Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292318.1:43485837-43492907[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.14 11 6.9 0.7 3 23 253 274 252 274 0.93

2 19 0.0034 0.27 12.0 0.1 1 23 338 361 338 361 0.94

3 19 0.41 34 5.4 0.4 3 23 369 390 367 390 0.93

4 19 4.1 3.3e+02 2.3 0.2 1 23 531 554 531 554 0.89

5 19 1.8 1.5e+02 3.4 0.6 2 23 562 585 561 585 0.87

6 19 0.097 7.9 7.4 0.3 2 23 623 645 622 645 0.96

7 19 1.3e-06 0.00011 22.7 1.1 1 23 652 674 652 674 0.98

8 19 0.73 59 4.6 0.9 1 23 750 774 750 774 0.95

9 19 0.0062 0.5 11.1 6.1 1 23 777 800 777 800 0.96

10 19 0.0011 0.088 13.5 2.2 2 23 807 829 806 829 0.96

11 19 0.00026 0.021 15.5 3.8 1 21 932 952 932 953 0.95

12 19 0.00044 0.036 14.7 1.7 2 23 965 987 964 987 0.93

13 19 0.016 1.3 9.9 4.1 1 23 990 1013 990 1013 0.96

14 19 0.28 23 5.9 0.3 1 23 1019 1041 1019 1041 0.95

15 19 0.53 43 5.1 1.4 1 23 1045 1068 1045 1068 0.95

16 19 0.0067 0.54 11.0 0.3 2 23 1075 1097 1074 1097 0.95

17 19 0.56 45 5.0 2.0 3 23 1107 1128 1106 1128 0.94

18 19 0.17 14 6.6 0.6 3 23 1252 1273 1250 1273 0.95

19 19 0.067 5.4 7.9 1.0 1 23 1286 1308 1286 1308 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.14	11	6.9	0.7	3	23	253	274	252	274	0.93
2	19	0.0034	0.27	12.0	0.1	1	23	338	361	338	361	0.94
3	19	0.41	34	5.4	0.4	3	23	369	390	367	390	0.93
4	19	4.1	3.3e+02	2.3	0.2	1	23	531	554	531	554	0.89
5	19	1.8	1.5e+02	3.4	0.6	2	23	562	585	561	585	0.87
6	19	0.097	7.9	7.4	0.3	2	23	623	645	622	645	0.96
7	19	1.3e-06	0.00011	22.7	1.1	1	23	652	674	652	674	0.98
8	19	0.73	59	4.6	0.9	1	23	750	774	750	774	0.95
9	19	0.0062	0.5	11.1	6.1	1	23	777	800	777	800	0.96
10	19	0.0011	0.088	13.5	2.2	2	23	807	829	806	829	0.96
11	19	0.00026	0.021	15.5	3.8	1	21	932	952	932	953	0.95
12	19	0.00044	0.036	14.7	1.7	2	23	965	987	964	987	0.93
13	19	0.016	1.3	9.9	4.1	1	23	990	1013	990	1013	0.96
14	19	0.28	23	5.9	0.3	1	23	1019	1041	1019	1041	0.95
15	19	0.53	43	5.1	1.4	1	23	1045	1068	1045	1068	0.95
16	19	0.0067	0.54	11.0	0.3	2	23	1075	1097	1074	1097	0.95
17	19	0.56	45	5.0	2.0	3	23	1107	1128	1106	1128	0.94
18	19	0.17	14	6.6	0.6	3	23	1252	1273	1250	1273	0.95
19	19	0.067	5.4	7.9	1.0	1	23	1286	1308	1286	1308	0.97

Sequence Information

Coding Sequence: atggaaaatgttaCATCGTCGCCGACGTCGTCATCACCAGCATCATTACATTTGTCGTCATCGATTTCCCCCGTATGTCGCCTGTGTGGCAAGAACGAATTTCTCCAAATCAATTTGTTCAGTGACGAATCCAAAAAACGAGATTTAATCGTCAAAATCGAAACATGTCTATCGTTAAAGATCAAAACTGGTTCATCCCCATCAAGTTCGATATGTTATCGATGCATTACGAGCGTGGAAAATTTCTACGAATTTTATCGCACCACCATCGAATCCAGTAAATATTTAGAACACACGGCGAAGGAGCCGCTCGTGTTACATGCCGAGGACATTGGgtcaaaaattaatatcgaAATACAGTGCGATATTGACGAAAAATGTGAAAAGTACGACAAGAGTACATCGACCGACATCATCAAATGTTACGTATGTTCCACTCCTGTGACCTCTTCGTGGCGCAACGCCACCTACACATCAACCCTCGAACCGCTGGTCGACTACGATCAAAGTGACTCCGAATCGATCGATTCGATTCCAATTTTCGATCGAACCGATCGTTTCAGCaatgttttaaacgaaattttaatCCGTAAAAAGCGTAAAGCGAACGagtcaatcgaaaattccaatAAGAAACGACGAAAAGTCGAGGAGGTGAAAGTCGAGAAAGTGGTCAGTACTGGTCGTAGAAAGAATAAGCGACCGCGTCGTTGGTGTGAAGAttcacaaattgaaaatttcccgGAATTCGAGTCGTGTTTGTTGTGTAACGTAATATGTGAAACTCGCGACGAGCTGAGCAGGCATTTGCAAGATGTCCACGGGTTGGAATCGAAAGAAATTTTCGATCCACGTTTTATCGTGAACGAGGCACCGTCGACTGATATAAATCCGGCTTGGAAGCATATGAACTTGGAACAAATCTCGGAGGGTTTATGTCGGGAACGCGGCTATTTTGCCGATAACAATGTGGCGATCAATAACAATTTGCAAGAGACAACACCGTCCGAATATCTATGTGAGATTTGTGCGAGAGACTTCAACGACCGTGCAAGCCTCTGGCTCCATCTACGAGCCACACATCCAAAACACGCGAGTCTCGCGTGCGGAATTTGCCTCAAGCTAACAAACAGTTGGGAACAACTGGCACAGCACACCCAGCACATGCATAATCCGGATAAACTGACCGTGGCCGAGATTCGAAAATACTATTGCACGATTTGTCTGCGACAGCACGACTCGAAGAAAAAGCTTCTGAACCATGTGCACGTGCACGACTTTTTGTTGGACGCGTATAAAACTAGCGGAGTGCCGTTCACAGCTGAGGGCTtcgttaaaatgaatttttcatccAATGACGAGAACGGGGATCCGTTACAAATGAATGAAAGTCTTGCTCGGTCCTATTCGAGAGAAATTGTTAATAATGAACCCAACGAGCGGTTCTTTAGGAAAAATCAGTTTAACGACGAAGAAGataaatcACTTCAAGGTGATTTTGATGAGTCAATCACGAACAACTATCAAATGTTCTCGGAGGGGGTTGAAAATAATCATAGTcaaaaagTTCCTCGAAATTATACATTGAATTATTGCTGTGATTGGTGTACGGCGGTTTTATCAACGAAATGGGATCGTTGGTTGCACGTGGCCAATGAACATGCACCCAATAATGAGGCCTTGCGTTGCACCGTTGGCAATTGCCAAAAGGTCTTTGTCACGGAAGCGTTTCGAATAGAGCATGAACAACATCACGACATGCAAGGAGAAATTCCAAATTCGTGTGAGGTGTGTTGTAAGCTATGGAACACCCGtgtcgatttttacaagcatatGATGGGCGTGCATCCCTTGGCCGTGCCACTAGTCTGCGGTGTTTGTCTCAAGATTTTCCAAAACGTCAAAGGACTGCATGCTCATGTCCAAACCACCCACACACCGCTACAGGGTGATTTTGTTTGCGACATTTGTGGTCGCAGTTATTCaaacaaatcgaaaatgttaCGTCATCGCCGCATCCACGGCACCGTCGACCTGTCAGGCCGTTCCGAACTTGAAAACATTCCACTAAACAATCTAAAACCAACGGCATCGAAACGAAAAACAAAACCTCAAAATCTCACGACCCCATTATCGATTTTCAACAATAAACATCTCGATAGTTTAACGAAGAATCCATCAAGCGCCTCGTCGTTACGTTCCGACTCGGAAACAGAACAAGTACAAAACGAgagaaaaatcgaaaatttcatcTGTAAGGAGTGTAACGatattaaatttgataatttcGATGATTTCTCGACGCACAAAAGACTCGTGCATCAGATGTTCCATTGCGATTTATGCGCCAAGTCGTACGGCCGAAATTCGCATCTTTGGAAACACGTAAACCGTTGCCATAAGGGCAATGCTTTAGTCACGTGCCAGCTCTGTTTTAAGACATCCGCATCGAAATATCATTTACAACAgcatattaataaaattcattcaGTCAAGTTAAAGACTAAGAATAGTTTAGAGACACGATCGATTTCCCCCACATCCTTATCGGTTGATAGTTTCTTAGATCGTAAAATCGATGGATTTAATTTCGATAGTGTAAAGCAAAGCTTTTTGCGTCAGGAAATTTTAGAGCGAAATCGTGAGAAGGAGCAGGTCAATGATTTTGACGAGGAGGTTCACCTACCGGAAACTAATGGCGAAATGGTGACCCCTCCCGATGAAATTGATGTGAAAAGCGAACTTTTTACTAGTATTATAACGAATTACAATCCTCCAATTTCTAGTGGGGCGTATAAATGTAACAAATGTTCGAAAGGTTTTACCAAACGATATTTGTTGAAGAAGCATAAGAAAAATTGCCGACCGCGTCTGCAAAAGGACTTATTAACACGGTGTAAGACATGCGAACGGATCTTTAAAGATCGACAAAGTCTACAAAAGCACTTGGCCAACTACCATTCCGAGTTTAAGTGCCATCTATGTGAGCTTACGTTCCCTTCAAAGTGTGAAATTATCACACATATTCGTTTCACCCATCCAAAACATTCCGATTTTGTATGTGAACAATGCGGACAGATTTTACGTTGCAAAGCCGATTTATTGGCACATCGTCTCGACCATCGTAACAGCCACATTTGTCAGTTCTGCGGTGATAATTTAAcgtcaaaaatgaaattaaaaatgcacATACTGAGTTTGCATCGGAAAATTTTGTCGTTGAGCTGTGGAATTTGTTTGAAGATATTCGCGACTCAACATGTCCTACGCGATCATGTACGACTAGTACATTTCCAGGACACACGACATGAAAATGCGTGTTCGGTCTGCGGTAAGAAATACGGCTCAAAATGGAAATGTTTCGATCACATCAACAAATCGCACGGTAAAATATTCAAACCGTGTAAATTGTGTTTGGCTGTATTCGAGACCGACCAGCAAATCCAAGAGCATTTCATTCAAGTCCACGGCGGTTTTGACAAGTCATTCGAAACGTCCACCCCGGATATCAAATCGATCGAAAAGCCATCAATCCCAAAAATCACGTTAACATCAAACAAAAACGATTCCGGACCGAGTTATtcgatcaaaacacacaaagaCTTTCACAAGCTACAAGGCACCCCAAAACGCACGGTCTACGAAGATTCCGATTCGCCATCTATGTGTGAGATTTGTATGAAAACCTGGCCGGCAAAAAAACATCTCTGGCAACATTACATCCGGTGTCACAAAGAAGCCGCCGCAACAATTTGTGgcatttgtttgaaatttttccatTCCTATCCCGAACTAAGTGTAcacttagaaaaaaatcatcaaaacctCCTGCATGGTCAAGGTTTCGGTTCCAATTTTATTTGTAAGATTTGCGGCCGTTATCACAATGCCAGCTCGAAACTGAAACTACACATGGCGATTCATGTGAACTACAATAATTTCGTCGAAGTGAAAACCGAGAATTTCATGGACATGGATGATGTCCATAAAGAAAGTTCTCCAAGCAGTAGCAGTTCTAGTACTAGTAGCAGCAGTAGTAGTAGTAGTGGCAGCGATAGTTCCAGTAGTAGTAGTTCCAGCAGTGATTCATCTTCGTCAAGTCAAAATTCGTCGTCGGCCTTCCGAGGATTCGATTCCAGTGAAATCAAGGAAAGTGTCCATTACTCTCGACGAGTCTCAAACATTCTACGTTACTATCCCGATCAGGAGGAAGCACCAAGTGATTGCGATTCAGAAGATGAACGTCAAAAACTCCTGTTAAAAATGTCTCCATTAAGTGTCCATGGTGATCAATCTGAAGAAGAAGaagacgacgacgacgacgacgacgaagAGGCGACATTAGAACCTGAAAATGAGGAATATAGCGATTCAGAAGACGATGAACCCTCGTCCCCGGTTAATGATTGGGAAGAACAGGAATCGATCAACGATAGCGACGAAGACGACTATGAAGATGACGAGGAAATCGAAGAAGTGGACAACGACGACGACGAGGAAGAGTACGAAGAACAAGCCGATATTTCAATCGATGATGTATCATCGTATGGGGACGCGATTGAGAGTGAAAATCTTGAacggaaaatgttaaaaaatatgctCGTTGAAAATGACATAAGTCAAGTGGAATATCAAGAGTTAAATAATGCATGA
Protein Sequence: MENVTSSPTSSSPASLHLSSSISPVCRLCGKNEFLQINLFSDESKKRDLIVKIETCLSLKIKTGSSPSSSICYRCITSVENFYEFYRTTIESSKYLEHTAKEPLVLHAEDIGSKINIEIQCDIDEKCEKYDKSTSTDIIKCYVCSTPVTSSWRNATYTSTLEPLVDYDQSDSESIDSIPIFDRTDRFSNVLNEILIRKKRKANESIENSNKKRRKVEEVKVEKVVSTGRRKNKRPRRWCEDSQIENFPEFESCLLCNVICETRDELSRHLQDVHGLESKEIFDPRFIVNEAPSTDINPAWKHMNLEQISEGLCRERGYFADNNVAINNNLQETTPSEYLCEICARDFNDRASLWLHLRATHPKHASLACGICLKLTNSWEQLAQHTQHMHNPDKLTVAEIRKYYCTICLRQHDSKKKLLNHVHVHDFLLDAYKTSGVPFTAEGFVKMNFSSNDENGDPLQMNESLARSYSREIVNNEPNERFFRKNQFNDEEDKSLQGDFDESITNNYQMFSEGVENNHSQKVPRNYTLNYCCDWCTAVLSTKWDRWLHVANEHAPNNEALRCTVGNCQKVFVTEAFRIEHEQHHDMQGEIPNSCEVCCKLWNTRVDFYKHMMGVHPLAVPLVCGVCLKIFQNVKGLHAHVQTTHTPLQGDFVCDICGRSYSNKSKMLRHRRIHGTVDLSGRSELENIPLNNLKPTASKRKTKPQNLTTPLSIFNNKHLDSLTKNPSSASSLRSDSETEQVQNERKIENFICKECNDIKFDNFDDFSTHKRLVHQMFHCDLCAKSYGRNSHLWKHVNRCHKGNALVTCQLCFKTSASKYHLQQHINKIHSVKLKTKNSLETRSISPTSLSVDSFLDRKIDGFNFDSVKQSFLRQEILERNREKEQVNDFDEEVHLPETNGEMVTPPDEIDVKSELFTSIITNYNPPISSGAYKCNKCSKGFTKRYLLKKHKKNCRPRLQKDLLTRCKTCERIFKDRQSLQKHLANYHSEFKCHLCELTFPSKCEIITHIRFTHPKHSDFVCEQCGQILRCKADLLAHRLDHRNSHICQFCGDNLTSKMKLKMHILSLHRKILSLSCGICLKIFATQHVLRDHVRLVHFQDTRHENACSVCGKKYGSKWKCFDHINKSHGKIFKPCKLCLAVFETDQQIQEHFIQVHGGFDKSFETSTPDIKSIEKPSIPKITLTSNKNDSGPSYSIKTHKDFHKLQGTPKRTVYEDSDSPSMCEICMKTWPAKKHLWQHYIRCHKEAAATICGICLKFFHSYPELSVHLEKNHQNLLHGQGFGSNFICKICGRYHNASSKLKLHMAIHVNYNNFVEVKTENFMDMDDVHKESSPSSSSSSTSSSSSSSSGSDSSSSSSSSSDSSSSSQNSSSAFRGFDSSEIKESVHYSRRVSNILRYYPDQEEAPSDCDSEDERQKLLLKMSPLSVHGDQSEEEEDDDDDDDEEATLEPENEEYSDSEDDEPSSPVNDWEEQESINDSDEDDYEDDEEIEEVDNDDDEEEYEEQADISIDDVSSYGDAIESENLERKMLKNMLVENDISQVEYQELNNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -