Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292276.1:7495706-7510053[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.064 4.2 8.2 4.9 1 23 45 68 45 68 0.96

2 26 6.5e-06 0.00043 20.8 0.3 1 23 74 96 74 96 0.97

3 26 0.00028 0.019 15.6 1.1 1 23 103 125 103 125 0.98

4 26 1.1e-05 0.00072 20.1 0.4 1 23 131 154 131 154 0.91

5 26 5.4e-06 0.00036 21.0 7.3 1 23 159 181 159 181 0.99

6 26 8.8e-05 0.0058 17.2 4.1 2 23 191 212 190 212 0.96

7 26 8.1e-06 0.00053 20.5 0.3 1 23 215 237 215 237 0.98

8 26 3.6e-05 0.0024 18.4 1.5 2 23 244 265 243 265 0.97

9 26 3e-07 2e-05 25.0 0.4 1 23 271 293 271 293 0.98

10 26 0.0076 0.5 11.1 0.1 3 23 339 359 338 359 0.96

11 26 0.00098 0.065 13.9 1.4 1 23 365 388 365 388 0.93

12 26 4.7e-05 0.0031 18.1 0.5 1 23 393 415 393 415 0.98

13 26 3.1e-06 0.00021 21.8 2.2 1 23 424 446 424 446 0.98

14 26 0.00076 0.05 14.3 4.4 1 23 449 471 449 471 0.94

15 26 1e-05 0.00066 20.2 3.8 1 23 477 499 477 499 0.98

16 26 2.7e-07 1.8e-05 25.1 0.6 1 23 505 527 505 527 0.99

17 26 0.041 2.7 8.8 0.9 1 23 552 574 552 574 0.95

18 26 0.062 4.1 8.2 0.1 5 23 586 605 584 605 0.95

19 26 0.00045 0.03 15.0 4.1 1 23 610 632 610 632 0.98

20 26 1.1e-06 7.6e-05 23.1 0.9 1 23 638 661 638 661 0.98

21 26 9.3e-06 0.00061 20.3 2.5 1 23 666 688 666 688 0.98

22 26 0.00028 0.019 15.6 3.6 1 23 697 719 697 719 0.98

23 26 0.00017 0.011 16.3 1.6 1 23 722 744 722 744 0.97

24 26 3.6e-06 0.00024 21.6 0.5 1 23 750 772 750 772 0.98

25 26 8.5e-06 0.00056 20.4 4.6 1 23 778 800 778 800 0.98

26 26 0.00025 0.016 15.8 0.5 1 23 806 829 806 829 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.064	4.2	8.2	4.9	1	23	45	68	45	68	0.96
2	26	6.5e-06	0.00043	20.8	0.3	1	23	74	96	74	96	0.97
3	26	0.00028	0.019	15.6	1.1	1	23	103	125	103	125	0.98
4	26	1.1e-05	0.00072	20.1	0.4	1	23	131	154	131	154	0.91
5	26	5.4e-06	0.00036	21.0	7.3	1	23	159	181	159	181	0.99
6	26	8.8e-05	0.0058	17.2	4.1	2	23	191	212	190	212	0.96
7	26	8.1e-06	0.00053	20.5	0.3	1	23	215	237	215	237	0.98
8	26	3.6e-05	0.0024	18.4	1.5	2	23	244	265	243	265	0.97
9	26	3e-07	2e-05	25.0	0.4	1	23	271	293	271	293	0.98
10	26	0.0076	0.5	11.1	0.1	3	23	339	359	338	359	0.96
11	26	0.00098	0.065	13.9	1.4	1	23	365	388	365	388	0.93
12	26	4.7e-05	0.0031	18.1	0.5	1	23	393	415	393	415	0.98
13	26	3.1e-06	0.00021	21.8	2.2	1	23	424	446	424	446	0.98
14	26	0.00076	0.05	14.3	4.4	1	23	449	471	449	471	0.94
15	26	1e-05	0.00066	20.2	3.8	1	23	477	499	477	499	0.98
16	26	2.7e-07	1.8e-05	25.1	0.6	1	23	505	527	505	527	0.99
17	26	0.041	2.7	8.8	0.9	1	23	552	574	552	574	0.95
18	26	0.062	4.1	8.2	0.1	5	23	586	605	584	605	0.95
19	26	0.00045	0.03	15.0	4.1	1	23	610	632	610	632	0.98
20	26	1.1e-06	7.6e-05	23.1	0.9	1	23	638	661	638	661	0.98
21	26	9.3e-06	0.00061	20.3	2.5	1	23	666	688	666	688	0.98
22	26	0.00028	0.019	15.6	3.6	1	23	697	719	697	719	0.98
23	26	0.00017	0.011	16.3	1.6	1	23	722	744	722	744	0.97
24	26	3.6e-06	0.00024	21.6	0.5	1	23	750	772	750	772	0.98
25	26	8.5e-06	0.00056	20.4	4.6	1	23	778	800	778	800	0.98
26	26	0.00025	0.016	15.8	0.5	1	23	806	829	806	829	0.97

Sequence Information

Coding Sequence: ATGTTTGAGGATGTCAATGTTCGCTTGAtGAACGATGGTCAATTGGAATGGAAAATCGGCAACGAAAATGACGAACAGCAACAGACTGTGACGTTACGTGACGAGGAAATATACAAGTTGAAGCACAGTGGCTATCATTGTGCAGTTTGTGGGAAAATCTTTTTCCAAAAAGAATTATGTCGGCGACATTATCTGCGAATGCACATCGAATCCAGTGGATATCCATGCGAAATTTGCAACAAGATCTTTAAGTACAAGTGGAATTTGATAACGCATGCAAAACTGCATGATACCAATCGGCAAAAGTACACGTGTGAGATATGCAATCGCGAATATGCCACACCACAATCGTACAAAATGCATAAGAACAGGCACCTGAAGAACTATTCGTTCAAGTGCAATCAATGCGGCAAGGGATTTTATCAGAAAGCCGAGTTGAAAATTCACACGGATGCCGAACACAATGCCATCCGGTACCAGTGTCACATATGTAAAAAGACTTTCTGTAGCAAAGGGTATTTAACTGTGCATTATCGATCACATGATCCCAACTATGTACCTCCGGAGCTCAAGTGCCATATTTGTGGTAAAACGTACCATTCGTCCGATCTATTCCGGCGGCATGTGAAAGCCCACGAAGGATTTACGTGTGATGTTTGCGGAAAAACGCTCACCTCACAAATTAGTCTTAAGAACCATTTGTTGATTCATCGGGGCGAAAAACCACTGAGTTGCAACGTGTGCGGAAAATGTTTCAACAAACGTGCAATACTCAAAGTGCATATGCGAATTCATACCAACGAACGGCCGTACGAGTGCAAGGAATGTGGGAAACGATTTGCCCAGCGTAGTCCTTTGGTCATACATATGCGATATCATACAGGAGAACGGCCACGAATCAATCAAATCAAAGAATCACCGCGTGATTCGATTGATGGCGAAAACCACTGCATCGGTAGCAAATCAAAAAAGCCGCGAAAATCGAAAGTGGCCGTGGAAAAATCGAACGGGAATTGTTACATTTGCGGTAAAGAATACGGCAGTTTGCAATTGTTGCGGGAACACGAAAACGTGCACTTCAACGGAGTCGAATATGAATGTGACACGTGTAAAAAGAAGTTTGTtaataagtatattttaaagaatCACATCACCGCTAGGCATAGCCAAGTGAAGTTTCAGTGCGCGGAATGTTTGAAAGATTTTTCGTCGAAGGAATATTTGCTGAAACACGCGAGAATCCACGATCGAAACTATGTACCACCGGCGTACACGTGTACGACGTGTGGTAAAGTTTACAAGTCGACGTCGGAGTTTAATCGACACGTGAAATCGCACGAGGGATTTCCGTGTCATCAGTGTGGAAAGATGTTCAAGTATGCTGAGCGGCTAAAGCATCACAATTATGTGCATACAGGTGAACGGCCGTACGCGTGCACCTACTGTGATAAGAAGTTTCGGGTGAAAATGTATTTGTGCGAACATATTCGCACGCATACCAAGGAACGGCCGTACGTTTGTAATGTGTGTGGACAGAGATTTACGCAACGTAATCCACTGAAAGTGCATATGCGAACGCATACGGGCGAACGGCCgAATATTTCGTGTggtcaagaaaaaaattctgataTCGACACCACTGTCGTTAAGCaattcaaatgtattttttgtaagACCAAATATGCGGACAAATCTGCATGGAAAAACCACCTTGCTAGTCATACGAGTGCAACCACTGTAGGTCCCAACAAATGTATTTGTGACCAGGAATTTATAGAATCCGTCGATTTAATCAATCACATTGAAACGAACCACCCGATAAGTGCATACTTTTGTGACTTGTGTAGCGAACATTTTTCCagtttgtattatttaaaagtGCATAGACGACGACATGCGGGAAATTTGCACTATAAATGCAACGAATGTGGCTGGAAATTTATGCTGCAAAGCCAATTGAAAAGTCATATTCGTGTGAAACATGAAAAGGTGCGCTTTCCGTGTGATCGGTGttcgaaaaatttttgttcGGCCGGCAATTTGCGGGTGCACTATCGCACACATGACCCATTCTATGTGGTACCCACTTTCAAATGTGTTGCATgtgataaaatttgtaaaacgcAGTCTTTGTATAATAAACATTTACGGTCGCACGATGGATTTTCGTGTGACTTTTGTGGTAAAACATTCAAATTTGCTCAGAAACTTAAGGGTCACTTGTTGCAGCATACCGGCGAAAAACCTTTCAGTTGTGATGTTTGTGGAAAGAAATTTGCCCAAAAAGTTTATGTCAATGAACATTTACGTACACATACGAAAGAAAAGCCATTCGTTTGTAATGTTTGTGGAAgaaaatattcgcaaaaatgTACACTACGAACGCATATGCGTTATCATAGCGGGGAGTATCGGTTTACTTGTACCCTTTGTAAAAGTGGATTTGTTAGAAAAGCTGGTTTGGTTAAACATATGAAAAATGTGCATAATTGCACTTGA
Protein Sequence: MFEDVNVRLMNDGQLEWKIGNENDEQQQTVTLRDEEIYKLKHSGYHCAVCGKIFFQKELCRRHYLRMHIESSGYPCEICNKIFKYKWNLITHAKLHDTNRQKYTCEICNREYATPQSYKMHKNRHLKNYSFKCNQCGKGFYQKAELKIHTDAEHNAIRYQCHICKKTFCSKGYLTVHYRSHDPNYVPPELKCHICGKTYHSSDLFRRHVKAHEGFTCDVCGKTLTSQISLKNHLLIHRGEKPLSCNVCGKCFNKRAILKVHMRIHTNERPYECKECGKRFAQRSPLVIHMRYHTGERPRINQIKESPRDSIDGENHCIGSKSKKPRKSKVAVEKSNGNCYICGKEYGSLQLLREHENVHFNGVEYECDTCKKKFVNKYILKNHITARHSQVKFQCAECLKDFSSKEYLLKHARIHDRNYVPPAYTCTTCGKVYKSTSEFNRHVKSHEGFPCHQCGKMFKYAERLKHHNYVHTGERPYACTYCDKKFRVKMYLCEHIRTHTKERPYVCNVCGQRFTQRNPLKVHMRTHTGERPNISCGQEKNSDIDTTVVKQFKCIFCKTKYADKSAWKNHLASHTSATTVGPNKCICDQEFIESVDLINHIETNHPISAYFCDLCSEHFSSLYYLKVHRRRHAGNLHYKCNECGWKFMLQSQLKSHIRVKHEKVRFPCDRCSKNFCSAGNLRVHYRTHDPFYVVPTFKCVACDKICKTQSLYNKHLRSHDGFSCDFCGKTFKFAQKLKGHLLQHTGEKPFSCDVCGKKFAQKVYVNEHLRTHTKEKPFVCNVCGRKYSQKCTLRTHMRYHSGEYRFTCTLCKSGFVRKAGLVKHMKNVHNCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -