Snig001320.2
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- GATA-B
- Assembly
- GCA_958496155.1
- Location
- OY292313.1:20854493-20859099[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-18 9e-15 54.2 3.2 1 34 20 52 20 54 0.97 2 2 1.8e-18 5.4e-15 54.9 5.2 1 35 139 172 139 173 0.98
Sequence Information
- Coding Sequence
- ATGTCCTTATTGAACAATACTGttGAGGCAGCCGAGTATTATACAGAAGGACGGGAATGTGTAAATTGTGGCGCGATTTCAACACCATTGTGGCGTCGCGATGGTACAGGACATTACTTATGCAACGCCTGTGGTCTCTACCATAAGATGAATGGGATGAATCGTCCTCTTGTGAAACAGCCACGTCGTTTGGTACGACTACAACGATTCACTCTAGGATATTTAGTAGCAGTGAAGTTAACGAGAGTCGTTTGCGTTTCAGTGGCTTCGGATCCATCACATGCTTCCACTACAGGGGATTTCTACAAAGGCTACTATGGGTATAATGGAGGGCCGCGTACTACCCCTTCTTTGCACGATCCCGCCGAAAAATCAAGTCGGAGATTGACGGCTACTCGCAGAGTAGGAATGTTATGTACGAATTGCCGTACACCAACGACATCCCTTTGGAGGCGTAATGTGAACGGTGAACCTGTTTGTAATGCATGTGGTCTTTACTATAAATTGCATGGCGTTAACCGTCCACTAGCTATGAAAAAGGATAGCATTCAGACAAGGAAACGTAAGCCCAAAGGTAGTAACCCAACAACTCCTCCTAATAAAAGACTTAAAATGGAAAACAATACTACAGAAGATTCTTACACACATCATGTGGACACTCGTAACTACAACAATCCAATCATAATTCCAAGATTTTCCGCCGACTCGAATTCAAATCAAACCACTAACCACCATCAGCAGGCGCAtcagcaacaacaacaaaattcgCCCTCGTATTTACACAACCCACAATCACCAAATACGACGTCAGTACCGGTTTCTTATTCCAACTACGATCACACATTTTTACAAGTGCATGGTAGTCAATCAATATCGCCCAAATTAGAGCCTGATGTATCACCACGAGGATCACCTAGTATCCTTCATCAACAAGGATCGCCTGAAGGACATCCCGACCATTTAGAATCACCAAACAttgttaataacaataatacaaACAAAGTTATAATGGGAAATGGCGATTCTGTTGGTGGATCACCTCTTCATATTCAAGACCGGCCGTCAGTTGTATCGTTGTCAACTTAA
- Protein Sequence
- MSLLNNTVEAAEYYTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLVRLQRFTLGYLVAVKLTRVVCVSVASDPSHASTTGDFYKGYYGYNGGPRTTPSLHDPAEKSSRRLTATRRVGMLCTNCRTPTTSLWRRNVNGEPVCNACGLYYKLHGVNRPLAMKKDSIQTRKRKPKGSNPTTPPNKRLKMENNTTEDSYTHHVDTRNYNNPIIIPRFSADSNSNQTTNHHQQAHQQQQQNSPSYLHNPQSPNTTSVPVSYSNYDHTFLQVHGSQSISPKLEPDVSPRGSPSILHQQGSPEGHPDHLESPNIVNNNNTNKVIMGNGDSVGGSPLHIQDRPSVVSLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350141;
- 90% Identity
- -
- 80% Identity
- -