Snig001755.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- stc
- Assembly
- GCA_958496155.1
- Location
- OY292313.1:28922292-28931359[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 2.1e+04 -4.2 1.6 15 19 412 416 411 416 0.81 2 15 0.75 7.9e+03 -2.8 0.5 4 10 445 451 445 451 0.91 3 15 4.7e-05 0.49 10.7 16.2 3 18 461 476 460 477 0.91 4 15 2.3e-05 0.24 11.7 13.7 1 19 513 531 513 531 0.98 5 15 0.001 11 6.4 16.0 1 18 571 588 561 589 0.85 6 15 2 2.1e+04 -4.8 1.9 9 13 597 601 597 602 0.73 7 15 0.00063 6.6 7.1 20.8 4 18 638 652 631 653 0.87 8 15 2 2.1e+04 -4.5 1.6 5 10 682 687 682 687 0.90 9 15 0.00061 6.4 7.1 7.1 1 11 693 703 693 704 0.96 10 15 0.44 4.6e+03 -2.0 0.5 4 10 708 714 707 714 0.91 11 15 6.1e-09 6.4e-05 23.1 11.0 1 18 720 737 720 738 0.97 12 15 2 2.1e+04 -4.4 1.6 6 10 767 771 766 772 0.60 13 15 1.7 1.8e+04 -3.9 8.2 10 19 785 795 774 795 0.83 14 15 2.5e-09 2.6e-05 24.3 9.0 1 17 831 847 831 856 0.94 15 15 7.6e-05 0.79 10.0 18.1 1 19 863 882 863 882 0.97
Sequence Information
- Coding Sequence
- ATGGCCCACAGGAACGATCGTTTTCAAGGGGTTCCCAATTACTCAGACCAATCGGTGTATCTTGCAAATGCAGCTGTAAATGGGGATCCTTCAAATACATATACAAGTTATCAACAGACATATAACAACATTCCAGTAGAATATAGTTCgggaaattataataattattacgcTCCGGTAACGAATGAAACAACGTATAACTCGACGAACAGAATTTGGACAAATCCGCAGTATGAATCGTTTGACTCAAATCAAATGGCTGGACCTAGCAGATATCCAAATGTTGGTGTTACAAATGGAGGAATTATTAAATCTAATTTAACTCCAACGGCTAAGGAATTTACCCCCagcaattttcaatcaaataattCAAACTATAATGAACCACAAGTCGAGAGCAATAAGCATAATAATATAAGAGGAGCTGTTCCTAAAACTGCAACTAACAATGTAGGATCGAAATATCGAGGACCTAATAATCGAAGCTCTAATACTtattataatagaaataatttttctcgtTCGGGCAACTCGAGTCAGTATCAGAAAGACAGACCTCATACAGTCGCGCAAAGTTCACAATTTCAAAACGATCGATTTTATACGAATTCACGTCAGATACAAAGCAGCGATGGTGATAGCCGAAAACCGTTCTACCAAAACTCGAATAGACGGCCTAAGAAACCGGATTATTCTAGTTCAAATAAATACGATAAGCggtacaaaactaaaaattctcGAGAAGAAGATAGACCCCCACGAGATGATTACGCCGGTAAattatatgaaaagaaaaaaaatcgttatccAGATCAACCGGTTCAAAATGAGGAAAAGAGTACGTTTTCTGTTTTAAATCGCAATGAAAATCGTTATTATAATCGAGGAAATCGATATTATGGATTGGTTCGAAACACGCAAAAACCCGATAAAAATGAAACAGCTACTGAAAATCGCCAAGTAGTCAATTCAGAGCCTTCTAAAGAGACGAGCACCGATAATATTCTTGGAGATTCAGATGATGAAAGTGATGTGGACTGTGGTGTAGACAACCGAGGACAGAGGGAAGGTCTTATTAAACAAATTCTCAACGGGAACTTGGAATGTATGATTTGTTGTGAAAAGGTCAAACAAGATGTTTCGGTTTGGTCGTGTCAAAAATGCTTCCATATACTACATTTTAAATGTCTCTGCCAATGGGCAGAATCATCAAAGGCAACGAATGGTTGGCGATGTCCGGCGTGCCAACATGTTTACACGGAAATTCCGTCCATTTATTACTGTTTTTGTGGCCGAGAACAAGATCCGATGTACTCTTCTTCGATCCTACCACATTCGTGTGGAAAAATGTGTTTGAGGAAGAATCGAGGACCTTTGTGTACCCATTCTTGTCCTATTGAATGCCATCCAGGACCATGTCCTCCGTGCCTCACCGTAGTCGACAGATCATGTGCATGTGGTAAAGAAATAATTCCAGTTGTTTGTAAccatgataaaattttaagttgtggaaatatttgtgataaattgttaaaCTGTGGTATTCATCGTTGTACGCTCAAATGCCATGCAGAAAAATGTCATCCatgcaaagaaaaaatcaaactaaCTTGTTATTGTAACAAGGAATCAAAAACAGATTATTGTTCCAAGGAAACGTTGAACTCGACTAGTTATAGTTGTGGAGAAATTTGCGGTCAGCTATTAAAATGTGAAAATCATAATTGCACAAAAGTGTGCCACCCAGAGCCTTGTAATGAGTGTGAATTTTCTGTAACGAAAGTTCTTACTTGTCATTGTGGACAAACGCCTCTGACTCCTGATCAAGTTAGGAAATCATGTCTTGATCCAATTCCTTGTTGTGATAAGatttgttctaaaaaattaaaatgtggtCAACCCCATTGTCCTCATCTGTGCTCAAAAAAATGTCATGAGGGTGAATGTCCTCCATGTGAGCTTACGACCTTAGTGAGATGTCGATGTGGTCATATGGACCGAGAAGTTCCTTGTACTCAATTAACAGGACGAGCAGATGATGCACGATGTGAAAAGCGGTGTaacaaaaaacggTCTTGCGGTAAACATAAATGTAATGCTCTCTGCTGCATTGATATTGACCACGAATGTCCATTGATTTGCAATCGAATGTTATCCTGTGGACAGCATCGTTGTGAAATGAGATGCCACAAAGGCAGATGTTTACCTTGCTATCAgtcaagttTTGAAGAATTGTACTGTGAATGCGGTGCTAGTGTAATCTTTCCGCCAGTTCCATGCGGAACTCGTCGTCCTGAATGCCACCAACCATGTTCCCGAGTTCATAATTGTGACCATGAAGTTTTTCATAACTGTCACAGTGAACCTGATTGTCCTCCATGTACGGTACTCACTCATAAATGGTGCTATGGAAAACATGAGTTACGCAAGACAATTCCTTGTCATCAAGAATCGTTCTCTTGTGGATTACCTTGCGGAAAAGAGTTATCGTGCGGTCGACATAAATGTATAGCTGTTTGTCACGAAGGTCCTTGTTTGCCTGATGGGAAAGTTTGTACGCAACCGTGCACAACTCCTCGTTCAACCTGTGGACATCCTTGTGGCGTGCCTTGTCATGATGGACCCTGTCCTGATACTCCATGCAAAGAAACCgTCAAAGTAACATGCCAATGTGGCCATCGTTCAGCCACTAAAAACTGTGTTGATAACATTAAGGAATACCAGCGAATCGCTACTGCCATGTTAGCTAATAAAATAGCCGATATGCAACTGGGAGCTTCGGTGGATATCGGAGATATAGTTGGTAATCAAGCCAAGCgacaaagtttgaaatttttagaatgcAACGATGaatgtaaaataattgaaaGGAACAGAAGGTTGGCGATTGGATTGCAAATTCGCAACCCTGATCTGTCTGCCAAACTAACTCCGCGGTATTCAGATTTTCTTAAGAATTACGGAAAAAAGGATACACGTTTTTGTCAGCATATTCACGACAAATTGACTGAACTTGTTCAACTTGCTAAACAGtcaaAGCAAAAATCGCGGAGTCATTCATTTGAATGTATGAATCGAGAAAAGCGGCAATTCGTTCATGAATACTGTGAACATTTTGGATGTGAATCGGTAGCTTATGACAATGAGCCGAATCGAAATGTTGTGGCTACAGCCAATAGGGATAAGGCTTGGTTACCAAGTTATagtttattggaaataattcaAAGAGAAGCTGGTCAACGTAAGGTCCCTGGTCCGATGTTACGTGCGACGCGACCAGCCACTGCTCAACCCATCTCTTCGCAAAGCTTTTCTGTACGACTATCAAGTCGAGATTCAACTTCGACACGAAACGAAACGCCTCCATATTCGGCTCCAGCACCTTCCACTCTCCCCGAAGAAGAAATCGATTATTTCAATAATCCTCCGGTTtag
- Protein Sequence
- MAHRNDRFQGVPNYSDQSVYLANAAVNGDPSNTYTSYQQTYNNIPVEYSSGNYNNYYAPVTNETTYNSTNRIWTNPQYESFDSNQMAGPSRYPNVGVTNGGIIKSNLTPTAKEFTPSNFQSNNSNYNEPQVESNKHNNIRGAVPKTATNNVGSKYRGPNNRSSNTYYNRNNFSRSGNSSQYQKDRPHTVAQSSQFQNDRFYTNSRQIQSSDGDSRKPFYQNSNRRPKKPDYSSSNKYDKRYKTKNSREEDRPPRDDYAGKLYEKKKNRYPDQPVQNEEKSTFSVLNRNENRYYNRGNRYYGLVRNTQKPDKNETATENRQVVNSEPSKETSTDNILGDSDDESDVDCGVDNRGQREGLIKQILNGNLECMICCEKVKQDVSVWSCQKCFHILHFKCLCQWAESSKATNGWRCPACQHVYTEIPSIYYCFCGREQDPMYSSSILPHSCGKMCLRKNRGPLCTHSCPIECHPGPCPPCLTVVDRSCACGKEIIPVVCNHDKILSCGNICDKLLNCGIHRCTLKCHAEKCHPCKEKIKLTCYCNKESKTDYCSKETLNSTSYSCGEICGQLLKCENHNCTKVCHPEPCNECEFSVTKVLTCHCGQTPLTPDQVRKSCLDPIPCCDKICSKKLKCGQPHCPHLCSKKCHEGECPPCELTTLVRCRCGHMDREVPCTQLTGRADDARCEKRCNKKRSCGKHKCNALCCIDIDHECPLICNRMLSCGQHRCEMRCHKGRCLPCYQSSFEELYCECGASVIFPPVPCGTRRPECHQPCSRVHNCDHEVFHNCHSEPDCPPCTVLTHKWCYGKHELRKTIPCHQESFSCGLPCGKELSCGRHKCIAVCHEGPCLPDGKVCTQPCTTPRSTCGHPCGVPCHDGPCPDTPCKETVKVTCQCGHRSATKNCVDNIKEYQRIATAMLANKIADMQLGASVDIGDIVGNQAKRQSLKFLECNDECKIIERNRRLAIGLQIRNPDLSAKLTPRYSDFLKNYGKKDTRFCQHIHDKLTELVQLAKQSKQKSRSHSFECMNREKRQFVHEYCEHFGCESVAYDNEPNRNVVATANRDKAWLPSYSLLEIIQREAGQRKVPGPMLRATRPATAQPISSQSFSVRLSSRDSTSTRNETPPYSAPAPSTLPEEEIDYFNNPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -