Snig014375.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- -
- Assembly
- GCA_958496155.1
- Location
- OY292317.1:22670647-22687394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.9 8e+02 1.1 0.1 1 10 179 188 179 195 0.77 2 15 1.1 88 4.1 0.1 1 19 225 243 225 243 0.92 3 15 6.3 5.1e+02 1.7 1.2 1 23 462 484 462 484 0.79 4 15 0.07 5.6 7.8 0.2 1 23 562 584 562 584 0.97 5 15 0.041 3.3 8.6 0.0 2 19 590 607 589 609 0.96 6 15 0.00057 0.046 14.4 0.1 2 23 619 640 618 640 0.96 7 15 0.0012 0.094 13.4 3.9 1 23 648 670 648 670 0.99 8 15 0.0022 0.18 12.6 5.7 1 23 675 698 675 698 0.96 9 15 0.87 71 4.4 3.7 2 23 704 726 703 726 0.94 10 15 0.017 1.4 9.7 0.6 1 23 731 754 731 754 0.95 11 15 5.4e-05 0.0043 17.6 0.3 1 23 761 783 761 783 0.95 12 15 0.0012 0.095 13.4 2.1 2 21 848 867 847 869 0.94 13 15 0.081 6.6 7.6 2.8 1 23 872 894 872 894 0.97 14 15 3.9e-05 0.0032 18.1 0.8 1 23 899 921 899 921 0.98 15 15 0.00017 0.014 16.0 0.6 1 22 927 948 927 948 0.94
Sequence Information
- Coding Sequence
- ATGGCTTCGATCGATCCATTGGCCAAGAATAAAAGTTTGACGAGAAGCACCGCGAAACCAGtaccaaaatcaaaaaatgtccaACACGACGACATCGAGGATTTGCTAATGGCTCATGTGGTTATTCAAAAGAAAGCTGCCAAGCCGACCAGTGAAAATGCCTCTGAAGATGAGCTCGTACGAAAACGGCCGGGCCGCTCTAAGGGACGACCTAGAACAAAACATCTAACACTTGACTCCAACGTAAAAGTTTCACCGAATAAAAGCATTGAAATCATTGAAGACTCGGATAAAAATACACGAAAAGCATCGCCAGAGGTCTCAGAAAAACGTCGTGGTAAAGTTTCCGAGAAATACGCTGCGTATATTTCAAGTAAAACAAAAACtcctacaattaaaaaaactcaaagtaACTCACCGAAAGCTCGAATCAAAACACATGAAACTCTTTCATCTGATAAACTGAAGGAAAATGAGTCTAATGTTCAGGTCGAGAAATTAGCAGAagtTGAAATTATAGACCAAAAAGAGGTCCATCAATGCCAGCTTTGTGGAACGAAAAGCCATGACTTGATTGATCTCAACGGCTCGGATGCCCAAGGGTTACAACTgcgagaaaaaatcaaaaagcacATGCCTCAACAAATTTCCAACTTGGATACCTCATCTCATCACATTTGTACTATGTGCAAACAAACTGTGATCAATTGGGCCCAATACTATGAACATTGTACGCGACTGAAAACTGTTACTACATCCGAAACGATTGAAGCCAAAGAAGTTTATGAAGAAGAGAAAGAAGAAACTGTCAATGAAACCGAGGAAACGTTAAAGACTGAAAATCGAATCATTTCCGATTCCGAGGATAATATCGAGAAAATGTTACGAGAAATGCATGAAATGGAGCCCGAATATGTAGATGTAAATTGTTCAACATCACCGCAACTATTAGAGGAAGAAATGGAAATGGAATTTTTGGATCATGAGAAAGATCTTGTTGatcagGCATTGTTACAtcaaaaaatatcgataacggTTCCTCCATCGACGCAGTCTATCGAAGAGATTCTCGAGGAAAAGCATGACGTGCACAGGAAAATAATTCGAATGGATCGCAAACTCAGCGAGGACGAGTTGCGTTCGTTACTTGAAAGAACCGGTTTTAAATCGCTCACAACCGTGTTCCTAATGAAGTTTAATAACAaacgaaaatttcaatttggcGACTTGGAAAAGTTCTATAAAGACACTAAAGACAAATGTGACCGAGTCAAAAATCtctataaaaacaaagaaaatctcAGTAATGATCACTATGAAAACTTAGCCAAGTCTTACGCGCATCTAACACTAGACAACGTCCAAACCGAAAAGGAAATGTTCTTTCGATGTCCCGAATGTCGCGTGTATTTAGCATCGAAACAGTTCACCAAACATTATAAATTGGATCACAACAAGTTGGTGGCTCTTTGCGATTTTTGTCgCTTGTTATTACCGTATGAAAcacaagaacaaaaaaaactgGTTATGGAACACATCAACTTACACGAATCAAAGCAAAAGCATAAAAGTCCAGAAATAATCACTAATATTAATAAGCTTATCGAAAGCCAAAAATTAACGGAAGAAGCCAGTGATATTTCCAAGCATCGATCGTCCGAAACGAATCCTTCCTATTTGAACTACTCGTGCAATCGATGTGATGCTCAATACACTAAAGAATCAGAAATTGCAGAACATGTCAAGCTTCATAAGCGAGAACGAGTCGTTTGTGATGTCTGCGCCAAGACTTTTGAGTCACGCTTTGAGTTGATCCAACACGACGACGAACATAAAGATTGCGATTCAAAatTAATCTGTGAGACTTGCGGTGAATCATATAGCAATTTGGAGACATACGAAATTCATTTACAGTCTCATGCTAACGAAAATCAACTCGATTACACTTGTCCTCATTGCAGAAGAAAatacgTTAAAAGAAATGAATTTCTTATTCATCTTAAAACCCACGGTGAAAAGACGCACATTTGCAAGATTTGCAGTTGTGCATTTAGTCAACGGGATCATTTACTCGATCACAAAAAGACAGTGCATGGAATGAATCTGTTGCACTGTCCTCACTGTAATTTCTTCAGTCCTTTTAGTTCGCgattaaaattacatttgaaaGCTCAACATGGAAACAGTTCATTCAACTGTGACGAATGCCAGGATTCTTTTGTCTCAATGAAGAAACTACGCGAACACATGATCCAGAACCACGCACGAAACTTAGAAAGTTTCGATTGCCCACTGTGTGATTGGAAATTTGTACAAGAAACCAACTTACAAAAGCATTTTGATGTTCATGTCGAAAAGGGTCATACCAAGTGTAAAGTATGCAATGCACTATTCTTCATCAAAGgtttaaaattagaaatttcgGATGtggaagaacataaagcggaaCATACAAACGAAGAAAATGCCATTTTCAAGCGACCCTATAGTCCGTCTGTGATTCGTATGACGTCATGGCGAGATAATAAAGCCTTGCGGATGTATTGTCGCGATTGTAACGAATCATTTGCAACACCGCTGGAGCTTCGAAAGCATCAGCGTTGCCACAAACCATTCTACTGCAACATTTGTCAAAGTGTTTCTAACAATGAACAAACTTTTACACATCACATGTTACAACATGAAGACCGAAAATTTGAATGTACCGAATGTAAAAAACGTTTCGTATCGAATAATGCTCTCAGCTTGCACGTTCGAAACCATTCGGATACATTTGATTTCCAATGTTCGGTGTGTGAGAGACGATTTAAACGACCATTCGACTGGAAACGACATGAAATGACGTGTCTTGAAATGCGTGGTTTGCCAACGAATACTACAATCAAATCTCGACGAAATCAACGAaaacaaaatAAAGACGAAACTCTATCAATTTATGTGAAGCAAGAAGATGAGAATCAAGCTGTGGAATTGGTTGATTCGAGTCAAAAAGACGATGAATATGTTTTAGTTAATAATCCAGAAAGTGATGAGGTTTATATTCCAAAGGAGGAAATTGTTGAGTTAATTTTGGAAGACGAAAATTCAGTGTCAGATGAAATGATCGAAATTGACGAATCCGAATTGGCGGCGTTTCGTGAATGGCAAAAAGTGGCAATGCAAAATACACAGTCGATGAAGCGAAATATGACATTCGATACAATTTCGGGAAAACGTATTCGACTCGTGCCGCAATCGGACGACGATGGTCTCAACAATTCTGAGCAAATGTTTTATTCGATCGAACAAGTCGACGACAAGTCGCAAAAAAGTGAATTTATCGATTCGTCATCGTTCATTTTGCATGAGAACATTAACGAACAAATGCAAAGTGACAACAATGAAACAAATAATGAGGAAAAGTTTGTGatcaacaatgaaaattatatCATTGACAACGGGGAAATTAGTGAGGAGTCGGCGGTGTATGTCAATGCGGAGGACGAGTCGCATGTCGTACATGTTTTGGATGGTTCATCAAATATTGTTTATAACATGGACATGGATGGTACCATTAACGATCTAAACATGCAAACAATCGCCGACGAAAATATTCTCTTTCAACAAACTGAACCGTCAACAAACGACACAAATCACGAAATCGAAATGGTCGACAGtcactttgaaaatatttcttatgtGTTTGACAATGCAATCAACAGCTCGGAATTGGGAAAAGTTGCGACAATCTATCTACAAAAAGACGCCAACACTGATCAAGTCGTAATGAACGACATTAATCAAAGTATCGCAATTGTTGATAAAAGTCAAATTAAAGTAGTGAAAGTCAACAATCAATAA
- Protein Sequence
- MASIDPLAKNKSLTRSTAKPVPKSKNVQHDDIEDLLMAHVVIQKKAAKPTSENASEDELVRKRPGRSKGRPRTKHLTLDSNVKVSPNKSIEIIEDSDKNTRKASPEVSEKRRGKVSEKYAAYISSKTKTPTIKKTQSNSPKARIKTHETLSSDKLKENESNVQVEKLAEVEIIDQKEVHQCQLCGTKSHDLIDLNGSDAQGLQLREKIKKHMPQQISNLDTSSHHICTMCKQTVINWAQYYEHCTRLKTVTTSETIEAKEVYEEEKEETVNETEETLKTENRIISDSEDNIEKMLREMHEMEPEYVDVNCSTSPQLLEEEMEMEFLDHEKDLVDQALLHQKISITVPPSTQSIEEILEEKHDVHRKIIRMDRKLSEDELRSLLERTGFKSLTTVFLMKFNNKRKFQFGDLEKFYKDTKDKCDRVKNLYKNKENLSNDHYENLAKSYAHLTLDNVQTEKEMFFRCPECRVYLASKQFTKHYKLDHNKLVALCDFCRLLLPYETQEQKKLVMEHINLHESKQKHKSPEIITNINKLIESQKLTEEASDISKHRSSETNPSYLNYSCNRCDAQYTKESEIAEHVKLHKRERVVCDVCAKTFESRFELIQHDDEHKDCDSKLICETCGESYSNLETYEIHLQSHANENQLDYTCPHCRRKYVKRNEFLIHLKTHGEKTHICKICSCAFSQRDHLLDHKKTVHGMNLLHCPHCNFFSPFSSRLKLHLKAQHGNSSFNCDECQDSFVSMKKLREHMIQNHARNLESFDCPLCDWKFVQETNLQKHFDVHVEKGHTKCKVCNALFFIKGLKLEISDVEEHKAEHTNEENAIFKRPYSPSVIRMTSWRDNKALRMYCRDCNESFATPLELRKHQRCHKPFYCNICQSVSNNEQTFTHHMLQHEDRKFECTECKKRFVSNNALSLHVRNHSDTFDFQCSVCERRFKRPFDWKRHEMTCLEMRGLPTNTTIKSRRNQRKQNKDETLSIYVKQEDENQAVELVDSSQKDDEYVLVNNPESDEVYIPKEEIVELILEDENSVSDEMIEIDESELAAFREWQKVAMQNTQSMKRNMTFDTISGKRIRLVPQSDDDGLNNSEQMFYSIEQVDDKSQKSEFIDSSSFILHENINEQMQSDNNETNNEEKFVINNENYIIDNGEISEESAVYVNAEDESHVVHVLDGSSNIVYNMDMDGTINDLNMQTIADENILFQQTEPSTNDTNHEIEMVDSHFENISYVFDNAINSSELGKVATIYLQKDANTDQVVMNDINQSIAIVDKSQIKVVKVNNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -