23	510	531	509	531	0.97
16	29	3.4e-05	0.0023	18.5	0.5	1	23	534	556	534	556	0.97
17	29	4.9e-05	0.0032	18.0	1.5	2	23	563	584	562	584	0.97
18	29	5.9e-07	3.9e-05	24.1	3.1	1	23	590	612	590	612	0.99
19	29	0.00071	0.047	14.4	0.6	1	21	653	673	653	674	0.95
20	29	0.07	4.6	8.1	3.9	1	23	693	715	693	715	0.98
21	29	0.02	1.3	9.8	0.6	1	23	721	744	721	744	0.91
22	29	6.5e-05	0.0043	17.6	2.5	1	23	751	773	751	773	0.97
23	29	6.2e-05	0.0041	17.7	1.7	1	23	778	800	778	801	0.94
24	29	0.00022	0.014	16.0	2.7	3	23	808	829	807	829	0.97
25	29	6.2e-06	0.00041	20.8	1.2	2	23	839	860	838	860	0.97
26	29	2.1e-05	0.0014	19.2	0.1	1	23	863	885	863	885	0.97
27	29	0.0009	0.059	14.0	2.2	5	23	895	913	891	913	0.92
28	29	0.00013	0.0088	16.6	2.4	1	23	919	941	919	941	0.95
29	29	0.00013	0.0083	16.7	0.5	1	23	947	970	947	970	0.97

Sequence Information

Coding Sequence: atgatattaCATAGTACAATTAAGTTGAAAAAAGGCTCCAATTCCAGGGAGGTCGACTGGATTAAAGAAGAACCCGATGAGAGCCCATACGAGTCCGTAAAGAAATCAATTGCTAGGGCATTGCAAACGCATATTAAATTCGACCAGCACGAAGAATACGAACAAGTCAACGGCAAGTATCGATGTTTGCagtgtaaaaaattattcattcgtAAAGAAAAATGCAAAGACCATTATCGTATACATTTGAACTTGCGGCCGTTCGAGTGCAGCCATTGCGAcaagaagttcaaacaaagcGCCACATTGCGCACGCATCAAAAGCTGCACGACCAAAAGCGCCGCACTTTCAAGTGCAACATTTGCGGCAAAGAATTCAAAACGGCGAATTATGCCAGACGGTGTTTGAAGATTCATTCGGGAGTGGTTGATCATAAGTGTCCGGAGTGCAATAAAGGTTTTTACGACAAAAGTTCATTGACAATTCATATTCAAAAAACGCACAATGCCGTCGAACAACAATGCCACATTTGCAGCAAAATCTACCCCAATAAGTATAGTTTCGAGTATCATTATCGATCGGTACACAACGCCAAACCTTCCACCATCGAATTGACCTGTGAAATTTGTGGAAAAGTCTACAACAATGTGAAACtctatcgaaaacatttacgaTCCCACGAGGGGTTTGCGTGTGAAGTGTGTGGGAAAATTTTCGGTTATGCGCAAGCATTGCGCAGCCACATGTTGATACACAGTGGCGAAAAACCATGGCAGTGTAATGTTTGtagtaaaagttttaataagaAACATATATTAACGGTACATTTGCGTACGCATACCAATGAAAAGCCGTACGAGTGTAAAGAATGTGGTAAAAGATTTACGCAACGTACTCCATTGGTGATTCATACACGGAAGCATACCGGCGAAAAGCCCTACCCGATCACCGCTTGGATTAAGGACGAAACGGTGTCTGACGACAATGAATCGGCCGATTGTCGCGAAAATAGTAAAGTGAAAGACGAACTAATGCCAAGCATTAAATTCGAAGAGCAAGAGCACTATGTCCGCGTCGGCAACAAGTTCTGTTGTATGCAATGCGAAAAAACATTTATCTCGAAAGGTCACTGCAAAGACCACTACAGACGCCACCTGAATCTCAGACCATATCAGTGCACTCAATGCCACAAAACATTCAAAGTGAAAACATCGCTAAACAAACATCAACAAGTGCATCAATCGTTTCGGCCATCATTCGAGTGCAACGCATGTCATAAAACGTACCGCGCGGCCAAAGACGCCAAGCTGTGCGAAAAAACGCACGAGAACGACTTCAGCTATAAGTGCACCGAGTGCAACAAGGGATTCCACTACAAAAGCACACTTATCGGACACATGGACGTCAAACACAACACCAACGAATATCAATGTCACATTTGtagtaaaattttctccaaCAAATACAAGTTCGACTATCACTTCCGCACTACGCACAATCCCAAAGAGAACAATGTTTTGGAGTTGAAATGTGAAATTTGCGCGAAAGTTTACAACAAAGTGAATAGTTTCAATCGACACATGCGATCGCATGAGGGTTTTCCGTGCGATATTTGCGGAAAAATTTTTAGATATGATCACGGCCTGAAGAGCCATCTGTTGATTCATCGCGGCGAAAGGCCGTGGGTGTgtgaaatttgtaataaaacatTCAACAAGAAACATATTCTCACCGTGCATATTCGAACGCATACGAATGAAAAACCGTATCAGTGTAAGGAGTGCGGAAAGTGTTATAGTCAACGCACGCCACTGGTCACGCATATGCGAACGCATACCGGTGAAAGACCGATCGACGAAAATCTGTGGGAAAACCAAGCGCACCCTCAAGTCCCTGAATCACGCCAAACAGAATCCGATGACTCAAAATCCGACGGTGATTTCACTCTATTTGAGTACCAGTgtgaaaaatgtacaaaaattttCGATACCGAAAAAAGCCTTTTTGAGCATCGATTAATGTGTGATATCAGTGTGATTGACGTGGGCGATGGTTACATACTGAAAACCGATGGTTACCACTGCAAAGGGTGCAAGGATAAGTTCCAAACCAAAGACGAATGGTTGACCCATTATCGGTCGCACTCGTTTAAAAAACGCTACCTGTGCGAATTGTGTTCCCTGTACTTTAAATACAGTTGGGACCTGAAAAAGCATAATATTTCGGTGCACGGAATGCAAGGGAGTTTCCACGTATGCAATGTGTGTGGAACCGGATTTAGTTTGAAGAAAACTCTGAAGAAACACCAGGAAAAGCACATCAGTCAAGGATACAAATGTAATCAATGTGCCAAAGCATTTATCACCAAATCGGAGTTGGAACAGCACAAAGATGAGCACCACGCCAAATCGGATAGTTTCTGTGACATATGCAACAAAATGTACACGACGAAATTCAACTATCAGTACCACTACAAAACTTTCCACGACACCACCTACGTGCCCCCCAAACTCACCTGTGAAATATGCCAAAAGGTGTACAATTCACGTgggaaattgaaaaaacatttaCGCAGCCACGAGGGTTTTGCGTGTTATATATGTGGTAAAATTCTTTCGACCAAGTCCAGCTTGCAAGACCACTTGTTGGTGCACAGTGGCGACAAACCATTGTCGTGCATTTTCTGCAATAAACGGTTCAGCAAAAAACGCACGTTGCAGGTGCATATCAGGCAACACACGGGCGAAAAACCGTATCAGTGCAACGAATGCGGAAAACAATTTGTGCAACGTACCAGTCTTGTGATTCACTGTAGAAACCATACGGGCGAAAGACCATATGTGTGCAATGTATGCGGAAAATCCTTTATGTATAAAGGAGTGTTGGTTTCGCATAAACGCAACAATCATAATGTTGCACAGgtcaattga
Protein Sequence: MILHSTIKLKKGSNSREVDWIKEEPDESPYESVKKSIARALQTHIKFDQHEEYEQVNGKYRCLQCKKLFIRKEKCKDHYRIHLNLRPFECSHCDKKFKQSATLRTHQKLHDQKRRTFKCNICGKEFKTANYARRCLKIHSGVVDHKCPECNKGFYDKSSLTIHIQKTHNAVEQQCHICSKIYPNKYSFEYHYRSVHNAKPSTIELTCEICGKVYNNVKLYRKHLRSHEGFACEVCGKIFGYAQALRSHMLIHSGEKPWQCNVCSKSFNKKHILTVHLRTHTNEKPYECKECGKRFTQRTPLVIHTRKHTGEKPYPITAWIKDETVSDDNESADCRENSKVKDELMPSIKFEEQEHYVRVGNKFCCMQCEKTFISKGHCKDHYRRHLNLRPYQCTQCHKTFKVKTSLNKHQQVHQSFRPSFECNACHKTYRAAKDAKLCEKTHENDFSYKCTECNKGFHYKSTLIGHMDVKHNTNEYQCHICSKIFSNKYKFDYHFRTTHNPKENNVLELKCEICAKVYNKVNSFNRHMRSHEGFPCDICGKIFRYDHGLKSHLLIHRGERPWVCEICNKTFNKKHILTVHIRTHTNEKPYQCKECGKCYSQRTPLVTHMRTHTGERPIDENLWENQAHPQVPESRQTESDDSKSDGDFTLFEYQCEKCTKIFDTEKSLFEHRLMCDISVIDVGDGYILKTDGYHCKGCKDKFQTKDEWLTHYRSHSFKKRYLCELCSLYFKYSWDLKKHNISVHGMQGSFHVCNVCGTGFSLKKTLKKHQEKHISQGYKCNQCAKAFITKSELEQHKDEHHAKSDSFCDICNKMYTTKFNYQYHYKTFHDTTYVPPKLTCEICQKVYNSRGKLKKHLRSHEGFACYICGKILSTKSSLQDHLLVHSGDKPLSCIFCNKRFSKKRTLQVHIRQHTGEKPYQCNECGKQFVQRTSLVIHCRNHTGERPYVCNVCGKSFMYKGVLVSHKRNNHNVAQVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -