Snig008072.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292315.1:17464839-17526178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.16 12.7 0.8 3 21 580 598 578 599 0.94 2 11 0.37 30 5.5 0.2 2 16 608 622 607 622 0.93 3 11 9.7e-05 0.0079 16.8 0.9 1 21 689 709 689 710 0.97 4 11 0.29 23 5.9 0.7 1 12 718 729 718 732 0.89 5 11 4.4 3.5e+02 2.2 0.3 1 9 829 837 829 839 0.89 6 11 1.2e-05 0.00095 19.7 1.5 1 21 925 945 925 946 0.97 7 11 5.2 4.2e+02 1.9 1.2 1 15 954 968 954 968 0.89 8 11 4.3e-05 0.0035 17.9 1.3 1 20 990 1009 990 1011 0.96 9 11 1.4 1.1e+02 3.7 0.9 1 19 1019 1037 1019 1039 0.81 10 11 1e-05 0.00083 19.9 0.3 2 21 1041 1060 1040 1061 0.95 11 11 0.0012 0.097 13.4 5.3 1 23 1069 1092 1069 1092 0.97
Sequence Information
- Coding Sequence
- ATGATTCCCCGATCGTTGGATTTCTCCAAATGTTTGCTGCCTGATGGTCGTTATTTTTGTCCCAGTTCTCCATCGCGGGTCTACAAAAATAAGCgtgaATCCGATTATTTCACAGTTGACGAAGATTTTCAGACATATCCCGCTTCGTATTTGGATGAACACATTTTATCAGAAAATGTAACGAATGAAAATATAATCTACAAAGGTCCAAGATTAATTATTAATGGCAGAAacGGAATCAATGTATCGTTCATGCGTCACTATACACGAGGTGGCTTAGAATATATTCCTTTTACAAAAACGAATCGTGGATATCAGTGCGTCAAGTGTGGAGTGATTGAGGTATTCGACGTGCATCAAGATCATGTATATACAACAGACATAAAGCGTAATTCATCCACCAGCCAGTTGCATGTTTTGCGTCCTGGAGTAAAAAGAAACTGTGTAGTATGCTACGAGAAAAAAGACATTCCTGGTTGGAAACGGCAAACAATGTATTTTTGTGATACTTGTCAGGAAAAACCACGATTGCACGTTGGTGATTGCTTCGAGAGTTCTGATATCACAGTCACAACTGCCAAGTACCGTATTGAAGTTTCTATTAATTACGATATATTTTCAGAAATTGATTTTCTAAGATCACGAAACCTTAAGTTTAGTCGAAAGCAAGTTGATGCGATGgaagtttattatttatcaaacatgTATCCATCCAGTACAACAACGCAAATAATTGCCTCAGCTGTTGGTCTCTCTTACAAACAAGTGCGACAATGGTTTGTTAATCaggTCTTAGCGGCTGTATGTAAGAAGCAAGCTGCTTCAAACAGGAGCCTCATTTTCTCCGACAAGCAACGTGACGGACtggaaaagttattttttagaaatcCATACCCAACTCGTgaaaaacaggaaaaaattGCTAAAGATCTTGATATTACATATCAACAAGTTTATCAATGGTTTAAACGCCAACACTATAAGGTAGAGaaagaGAAGCCTCTACCATGCGATGAAAATCTTATCTCGGAGAACGAGCATAAAACGTtggaagaaaattattttcgaaatggATACCCATCTCGTGAGCAAATAGAATTTGCTTACAAACTTGGCCTTACGTACGCCCCAATACGAACCACGGTTGAGTATCGACGAAAATCAGAAAGATTAGggATTATTTCTAATAACACAGTAAGTGCGTTTAGTGaagaacaaattcaaaaattggaaaaggGTTTTTCGTCAAACATGTTTCCAACATGTAAGCAACAGAAAGAAATAGCTGCAACAATAGGAGTTCCTTATATTCATGTACAACAATGGTTTGTCCAACGACGCTGTTCTCAACGTTGGAATAGCAGCTTGCCCCCTGTTGAATTCGATCAAATCATTCAAGATGATCAATTCACTCCACTACAACTTGAAACTTTGAATATGGTCTTTGCACGAAATCCAAATCTAAATCGGGGACAAAAGAATTTACTGGCTGCTTCTTTAAATCTTTCATCAACGCTAGTAGATCGCTGGTTTAACTATCAAAACAACAAAGAAGAACTTgAAGAGTGGATGGTGAGTGAAGAAGAAGGTGAAGAGGCAAATAATGATCCATTAAATATAAAAGGTGACGAGTTCAGTTCAAATCGAAAAGAAGTGGATCCTATTCAAGATATTTATGTAGGGTACGTAGTGAAAAATCGAGGAAATGCAACAAGTGGTGCCCACACGAATGTTCACTGTCCAAAATGCGACAAGgtATATAAATGGAGAAATAATTTATCCAGACATCTACGTTATGAATGTGGGAAAGAGGCACAAATTAAATGCCCATTGTGTCCCATTTCCACAAAACATCGCTCGAATTTTCCCTACGATGATAATTCAAAAAGCCTCTTGAAAGCGCTTAGAACTGAATACATCTCGTCGGCGTTTCCATACGCCATGCCTCATCCAAGAGACCAAGCTCACACAATTGCTTTATTGTCAGCGTCTTCGCCAAATAACAATTATCACCAACGAAAAAAGATCCCTACCGAGCATCTAGAAAACTCTTCGGACAAAATCTATGTTTGTCCCAATTGTAACAAAAAGTACATGCATAAGGTGACTTTGAGTCGTCACATTCGACTCGAATGTCGTAAAGAACCCAGTTATCAATGCCCGATATGTTTCCATAAATTTAAACaTATATCACTTGATAATTGTCAGTTATTGATAAGTGATGATGCTGAAAACTATTGGCCTAGGCTATGTGACTATCAGTCGcaatcaaaaccaaaaaaaccGTGTGTGCCAAAACCGTCAAGCGAAAATGTAGCAGCCAATCGACGCATAAAGAAAGAGAACATTATGAAATCAACCGATAAAGCTAAATATCGGcaattattgtataatatagGGATTGAGGAGGACCAAACCAAATCAGTGATGTATAACAAGAATAATCGATTATTACCGTGTGCCGAGTACTTCACGAACGATGGTTATTCTTGTCCCCAGTGCCATCgtgTCTCAGAGATTGATGAAGGAATTGAGAATCTTTTCGAGCCTGAATATTTAGAGGAAGACGAAGAGGCTAAGACACTTATAGAAAACGAACGCTTAAAATTCAAACAGCAAAATATTGATAACACTTTAACGAATTATTGTCAACagcaagaaaatattatttcgcACTCAGATAATAGCGATAAAAGGCGACATCATACaagaaaaaaccgaaaacctTTACCTGATCACATGACACCACGTTTAAGCACAGCGGATAATAGATTCAAATGTCCCAAGTGTAACAAAACATATTCTATGATGAAAAATTTAAGGCGGCATTTAAGATTAGAATGCGGAATTGTTCCTAAGTATCATTGTCCATTTTGTCCAATGAAATATGAGTCCAATCATCATGGCAGAAATGGCAATTATAGACGACGAATGACATAtccaacaaatttaaattcttctaagaaatttcaatgttttcaaTGCGGAAAAGAATATTCGTACAAGTCGAGTTTGTGGCGTCATTTGAGTTTTGAGTGTCGAAAAGATCCCAAATTTCAATGCCCTTATTGCTACTATAAGTGTACCTTGTTAGCTTTAGTCTCAGCACACAAGATTCTAACGTGTCCGAAGTGTGGACGATCTTATAAGGTATTGTCATCATTAAGACGACATCTTCGATTAGAATGTGGCAAAGAACCTCAGTTCCAATGTCCACATTGTCCACATCGATCAAAATTGAAATCCAATCTATACCAACATATTAGATATAGACACAAAGAGCAATTTGTAGAATCCATTTAA
- Protein Sequence
- MIPRSLDFSKCLLPDGRYFCPSSPSRVYKNKRESDYFTVDEDFQTYPASYLDEHILSENVTNENIIYKGPRLIINGRNGINVSFMRHYTRGGLEYIPFTKTNRGYQCVKCGVIEVFDVHQDHVYTTDIKRNSSTSQLHVLRPGVKRNCVVCYEKKDIPGWKRQTMYFCDTCQEKPRLHVGDCFESSDITVTTAKYRIEVSINYDIFSEIDFLRSRNLKFSRKQVDAMEVYYLSNMYPSSTTTQIIASAVGLSYKQVRQWFVNQVLAAVCKKQAASNRSLIFSDKQRDGLEKLFFRNPYPTREKQEKIAKDLDITYQQVYQWFKRQHYKVEKEKPLPCDENLISENEHKTLEENYFRNGYPSREQIEFAYKLGLTYAPIRTTVEYRRKSERLGIISNNTVSAFSEEQIQKLEKGFSSNMFPTCKQQKEIAATIGVPYIHVQQWFVQRRCSQRWNSSLPPVEFDQIIQDDQFTPLQLETLNMVFARNPNLNRGQKNLLAASLNLSSTLVDRWFNYQNNKEELEEWMVSEEEGEEANNDPLNIKGDEFSSNRKEVDPIQDIYVGYVVKNRGNATSGAHTNVHCPKCDKVYKWRNNLSRHLRYECGKEAQIKCPLCPISTKHRSNFPYDDNSKSLLKALRTEYISSAFPYAMPHPRDQAHTIALLSASSPNNNYHQRKKIPTEHLENSSDKIYVCPNCNKKYMHKVTLSRHIRLECRKEPSYQCPICFHKFKHISLDNCQLLISDDAENYWPRLCDYQSQSKPKKPCVPKPSSENVAANRRIKKENIMKSTDKAKYRQLLYNIGIEEDQTKSVMYNKNNRLLPCAEYFTNDGYSCPQCHRVSEIDEGIENLFEPEYLEEDEEAKTLIENERLKFKQQNIDNTLTNYCQQQENIISHSDNSDKRRHHTRKNRKPLPDHMTPRLSTADNRFKCPKCNKTYSMMKNLRRHLRLECGIVPKYHCPFCPMKYESNHHGRNGNYRRRMTYPTNLNSSKKFQCFQCGKEYSYKSSLWRHLSFECRKDPKFQCPYCYYKCTLLALVSAHKILTCPKCGRSYKVLSSLRRHLRLECGKEPQFQCPHCPHRSKLKSNLYQHIRYRHKEQFVESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348665;
- 90% Identity
- iTF_01348665;
- 80% Identity
- iTF_01348665;