Snig004192.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292314.1:7337796-7342234[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.23 19 6.2 2.0 2 23 81 103 80 103 0.91 2 13 4.9 4e+02 2.0 0.2 3 21 165 182 164 183 0.85 3 13 0.0029 0.24 12.2 1.5 1 23 218 241 218 241 0.96 4 13 7.1 5.7e+02 1.5 0.5 2 19 253 270 252 273 0.86 5 13 0.32 26 5.7 1.0 2 19 281 298 280 301 0.92 6 13 0.0072 0.59 10.9 0.3 1 23 314 336 314 336 0.96 7 13 0.0023 0.19 12.5 1.8 1 23 339 361 339 361 0.97 8 13 0.0018 0.14 12.8 1.8 2 23 433 454 433 454 0.97 9 13 0.0019 0.15 12.8 6.5 2 23 499 521 499 521 0.97 10 13 0.068 5.5 7.9 2.9 1 23 610 633 610 633 0.90 11 13 0.00022 0.018 15.7 0.3 1 23 651 673 651 673 0.97 12 13 0.0031 0.25 12.1 1.9 2 23 727 749 726 749 0.93 13 13 0.00038 0.031 15.0 1.7 2 23 773 795 773 795 0.95
Sequence Information
- Coding Sequence
- ATGGCCAAAAAACAGAACGGAACCGATTCGATCTACAACAATTGGCGGgcgGAAATTTTTGCTACGTTAAAATCGGGACATCACGTCGAAGAAGACGATTACGAGAAATACGCCTCCGACAATGATCTACAAGACGAGGACGATGAAATCTACTCAAAACCAGCGGTGAAATTTCAAAATGGCCTCACCATCATAGCGCTGCCCAATGTGAAAAAGGACAATAAAGATGCGACACCCAAATCATGTCGTATTTGTCACAAACAATTCGAGAATCTCAAAAGTGCACTGAGCCATGAGAAATATGCGCATACGCGCGCCGAAATCTTGACCATCGACTTGACCGACAGTAAAAAACTGCAAGAATACAACAATGATGTGGTTCGTAACATTTTAAAGACGAAAACTTGTTCGTTTTGTCAGAGGAAAATACCAAAATCGCACAATATGTTGTTCCACTTACGTTCGGTCCACATGAAAATCCCTACGTCCTTCTGCCATTATTGTAACATTCGACTACCTCCTGTTGAATACAAGGCACATATTAAAAACTGTCCCGTTCGAAATGCGGACTTCTCGAAAAAAATAGTCCCGAAAGAAGAAAACGTCTCGACAGCATCGCCTCCAGAACCGACCAATTGTAAAAAGATGCTGTACAAATGTCGGAAATGTGACGAAAAATATCCTTATAAAAAGGCGTTTTATGTCCACATCCAGGAAAATCATATACTGCCCAACAATGCGACCAACTGTCCGATTGAATGTGAACATTGTCTCAGAAACTTTTTATATCACGCCGATTATCGAGCCCACTTCTCAATCGACAGTTGCCTACTGCAACTGGTCTGCGAAAATTGCAACCAGTTCTTCGAAACAATGCGTCTCTTCCGTGTACATTCATGCGAAGAAGTTGAAGTTGCCGAAGACAAGTCTGACTATAAATATTCATGTTCCGAATGTGGCTCCCTCTTCAAAACGCTCGAGCAATGGACTGATCATCGTGCGAATCATCTCAGCTACAACTGCACTATATGTAAAACGAAATTCTTCGACTATCTCCAGTTGAAAGAACACCTCAAAGCCCATTCAGTAAACTGTGTTAACAAGCCGAAAGTAACAGCGATGCAAGAGGATTATGACGATGATTCAACCCCTCAACGGTCTGAAGATGAAGATGATTCTTATATGGCTAGGGGATATGAAAAAGATGAGGATTATGAAGATGAACGAAGGACAGAATCTCCGAATTATGAACCTTTTGACAAGGCTGCATATCTGGAAAAGTATCCGAATGCTCGAGAGTGTAATATCTGCCATAAATTTTTATCAGGAAACGCTTCCCTGTACAAACATAAACGGATACATAAACGAGCTGCACGACTTGAACAGGAGATGTACGAGTCGCTTGATGACAACCAGATGGCGGCACTGAAAAGCATCCAATTGCCAGGATTAACGGTAACATCCACGTCGATCAATCAACGATTAAAAACCGAGGAGTGTTGCGTTTGTAAGAATTTCTTCTCGACCAAGGATAGTCTACGTCATCATCTACGAACCCAACACAAAGACTTCTACTATTCCAATAAACTGTTCCAGAGTAACATGTTTACAAGACCGAACTTAGAAAGTCTATTGAAGAAAAACACGGCCTTCAATCCATACAATTCGAATTCCAAATCAACAATGGCTCATAGCAGTCGTGACGAGTACAACGATGAACGTTTACGACGATCGTTAAAACTTAAGTACCAACACAAAAATTCGGTTCTTTTCTCGAAATTTACGAATCGAAAGTTCGACATGCCAATGAAGAAGGGTGGTAATTTTCATAAGTGTGAGCTGTGCGGTAAGAAATACGTGAAGAAACGTTCGATTGTTTATCATAAGATCAATTTTCATAAGATGAGTGAGGTGGAGGCCATTACAGGGTCGCCAAAGGCGACCAAAACCTACACCTGCCAGGAGTGTAGTAAAGTCTTTTATACATTACCAAGTTTGAATGGTCACCTTTCATGGCATGATCAGATGAAAAAAAACGCTGAAACCAGCAAAGGAAATAATGCGTCGAATGGAATTGATTGTGCGTTGTGTGGCACGCATCATCATAACATTACGGAGCTGCGCCAGCATATTCTCAGTGCACATAAATCACAGACCGAGACCGTGGAGAAAAATTGCGTTTGTAAGCTGTGTAAAATGGTGTTCAAAGACGACGAGAAACTCACGGAACATATGGAGCAGTTCCATAAAGATGACGAAACACCGACAAAAACTCCGATCATCACAGTGACTGATCTGAAGAAGTTGGTAAATCCTACATGTTCCATTTGTAAGATCACATTCGAGACCAAATCTGCGTTGCAGGAGCACGCATTAAAGTGCCACACGAGCAAATCTAGTAAATCGTAA
- Protein Sequence
- MAKKQNGTDSIYNNWRAEIFATLKSGHHVEEDDYEKYASDNDLQDEDDEIYSKPAVKFQNGLTIIALPNVKKDNKDATPKSCRICHKQFENLKSALSHEKYAHTRAEILTIDLTDSKKLQEYNNDVVRNILKTKTCSFCQRKIPKSHNMLFHLRSVHMKIPTSFCHYCNIRLPPVEYKAHIKNCPVRNADFSKKIVPKEENVSTASPPEPTNCKKMLYKCRKCDEKYPYKKAFYVHIQENHILPNNATNCPIECEHCLRNFLYHADYRAHFSIDSCLLQLVCENCNQFFETMRLFRVHSCEEVEVAEDKSDYKYSCSECGSLFKTLEQWTDHRANHLSYNCTICKTKFFDYLQLKEHLKAHSVNCVNKPKVTAMQEDYDDDSTPQRSEDEDDSYMARGYEKDEDYEDERRTESPNYEPFDKAAYLEKYPNARECNICHKFLSGNASLYKHKRIHKRAARLEQEMYESLDDNQMAALKSIQLPGLTVTSTSINQRLKTEECCVCKNFFSTKDSLRHHLRTQHKDFYYSNKLFQSNMFTRPNLESLLKKNTAFNPYNSNSKSTMAHSSRDEYNDERLRRSLKLKYQHKNSVLFSKFTNRKFDMPMKKGGNFHKCELCGKKYVKKRSIVYHKINFHKMSEVEAITGSPKATKTYTCQECSKVFYTLPSLNGHLSWHDQMKKNAETSKGNNASNGIDCALCGTHHHNITELRQHILSAHKSQTETVEKNCVCKLCKMVFKDDEKLTEHMEQFHKDDETPTKTPIITVTDLKKLVNPTCSICKITFETKSALQEHALKCHTSKSSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350050;
- 90% Identity
- -
- 80% Identity
- -